RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 FLNBO75369 2602 aaKnown RBP4.37□□□□□ -1.71
SCN9A-201ENST00000303354 KRTAP4-16G5E9R7 235 aaPredicted RBP4.36□□□□□ -1.71
SCN9A-201ENST00000303354 NIPBLQ6KC79 2804 aaeCLIP4.36□□□□□ -1.71
SCN9A-201ENST00000303354 CUBNO60494 3623 aa4.36□□□□□ -1.71
SCN9A-201ENST00000303354 FLNAP21333 2647 aaKnown RBP4.35□□□□□ -1.71
SCN9A-201ENST00000303354 DMDP11532 3685 aa4.34□□□□□ -1.71
SCN9A-201ENST00000303354 ITPR1Q14643 2758 aa4.34□□□□□ -1.71
SCN9A-201ENST00000303354 HELZ2Q9BYK8 2649 aaKnown RBP4.34□□□□□ -1.71
SCN9A-201ENST00000303354 NBEAL1Q6ZS30 2694 aa4.34□□□□□ -1.72
SCN9A-201ENST00000303354 KRTAP10-8P60410 259 aa4.33□□□□□ -1.72
SCN9A-201ENST00000303354 Q5XG85 94 aa4.33□□□□□ -1.72
SCN9A-201ENST00000303354 KALRNO60229 2985 aa4.33□□□□□ -1.72
SCN9A-201ENST00000303354 ZZEF1O43149 2961 aa4.3□□□□□ -1.72
SCN9A-201ENST00000303354 CHD6Q8TD26 2715 aa4.28□□□□□ -1.72
SCN9A-201ENST00000303354 KRTAP10-10P60014 251 aa4.27□□□□□ -1.73
SCN9A-201ENST00000303354 SPENQ96T58 3664 aaKnown RBP4.27□□□□□ -1.73
SCN9A-201ENST00000303354 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
SCN9A-201ENST00000303354 KRTAP29-1A8MX34 341 aaPredicted RBP4.27□□□□□ -1.73
SCN9A-201ENST00000303354 DCHS2Q6V1P9 2916 aa4.26□□□□□ -1.73
SCN9A-201ENST00000303354 ATRQ13535 2644 aa4.25□□□□□ -1.73
SCN9A-201ENST00000303354 C10orf95Q9H7T3 257 aa4.25□□□□□ -1.73
SCN9A-201ENST00000303354 VWFP04275 2813 aa4.25□□□□□ -1.73
SCN9A-201ENST00000303354 CELSR2Q9HCU4 2923 aa4.25□□□□□ -1.73
SCN9A-201ENST00000303354 H3BS24 57 aa4.25□□□□□ -1.73
SCN9A-201ENST00000303354 NSD1Q96L73 2696 aaPredicted RBP4.24□□□□□ -1.73
SCN9A-201ENST00000303354 DMXL1Q9Y485 3027 aa4.22□□□□□ -1.73
SCN9A-201ENST00000303354 STAB2Q8WWQ8 2551 aa4.22□□□□□ -1.73
SCN9A-201ENST00000303354 SMG1Q96Q15 3661 aaKnown RBP4.22□□□□□ -1.73
SCN9A-201ENST00000303354 NOTCH1P46531 2555 aa4.22□□□□□ -1.73
SCN9A-201ENST00000303354 SVEP1Q4LDE5 3571 aa4.22□□□□□ -1.73
SCN9A-201ENST00000303354 IGSF10Q6WRI0 2623 aa4.22□□□□□ -1.73
SCN9A-201ENST00000303354 CSMD2Q7Z408 3487 aa4.21□□□□□ -1.74
SCN9A-201ENST00000303354 XP32Q5T750 250 aa4.21□□□□□ -1.74
SCN9A-201ENST00000303354 TNP1P09430 55 aa4.2□□□□□ -1.74
SCN9A-201ENST00000303354 KRTAP13-1Q8IUC0 172 aa4.19□□□□□ -1.74
SCN9A-201ENST00000303354 KRTAP21-3Q3LHN1 58 aa4.19□□□□□ -1.74
SCN9A-201ENST00000303354 ITPR2Q14571 2701 aa4.18□□□□□ -1.74
SCN9A-201ENST00000303354 MAST4O15021 2626 aa4.18□□□□□ -1.74
SCN9A-201ENST00000303354 FLG2Q5D862 2391 aaPredicted RBP4.17□□□□□ -1.74
SCN9A-201ENST00000303354 HIVEP1P15822 2718 aa4.17□□□□□ -1.74
SCN9A-201ENST00000303354 BAHCC1Q9P281 2608 aa4.16□□□□□ -1.74
SCN9A-201ENST00000303354 MUC3AQ02505 3323 aa4.16□□□□□ -1.74
SCN9A-201ENST00000303354 RPS29P62273 56 aaKnown RBP4.16□□□□□ -1.74
SCN9A-201ENST00000303354 UBR5O95071 2799 aaPredicted RBP4.15□□□□□ -1.74
SCN9A-201ENST00000303354 NBEAL2Q6ZNJ1 2754 aa4.15□□□□□ -1.74
SCN9A-201ENST00000303354 ASB16-AS1Q495Z4 193 aa4.13□□□□□ -1.75
SCN9A-201ENST00000303354 KRTAP1-4P0C5Y4 121 aa4.12□□□□□ -1.75
SCN9A-201ENST00000303354 KRTAP25-1Q3LHN0 102 aa4.11□□□□□ -1.75
SCN9A-201ENST00000303354 TENM1Q9UKZ4 2725 aa4.09□□□□□ -1.75
SCN9A-201ENST00000303354 NDUFAF8A1L188 74 aa4.08□□□□□ -1.76
SCN9A-201ENST00000303354 ZFHX3Q15911 3703 aa4.08□□□□□ -1.76
SCN9A-201ENST00000303354 STAB1Q9NY15 2570 aa4.03□□□□□ -1.76
SCN9A-201ENST00000303354 ANK3Q12955 4377 aaKnown RBP4.02□□□□□ -1.77
SCN9A-201ENST00000303354 COL6A5A8TX70 2615 aa4.02□□□□□ -1.77
SCN9A-201ENST00000303354 TENM3Q9P273 2699 aa4.02□□□□□ -1.77
SCN9A-201ENST00000303354 TENM4Q6N022 2769 aa4.02□□□□□ -1.77
SCN9A-201ENST00000303354 FBN2P35556 2912 aa4.02□□□□□ -1.77
SCN9A-201ENST00000303354 TPRXLQ17RH7 258 aa4.01□□□□□ -1.77
SCN9A-201ENST00000303354 P0C880 135 aa4□□□□□ -1.77
SCN9A-201ENST00000303354 PKD1L1Q8TDX9 2849 aa4□□□□□ -1.77
SCN9A-201ENST00000303354 KMT2BQ9UMN6 2715 aaPredicted RBP3.99□□□□□ -1.77
SCN9A-201ENST00000303354 KRTAP13-3Q3SY46 172 aa3.99□□□□□ -1.77
SCN9A-201ENST00000303354 DMBT1Q9UGM3 2413 aaPredicted RBP3.99□□□□□ -1.77
SCN9A-201ENST00000303354 KRTAP16-1A8MUX0 517 aa3.98□□□□□ -1.77
SCN9A-201ENST00000303354 A6NN06 94 aa3.97□□□□□ -1.77
SCN9A-201ENST00000303354 PRO2289Q9P1D8 64 aa3.97□□□□□ -1.77
SCN9A-201ENST00000303354 CELSR1Q9NYQ6 3014 aa3.96□□□□□ -1.77
SCN9A-201ENST00000303354 TENM2Q9NT68 2774 aa3.95□□□□□ -1.78
SCN9A-201ENST00000303354 PDZD2O15018 2839 aa3.94□□□□□ -1.78
SCN9A-201ENST00000303354 H0YAA0 97 aa3.93□□□□□ -1.78
SCN9A-201ENST00000303354 CRCT1Q9UGL9 99 aa3.92□□□□□ -1.78
SCN9A-201ENST00000303354 OTOGQ6ZRI0 2925 aa3.9□□□□□ -1.78
SCN9A-201ENST00000303354 VPS13CQ709C8 3753 aa3.9□□□□□ -1.79
SCN9A-201ENST00000303354 HUWE1Q7Z6Z7 4374 aaKnown RBP3.86□□□□□ -1.79
SCN9A-201ENST00000303354 KRTAP12-2P59991 146 aa3.84□□□□□ -1.79
SCN9A-201ENST00000303354 SRRM2Q9UQ35 2752 aaKnown RBP3.84□□□□□ -1.8
SCN9A-201ENST00000303354 KRTAP4-5Q9BYR2 181 aa3.83□□□□□ -1.8
SCN9A-201ENST00000303354 CSMD3Q7Z407 3707 aa3.82□□□□□ -1.8
SCN9A-201ENST00000303354 MEGF8Q7Z7M0 2845 aa3.79□□□□□ -1.8
SCN9A-201ENST00000303354 BSNQ9UPA5 3926 aa3.78□□□□□ -1.8
SCN9A-201ENST00000303354 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
SCN9A-201ENST00000303354 TGP01266 2768 aa3.75□□□□□ -1.81
SCN9A-201ENST00000303354 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.81
SCN9A-201ENST00000303354 AKAP9Q99996 3911 aa3.68□□□□□ -1.82
SCN9A-201ENST00000303354 KRTAP3-1Q9BYR8 98 aa3.66□□□□□ -1.82
SCN9A-201ENST00000303354 KRTAP12-1P59990 96 aa3.65□□□□□ -1.83
SCN9A-201ENST00000303354 TRRAPQ9Y4A5 3859 aa3.63□□□□□ -1.83
SCN9A-201ENST00000303354 FBN1P35555 2871 aaKnown RBP3.62□□□□□ -1.83
SCN9A-201ENST00000303354 LORP23490 312 aaPredicted RBP3.61□□□□□ -1.83
SCN9A-201ENST00000303354 KRTAP13-4Q3LI77 160 aa3.61□□□□□ -1.83
SCN9A-201ENST00000303354 COL7A1Q02388 2944 aa3.6□□□□□ -1.83
SCN9A-201ENST00000303354 MT1HL1P0DM35 61 aa3.6□□□□□ -1.83
SCN9A-201ENST00000303354 DNAH9Q9NYC9 4486 aa3.56□□□□□ -1.84
SCN9A-201ENST00000303354 ZNF469Q96JG9 3925 aaPredicted RBP3.56□□□□□ -1.84
SCN9A-201ENST00000303354 ALMS1Q8TCU4 4167 aa3.52□□□□□ -1.85
SCN9A-201ENST00000303354 KRTAP10-12P60413 245 aa3.49□□□□□ -1.85
SCN9A-201ENST00000303354 FBN3Q75N90 2809 aa3.47□□□□□ -1.85
SCN9A-201ENST00000303354 KRTAP10-6P60371 365 aaPredicted RBP3.46□□□□□ -1.86
SCN9A-201ENST00000303354 DNAH1Q9P2D7 4330 aa3.45□□□□□ -1.86
SCN9A-201ENST00000303354 DNAH10Q8IVF4 4471 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms