RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MKI67P46013 3256 aaKnown RBP2.84□□□□□ -1.95
SCN1A-201ENST00000303395 KRTAP10-2P60368 255 aa2.83□□□□□ -1.96
SCN1A-201ENST00000303395 CHD7Q9P2D1 2997 aa2.83□□□□□ -1.96
SCN1A-201ENST00000303395 KRTAP13-2Q52LG2 175 aa2.83□□□□□ -1.96
SCN1A-201ENST00000303395 KRTAP10-10P60014 251 aa2.81□□□□□ -1.96
SCN1A-201ENST00000303395 HTTP42858 3142 aa2.81□□□□□ -1.96
SCN1A-201ENST00000303395 CELSR2Q9HCU4 2923 aa2.79□□□□□ -1.96
SCN1A-201ENST00000303395 SRRM2Q9UQ35 2752 aaKnown RBP2.79□□□□□ -1.96
SCN1A-201ENST00000303395 TPRXLQ17RH7 258 aa2.79□□□□□ -1.96
SCN1A-201ENST00000303395 INE1O15225 51 aa2.78□□□□□ -1.96
SCN1A-201ENST00000303395 COL12A1Q99715 3063 aa2.78□□□□□ -1.96
SCN1A-201ENST00000303395 ASH1LQ9NR48 2969 aaKnown RBP2.77□□□□□ -1.97
SCN1A-201ENST00000303395 TENM2Q9NT68 2774 aa2.77□□□□□ -1.97
SCN1A-201ENST00000303395 WDFY4Q6ZS81 3184 aa2.77□□□□□ -1.97
SCN1A-201ENST00000303395 KRTAP1-4P0C5Y4 121 aa2.77□□□□□ -1.97
SCN1A-201ENST00000303395 MGAQ8IWI9 3026 aa2.77□□□□□ -1.97
SCN1A-201ENST00000303395 TGP01266 2768 aa2.76□□□□□ -1.97
SCN1A-201ENST00000303395 REV3LO60673 3130 aa2.76□□□□□ -1.97
SCN1A-201ENST00000303395 PRUNE2Q8WUY3 3088 aa2.74□□□□□ -1.97
SCN1A-201ENST00000303395 DMXL2Q8TDJ6 3036 aa2.74□□□□□ -1.97
SCN1A-201ENST00000303395 A0A1B0GVY2 172 aa2.73□□□□□ -1.97
SCN1A-201ENST00000303395 LAMA1P25391 3075 aa2.73□□□□□ -1.97
SCN1A-201ENST00000303395 LAMA3Q16787 3333 aa2.73□□□□□ -1.97
SCN1A-201ENST00000303395 ATMQ13315 3056 aa2.71□□□□□ -1.97
SCN1A-201ENST00000303395 XP32Q5T750 250 aa2.71□□□□□ -1.98
SCN1A-201ENST00000303395 NBEAQ8NFP9 2946 aa2.71□□□□□ -1.98
SCN1A-201ENST00000303395 KRTAP13-4Q3LI77 160 aa2.71□□□□□ -1.98
SCN1A-201ENST00000303395 FREM2Q5SZK8 3169 aa2.7□□□□□ -1.98
SCN1A-201ENST00000303395 VWFP04275 2813 aa2.69□□□□□ -1.98
SCN1A-201ENST00000303395 KRTAP19-4Q3LI73 84 aa2.69□□□□□ -1.98
SCN1A-201ENST00000303395 CDH23Q9H251 3354 aa2.69□□□□□ -1.98
SCN1A-201ENST00000303395 TACC2O95359 2948 aa2.69□□□□□ -1.98
SCN1A-201ENST00000303395 EYSQ5T1H1 3165 aa2.68□□□□□ -1.98
SCN1A-201ENST00000303395 ZZEF1O43149 2961 aa2.67□□□□□ -1.98
SCN1A-201ENST00000303395 CELSR1Q9NYQ6 3014 aa2.67□□□□□ -1.98
SCN1A-201ENST00000303395 ADGRG4Q8IZF6 3080 aa2.66□□□□□ -1.98
SCN1A-201ENST00000303395 KRTAP12-2P59991 146 aa2.66□□□□□ -1.98
SCN1A-201ENST00000303395 PKD1L1Q8TDX9 2849 aa2.66□□□□□ -1.98
SCN1A-201ENST00000303395 XIRP2A4UGR9 3374 aa2.66□□□□□ -1.98
SCN1A-201ENST00000303395 ZANQ9Y493 2812 aa2.66□□□□□ -1.98
SCN1A-201ENST00000303395 UNC80Q8N2C7 3258 aa2.65□□□□□ -1.98
SCN1A-201ENST00000303395 SZT2Q5T011 3432 aa2.65□□□□□ -1.98
SCN1A-201ENST00000303395 RANBP2P49792 3224 aaKnown RBP2.65□□□□□ -1.99
SCN1A-201ENST00000303395 BOD1L1Q8NFC6 3051 aa2.63□□□□□ -1.99
SCN1A-201ENST00000303395 TENM4Q6N022 2769 aa2.62□□□□□ -1.99
SCN1A-201ENST00000303395 VPS13AQ96RL7 3174 aa2.62□□□□□ -1.99
SCN1A-201ENST00000303395 KRTAP15-1Q3LI76 137 aa2.62□□□□□ -1.99
SCN1A-201ENST00000303395 COL7A1Q02388 2944 aa2.61□□□□□ -1.99
SCN1A-201ENST00000303395 DCHS2Q6V1P9 2916 aa2.61□□□□□ -1.99
SCN1A-201ENST00000303395 MXRA5Q9NR99 2828 aa2.61□□□□□ -1.99
SCN1A-201ENST00000303395 COL6A3P12111 3177 aa2.6□□□□□ -1.99
SCN1A-201ENST00000303395 DNAH14Q0VDD8 3507 aa2.6□□□□□ -1.99
SCN1A-201ENST00000303395 HRNRQ86YZ3 2850 aaPredicted RBP2.59□□□□□ -2
SCN1A-201ENST00000303395 KRTAP12-1P59990 96 aa2.58□□□□□ -2
SCN1A-201ENST00000303395 MEGF8Q7Z7M0 2845 aa2.58□□□□□ -2
SCN1A-201ENST00000303395 VCANP13611 3396 aa2.57□□□□□ -2
SCN1A-201ENST00000303395 DMXL1Q9Y485 3027 aa2.57□□□□□ -2
SCN1A-201ENST00000303395 KRTAP10-6P60371 365 aaPredicted RBP2.55□□□□□ -2
SCN1A-201ENST00000303395 USP34Q70CQ2 3546 aa2.55□□□□□ -2
SCN1A-201ENST00000303395 SPTBN5Q9NRC6 3674 aaKnown RBP2.53□□□□□ -2
SCN1A-201ENST00000303395 ZFHX4Q86UP3 3567 aa2.53□□□□□ -2
SCN1A-201ENST00000303395 SPEGQ15772 3267 aa2.53□□□□□ -2
SCN1A-201ENST00000303395 KRTAP17-1Q9BYP8 105 aa2.52□□□□□ -2.01
SCN1A-201ENST00000303395 CELSR3Q9NYQ7 3312 aa2.52□□□□□ -2.01
SCN1A-201ENST00000303395 MUC3AQ02505 3323 aa2.51□□□□□ -2.01
SCN1A-201ENST00000303395 KRTAP3-1Q9BYR8 98 aa2.5□□□□□ -2.01
SCN1A-201ENST00000303395 OTOGQ6ZRI0 2925 aa2.49□□□□□ -2.01
SCN1A-201ENST00000303395 CRCT1Q9UGL9 99 aa2.49□□□□□ -2.01
SCN1A-201ENST00000303395 CFAP47Q6ZTR5 3102 aa2.48□□□□□ -2.01
SCN1A-201ENST00000303395 MYO15AQ9UKN7 3530 aa2.47□□□□□ -2.01
SCN1A-201ENST00000303395 KRTAP3-2Q9BYR7 98 aa2.46□□□□□ -2.02
SCN1A-201ENST00000303395 NBPF19A0A087WUL8 3843 aa2.44□□□□□ -2.02
SCN1A-201ENST00000303395 WDFY3Q8IZQ1 3526 aa2.42□□□□□ -2.02
SCN1A-201ENST00000303395 FBN3Q75N90 2809 aa2.41□□□□□ -2.02
SCN1A-201ENST00000303395 KRTAP10-12P60413 245 aa2.4□□□□□ -2.02
SCN1A-201ENST00000303395 FBN2P35556 2912 aa2.4□□□□□ -2.03
SCN1A-201ENST00000303395 KRTAP3-3Q9BYR6 98 aa2.39□□□□□ -2.03
SCN1A-201ENST00000303395 DMDP11532 3685 aa2.39□□□□□ -2.03
SCN1A-201ENST00000303395 LOC400499M0QZD8 3231 aa2.38□□□□□ -2.03
SCN1A-201ENST00000303395 ZFHX3Q15911 3703 aa2.38□□□□□ -2.03
SCN1A-201ENST00000303395 DCHS1Q96JQ0 3298 aa2.37□□□□□ -2.03
SCN1A-201ENST00000303395 RYR1P21817 5038 aa2.37□□□□□ -2.03
SCN1A-201ENST00000303395 KRTAP10-7P60409 375 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-201ENST00000303395 ASPMQ8IZT6 3477 aa2.33□□□□□ -2.04
SCN1A-201ENST00000303395 KRTAP10-5P60370 271 aa2.33□□□□□ -2.04
SCN1A-201ENST00000303395 KRTAP10-4P60372 401 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-201ENST00000303395 FBN1P35555 2871 aaKnown RBP2.29□□□□□ -2.04
SCN1A-201ENST00000303395 HUWE1Q7Z6Z7 4374 aaKnown RBP2.29□□□□□ -2.04
SCN1A-201ENST00000303395 KRTAP12-3P60328 96 aa2.28□□□□□ -2.04
SCN1A-201ENST00000303395 LAMA5O15230 3695 aa2.27□□□□□ -2.05
SCN1A-201ENST00000303395 SPRR5A0A1B0GTR4 108 aa2.27□□□□□ -2.05
SCN1A-201ENST00000303395 SPENQ96T58 3664 aaKnown RBP2.27□□□□□ -2.05
SCN1A-201ENST00000303395 BSNQ9UPA5 3926 aa2.27□□□□□ -2.05
SCN1A-201ENST00000303395 KRTAP8-1Q8IUC2 63 aa2.25□□□□□ -2.05
SCN1A-201ENST00000303395 RELNP78509 3460 aa2.24□□□□□ -2.05
SCN1A-201ENST00000303395 MT1HL1P0DM35 61 aa2.24□□□□□ -2.05
SCN1A-201ENST00000303395 ALMS1Q8TCU4 4167 aa2.23□□□□□ -2.05
SCN1A-201ENST00000303395 MYCBP2O75592 4640 aa2.22□□□□□ -2.05
SCN1A-201ENST00000303395 SPRR2GQ9BYE4 73 aa2.21□□□□□ -2.06
SCN1A-201ENST00000303395 SMG1Q96Q15 3661 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms