RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 PELP1Q8IZL8 1130 aaKnown RBP9.25□□□□□ -0.93
PTPRB-202ENST00000334414 MYT1Q01538 1121 aa9.15□□□□□ -0.94
PTPRB-202ENST00000334414 CCER1Q8TC90 406 aaPredicted RBP8.75□□□□□ -1.01
PTPRB-202ENST00000334414 CENPBP07199 599 aaPredicted RBP8.64□□□□□ -1.03
PTPRB-202ENST00000334414 ZEB1P37275 1124 aaPredicted RBP8.61□□□□□ -1.03
PTPRB-202ENST00000334414 ERICH6Q7L0X2 663 aa8.6□□□□□ -1.03
PTPRB-202ENST00000334414 NISCHQ9Y2I1 1504 aa8.53□□□□□ -1.04
PTPRB-202ENST00000334414 YTHDC1Q96MU7 727 aaKnown RBP8.52□□□□□ -1.04
PTPRB-202ENST00000334414 DCAF8L2P0C7V8 631 aa8.45□□□□□ -1.06
PTPRB-202ENST00000334414 TTBK1Q5TCY1 1321 aaPredicted RBP8.43□□□□□ -1.06
PTPRB-202ENST00000334414 APLP2Q06481 763 aa8.41□□□□□ -1.06
PTPRB-202ENST00000334414 SUPT5HO00267 1087 aaKnown RBP8.35□□□□□ -1.07
PTPRB-202ENST00000334414 NEFLP07196 543 aa8.35□□□□□ -1.07
PTPRB-202ENST00000334414 FAM9AQ8IZU1 332 aaPredicted RBP8.3□□□□□ -1.08
PTPRB-202ENST00000334414 DAXXQ9UER7 740 aaPredicted RBP8.18□□□□□ -1.1
PTPRB-202ENST00000334414 PCGF6Q9BYE7 350 aa8.17□□□□□ -1.1
PTPRB-202ENST00000334414 RTL5Q5HYW3 569 aaPredicted RBP8.08□□□□□ -1.12
PTPRB-202ENST00000334414 SHROOM4Q9ULL8 1493 aa8.08□□□□□ -1.12
PTPRB-202ENST00000334414 CLSPNQ9HAW4 1339 aa8.04□□□□□ -1.12
PTPRB-202ENST00000334414 TRIM26Q12899 539 aaPredicted RBP8.02□□□□□ -1.13
PTPRB-202ENST00000334414 MYT1LQ9UL68 1186 aa8.02□□□□□ -1.13
PTPRB-202ENST00000334414 HRCP23327 699 aa8.02□□□□□ -1.13
PTPRB-202ENST00000334414 ZNF316A6NFI3 1004 aaPredicted RBP7.98□□□□□ -1.13
PTPRB-202ENST00000334414 GLIPR1L2Q4G1C9 344 aa7.97□□□□□ -1.13
PTPRB-202ENST00000334414 TRIM41Q8WV44 630 aa7.93□□□□□ -1.14
PTPRB-202ENST00000334414 EHMT2Q96KQ7 1210 aa7.86□□□□□ -1.15
PTPRB-202ENST00000334414 DIEXFQ68CQ4 756 aaKnown RBP7.79□□□□□ -1.16
PTPRB-202ENST00000334414 UBTFP17480 764 aaKnown RBP7.78□□□□□ -1.16
PTPRB-202ENST00000334414 CDK11AQ9UQ88 783 aaPredicted RBP7.78□□□□□ -1.16
PTPRB-202ENST00000334414 ANP32AP39687 249 aaKnown RBP7.75□□□□□ -1.17
PTPRB-202ENST00000334414 ANP32BQ92688 251 aaKnown RBP7.74□□□□□ -1.17
PTPRB-202ENST00000334414 GTF3C3Q9Y5Q9 886 aa7.67□□□□□ -1.18
PTPRB-202ENST00000334414 ACIN1Q9UKV3 1341 aaKnown RBP7.64□□□□□ -1.19
PTPRB-202ENST00000334414 ATP1B4Q9UN42 357 aaPredicted RBP7.64□□□□□ -1.19
PTPRB-202ENST00000334414 ZBTB47Q9UFB7 747 aaPredicted RBP7.64□□□□□ -1.19
PTPRB-202ENST00000334414 ANP32CO43423 234 aa7.63□□□□□ -1.19
PTPRB-202ENST00000334414 NEFMP07197 916 aa7.61□□□□□ -1.19
PTPRB-202ENST00000334414 ANP32EQ9BTT0 268 aa7.6□□□□□ -1.19
PTPRB-202ENST00000334414 DCAF1Q9Y4B6 1507 aa7.59□□□□□ -1.19
PTPRB-202ENST00000334414 UPF2Q9HAU5 1272 aaKnown RBP7.58□□□□□ -1.2
PTPRB-202ENST00000334414 TNNT2P45379 298 aaPredicted RBP7.57□□□□□ -1.2
PTPRB-202ENST00000334414 RANGAP1P46060 587 aaPredicted RBP7.56□□□□□ -1.2
PTPRB-202ENST00000334414 CCDC180Q9P1Z9 1646 aa7.56□□□□□ -1.2
PTPRB-202ENST00000334414 EIF5BO60841 1220 aaKnown RBP7.55□□□□□ -1.2
PTPRB-202ENST00000334414 TRIM44Q96DX7 344 aaPredicted RBP7.53□□□□□ -1.2
PTPRB-202ENST00000334414 CANXP27824 592 aaKnown RBP7.52□□□□□ -1.21
PTPRB-202ENST00000334414 CHIC1Q5VXU3 224 aa7.51□□□□□ -1.21
PTPRB-202ENST00000334414 POLR3GLQ9BT43 218 aa7.5□□□□□ -1.21
PTPRB-202ENST00000334414 DDRGK1Q96HY6 314 aa7.49□□□□□ -1.21
PTPRB-202ENST00000334414 NCLP19338 710 aaKnown RBP7.49□□□□□ -1.21
PTPRB-202ENST00000334414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.47□□□□□ -1.21
PTPRB-202ENST00000334414 HNRNPUL2Q1KMD3 747 aaKnown RBP7.47□□□□□ -1.21
PTPRB-202ENST00000334414 HSP90AA1P07900 732 aaKnown RBP7.47□□□□□ -1.21
PTPRB-202ENST00000334414 PPARGC1BQ86YN6 1023 aaKnown RBP7.45□□□□□ -1.22
PTPRB-202ENST00000334414 ERICH6BQ5W0A0 696 aa7.44□□□□□ -1.22
PTPRB-202ENST00000334414 BCANQ96GW7 911 aa7.44□□□□□ -1.22
PTPRB-202ENST00000334414 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.43□□□□□ -1.22
PTPRB-202ENST00000334414 BECN1Q14457 450 aa7.43□□□□□ -1.22
PTPRB-202ENST00000334414 ITGAEP38570 1179 aa7.42□□□□□ -1.22
PTPRB-202ENST00000334414 GOLGA6L22H0YM25 854 aa7.4□□□□□ -1.22
PTPRB-202ENST00000334414 CDK11BP21127 795 aaKnown RBP7.39□□□□□ -1.23
PTPRB-202ENST00000334414 PPM1GO15355 546 aaPredicted RBP7.38□□□□□ -1.23
PTPRB-202ENST00000334414 SLC4A1APQ9BWU0 796 aaKnown RBP7.38□□□□□ -1.23
PTPRB-202ENST00000334414 FAM50AQ14320 339 aaKnown RBP7.37□□□□□ -1.23
PTPRB-202ENST00000334414 FKBP8Q14318 412 aa7.37□□□□□ -1.23
PTPRB-202ENST00000334414 TONSLQ96HA7 1378 aa7.35□□□□□ -1.23
PTPRB-202ENST00000334414 GOLGA6L6A8MZA4 724 aa7.35□□□□□ -1.23
PTPRB-202ENST00000334414 TRIM52Q96A61 297 aa7.35□□□□□ -1.23
PTPRB-202ENST00000334414 NPM2Q86SE8 214 aaKnown RBP7.35□□□□□ -1.23
PTPRB-202ENST00000334414 ARID4BQ4LE39 1312 aaPredicted RBP7.35□□□□□ -1.23
PTPRB-202ENST00000334414 PTMSP20962 102 aa7.34□□□□□ -1.23
PTPRB-202ENST00000334414 NEUROD1Q13562 356 aa7.34□□□□□ -1.23
PTPRB-202ENST00000334414 CCDC136Q96JN2 1154 aa7.33□□□□□ -1.24
PTPRB-202ENST00000334414 LOC105371045A0A1W2PR82 267 aa7.32□□□□□ -1.24
PTPRB-202ENST00000334414 MYH16Q9H6N6 1097 aa7.31□□□□□ -1.24
PTPRB-202ENST00000334414 L1TD1Q5T7N2 865 aaKnown RBP7.3□□□□□ -1.24
PTPRB-202ENST00000334414 CHAF1AQ13111 956 aaPredicted RBP7.3□□□□□ -1.24
PTPRB-202ENST00000334414 NBR1Q14596 966 aa7.3□□□□□ -1.24
PTPRB-202ENST00000334414 CASC1Q6TDU7 716 aa7.29□□□□□ -1.24
PTPRB-202ENST00000334414 HNRNPUQ00839 825 aaKnown RBP eCLIP7.28□□□□□ -1.24
PTPRB-202ENST00000334414 NRDCO43847 1150 aa7.27□□□□□ -1.25
PTPRB-202ENST00000334414 CFAP44Q96MT7 982 aa7.27□□□□□ -1.25
PTPRB-202ENST00000334414 SCAF1Q9H7N4 1312 aaKnown RBP7.26□□□□□ -1.25
PTPRB-202ENST00000334414 ZRSR1Q15695 479 aaKnown RBP7.26□□□□□ -1.25
PTPRB-202ENST00000334414 CHMP4BQ9H444 224 aaKnown RBP7.25□□□□□ -1.25
PTPRB-202ENST00000334414 EEA1Q15075 1411 aa7.25□□□□□ -1.25
PTPRB-202ENST00000334414 NOP58Q9Y2X3 529 aaKnown RBP7.25□□□□□ -1.25
PTPRB-202ENST00000334414 NAP1L5Q96NT1 182 aaPredicted RBP7.25□□□□□ -1.25
PTPRB-202ENST00000334414 USP35Q9P2H5 1018 aa7.24□□□□□ -1.25
PTPRB-202ENST00000334414 PTMAP06454 111 aaKnown RBP7.24□□□□□ -1.25
PTPRB-202ENST00000334414 CNGB1Q14028 1251 aaPredicted RBP7.24□□□□□ -1.25
PTPRB-202ENST00000334414 BCL11AQ9H165 835 aa7.23□□□□□ -1.25
PTPRB-202ENST00000334414 ZNF326Q5BKZ1 582 aaKnown RBP7.22□□□□□ -1.25
PTPRB-202ENST00000334414 DNTTIP2Q5QJE6 756 aaKnown RBP7.22□□□□□ -1.25
PTPRB-202ENST00000334414 MSNP26038 577 aaKnown RBP7.22□□□□□ -1.25
PTPRB-202ENST00000334414 WDR43Q15061 677 aaKnown RBP eCLIP7.22□□□□□ -1.25
PTPRB-202ENST00000334414 TMC1Q8TDI8 760 aa7.19□□□□□ -1.26
PTPRB-202ENST00000334414 RSPH6AQ9H0K4 717 aa7.19□□□□□ -1.26
PTPRB-202ENST00000334414 MS4A1P11836 297 aa7.18□□□□□ -1.26
PTPRB-202ENST00000334414 PPP4R2Q9NY27 417 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms