RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 A0A1B0GVX0 72 aa15.33■□□□□ 0.05
CTDNEP1-201ENST00000318988 K7EQZ3 153 aa15.33■□□□□ 0.05
CTDNEP1-201ENST00000318988 PRR15Q8IV56 129 aa15.33■□□□□ 0.05
CTDNEP1-201ENST00000318988 Q8N9L7 120 aa15.33■□□□□ 0.05
CTDNEP1-201ENST00000318988 IGLV7-46A0A075B6I9 117 aa15.33■□□□□ 0.04
CTDNEP1-201ENST00000318988 HIST1H4AP62805 103 aaKnown RBP15.3■□□□□ 0.04
CTDNEP1-201ENST00000318988 MT-ATP8P03928 68 aa15.27■□□□□ 0.04
CTDNEP1-201ENST00000318988 C8orf87E5RJ46 101 aa15.23■□□□□ 0.03
CTDNEP1-201ENST00000318988 LINC00313P59037 77 aa15.22■□□□□ 0.03
CTDNEP1-201ENST00000318988 C8orf17Q9NRJ1 99 aa15.2■□□□□ 0.02
CTDNEP1-201ENST00000318988 IMUPQ9GZP8 106 aa15.18■□□□□ 0.02
CTDNEP1-201ENST00000318988 C9orf92A6NGG3 77 aa15.17■□□□□ 0.02
CTDNEP1-201ENST00000318988 NOTCH2NLQ7Z3S9 236 aa15.14■□□□□ 0.01
CTDNEP1-201ENST00000318988 HCG22E2RYF7 251 aa15.13■□□□□ 0.01
CTDNEP1-201ENST00000318988 A0A087WVE0 104 aa15.12■□□□□ 0.01
CTDNEP1-201ENST00000318988 MMP24-AS1A0A0U1RRL7 71 aa15.12■□□□□ 0.01
CTDNEP1-201ENST00000318988 WFDC13Q8IUB5 93 aa15.11■□□□□ 0.01
CTDNEP1-201ENST00000318988 hDV103S1A0JD37 113 aa15.1■□□□□ 0.01
CTDNEP1-201ENST00000318988 KRTAP13-3Q3SY46 172 aa15.1■□□□□ 0.01
CTDNEP1-201ENST00000318988 CASC2Q6XLA1 102 aa15.1■□□□□ 0.01
CTDNEP1-201ENST00000318988 TPRXLQ17RH7 258 aa15.09■□□□□ 0.01
CTDNEP1-201ENST00000318988 TMEM254Q8TBM7 123 aa15.04■□□□□ -0
CTDNEP1-201ENST00000318988 MRPL34Q9BQ48 92 aaKnown RBP15.01□□□□□ -0.01
CTDNEP1-201ENST00000318988 HERC1Q15751 4861 aa14.99□□□□□ -0.01
CTDNEP1-201ENST00000318988 KRTAP16-1A8MUX0 517 aa14.99□□□□□ -0.01
CTDNEP1-201ENST00000318988 NDUFS5O43920 106 aa14.94□□□□□ -0.02
CTDNEP1-201ENST00000318988 SCGB1A1P11684 91 aa14.92□□□□□ -0.02
CTDNEP1-201ENST00000318988 XP32Q5T750 250 aa14.92□□□□□ -0.02
CTDNEP1-201ENST00000318988 FAM236AA0A1B0GUQ0 79 aa14.91□□□□□ -0.02
CTDNEP1-201ENST00000318988 FAM236BA0A1B0GV22 79 aa14.91□□□□□ -0.02
CTDNEP1-201ENST00000318988 Q8N9P0 234 aaPredicted RBP14.89□□□□□ -0.03
CTDNEP1-201ENST00000318988 C20orf166-AS1Q96NR2 134 aa14.88□□□□□ -0.03
CTDNEP1-201ENST00000318988 A8MUU9 505 aa14.86□□□□□ -0.03
CTDNEP1-201ENST00000318988 Q75L30 129 aa14.85□□□□□ -0.03
CTDNEP1-201ENST00000318988 RPL37P61927 97 aaKnown RBP14.8□□□□□ -0.04
CTDNEP1-201ENST00000318988 TP53AIP1Q9HCN2 124 aa14.79□□□□□ -0.04
CTDNEP1-201ENST00000318988 LPAP08519 4548 aa14.78□□□□□ -0.04
CTDNEP1-201ENST00000318988 HMCN2Q8NDA2 5059 aa14.76□□□□□ -0.05
CTDNEP1-201ENST00000318988 ATOX1O00244 68 aa14.74□□□□□ -0.05
CTDNEP1-201ENST00000318988 ATP11AUNQ6ZP68 121 aa14.74□□□□□ -0.05
CTDNEP1-201ENST00000318988 SMIM20Q8N5G0 67 aa14.71□□□□□ -0.06
CTDNEP1-201ENST00000318988 UQCRQO14949 82 aa14.69□□□□□ -0.06
CTDNEP1-201ENST00000318988 ZCCHC13Q8WW36 166 aaKnown RBP14.68□□□□□ -0.06
CTDNEP1-201ENST00000318988 OCR1Q9BZK8 76 aa14.68□□□□□ -0.06
CTDNEP1-201ENST00000318988 SEC61BP60468 96 aaKnown RBP14.65□□□□□ -0.06
CTDNEP1-201ENST00000318988 TRAV7A0A075B6U4 112 aa14.61□□□□□ -0.07
CTDNEP1-201ENST00000318988 LRP2P98164 4655 aa14.6□□□□□ -0.07
CTDNEP1-201ENST00000318988 PCOTHQ58A44 107 aa14.6□□□□□ -0.07
CTDNEP1-201ENST00000318988 TRAV22A0A0B4J277 110 aa14.58□□□□□ -0.08
CTDNEP1-201ENST00000318988 Q5W150 140 aa14.58□□□□□ -0.08
CTDNEP1-201ENST00000318988 C5orf47Q569G3 176 aa14.54□□□□□ -0.08
CTDNEP1-201ENST00000318988 H0Y9P7 68 aa14.53□□□□□ -0.08
CTDNEP1-201ENST00000318988 SERP2Q8N6R1 65 aa14.53□□□□□ -0.08
CTDNEP1-201ENST00000318988 MP68P56378 58 aa14.51□□□□□ -0.09
CTDNEP1-201ENST00000318988 ANAPC13Q9BS18 74 aa14.5□□□□□ -0.09
CTDNEP1-201ENST00000318988 LINC00208Q96KT6 92 aa14.41□□□□□ -0.1
CTDNEP1-201ENST00000318988 IGKV2D-30A0A075B6S6 120 aa14.4□□□□□ -0.1
CTDNEP1-201ENST00000318988 H3BPC8 53 aa14.4□□□□□ -0.1
CTDNEP1-201ENST00000318988 IGKV2-30P06310 120 aa14.4□□□□□ -0.1
CTDNEP1-201ENST00000318988 COX7CP15954 63 aa14.38□□□□□ -0.11
CTDNEP1-201ENST00000318988 C1orf64Q8NEQ6 169 aa14.38□□□□□ -0.11
CTDNEP1-201ENST00000318988 LOC101927531A0A1B0GV80 90 aa14.37□□□□□ -0.11
CTDNEP1-201ENST00000318988 C7orf65Q6ZTY9 151 aa14.36□□□□□ -0.11
CTDNEP1-201ENST00000318988 SPINK7P58062 85 aa14.36□□□□□ -0.11
CTDNEP1-201ENST00000318988 MUC17Q685J3 4493 aa14.34□□□□□ -0.11
CTDNEP1-201ENST00000318988 PCP4P48539 62 aa14.34□□□□□ -0.11
CTDNEP1-201ENST00000318988 C20orf197Q8N268 126 aa14.3□□□□□ -0.12
CTDNEP1-201ENST00000318988 CYP4F30PQ9H0H9 118 aa14.27□□□□□ -0.12
CTDNEP1-201ENST00000318988 A0A0U1RQV1 116 aa14.25□□□□□ -0.13
CTDNEP1-201ENST00000318988 SNURFQ9Y675 71 aa14.23□□□□□ -0.13
CTDNEP1-201ENST00000318988 KRTAP4-1Q9BYQ7 146 aa14.19□□□□□ -0.14
CTDNEP1-201ENST00000318988 KLKP1Q107X0 134 aa14.15□□□□□ -0.14
CTDNEP1-201ENST00000318988 CCDC179H3BU77 68 aa14.12□□□□□ -0.15
CTDNEP1-201ENST00000318988 UBR4Q5T4S7 5183 aa14.09□□□□□ -0.15
CTDNEP1-201ENST00000318988 HRES1P13985 223 aa14.08□□□□□ -0.16
CTDNEP1-201ENST00000318988 RBM12B-AS1Q9P1G2 102 aa14.05□□□□□ -0.16
CTDNEP1-201ENST00000318988 NDUFC1O43677 76 aa14.02□□□□□ -0.16
CTDNEP1-201ENST00000318988 C4orf26Q17RF5 130 aa14.02□□□□□ -0.16
CTDNEP1-201ENST00000318988 FAM236DA0A1B0GTK5 79 aa13.94□□□□□ -0.18
CTDNEP1-201ENST00000318988 FAM236CP0DP71 79 aa13.94□□□□□ -0.18
CTDNEP1-201ENST00000318988 MPLKIPQ8TAP9 179 aa13.94□□□□□ -0.18
CTDNEP1-201ENST00000318988 CYSTM1Q9H1C7 97 aa13.94□□□□□ -0.18
CTDNEP1-201ENST00000318988 RNF213Q63HN8 5207 aa13.93□□□□□ -0.18
CTDNEP1-201ENST00000318988 COX6B2Q6YFQ2 88 aa13.91□□□□□ -0.18
CTDNEP1-201ENST00000318988 MUC2Q02817 5179 aa13.89□□□□□ -0.19
CTDNEP1-201ENST00000318988 H7BZZ5 65 aa13.89□□□□□ -0.19
CTDNEP1-201ENST00000318988 SPANXA2-OT1Q8N9U9 137 aa13.84□□□□□ -0.19
CTDNEP1-201ENST00000318988 A8MUN3 132 aa13.77□□□□□ -0.21
CTDNEP1-201ENST00000318988 KRTAP3-1Q9BYR8 98 aa13.74□□□□□ -0.21
CTDNEP1-201ENST00000318988 H1FX-AS1Q4G0G2 97 aa13.73□□□□□ -0.21
CTDNEP1-201ENST00000318988 DMAC1Q96GE9 116 aa13.73□□□□□ -0.21
CTDNEP1-201ENST00000318988 KRTAP19-2Q3LHN2 52 aa13.69□□□□□ -0.22
CTDNEP1-201ENST00000318988 TMEM258P61165 79 aa13.66□□□□□ -0.22
CTDNEP1-201ENST00000318988 ACYP2P14621 99 aa13.65□□□□□ -0.22
CTDNEP1-201ENST00000318988 ATP5EP56381 51 aaPredicted RBP13.63□□□□□ -0.23
CTDNEP1-201ENST00000318988 LCE2CQ5TA81 110 aa13.59□□□□□ -0.23
CTDNEP1-201ENST00000318988 S4R3F8 94 aa13.54□□□□□ -0.24
CTDNEP1-201ENST00000318988 CHKB-CPT1BH3BT56 60 aa13.47□□□□□ -0.25
CTDNEP1-201ENST00000318988 FAT4Q6V0I7 4981 aa13.45□□□□□ -0.26
CTDNEP1-201ENST00000318988 LCA10Q71F78 164 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms