RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 DMXL1Q9Y485 3027 aa7.28□□□□□ -1.24
PTCD1-201ENST00000292478 COL12A1Q99715 3063 aa7.28□□□□□ -1.24
PTCD1-201ENST00000292478 ADM2Q7Z4H4 148 aa7.27□□□□□ -1.25
PTCD1-201ENST00000292478 NOTCH1P46531 2555 aa7.26□□□□□ -1.25
PTCD1-201ENST00000292478 KRTAP13-2Q52LG2 175 aa7.25□□□□□ -1.25
PTCD1-201ENST00000292478 FLNCQ14315 2725 aa7.23□□□□□ -1.25
PTCD1-201ENST00000292478 UBR5O95071 2799 aaPredicted RBP7.23□□□□□ -1.25
PTCD1-201ENST00000292478 KRTAP21-3Q3LHN1 58 aa7.23□□□□□ -1.25
PTCD1-201ENST00000292478 BAHCC1Q9P281 2608 aa7.22□□□□□ -1.25
PTCD1-201ENST00000292478 ITPR1Q14643 2758 aa7.21□□□□□ -1.25
PTCD1-201ENST00000292478 HRNRQ86YZ3 2850 aaPredicted RBP7.2□□□□□ -1.26
PTCD1-201ENST00000292478 KMT2BQ9UMN6 2715 aaPredicted RBP7.18□□□□□ -1.26
PTCD1-201ENST00000292478 ZFHX4Q86UP3 3567 aa7.17□□□□□ -1.26
PTCD1-201ENST00000292478 NSD1Q96L73 2696 aaPredicted RBP7.14□□□□□ -1.27
PTCD1-201ENST00000292478 DCHS1Q96JQ0 3298 aa7.14□□□□□ -1.27
PTCD1-201ENST00000292478 H3BS24 57 aa7.13□□□□□ -1.27
PTCD1-201ENST00000292478 A6NN06 94 aa7.13□□□□□ -1.27
PTCD1-201ENST00000292478 ASPMQ8IZT6 3477 aa7.13□□□□□ -1.27
PTCD1-201ENST00000292478 ITPR2Q14571 2701 aa7.12□□□□□ -1.27
PTCD1-201ENST00000292478 UTP20O75691 2785 aaKnown RBP7.12□□□□□ -1.27
PTCD1-201ENST00000292478 DMDP11532 3685 aa7.12□□□□□ -1.27
PTCD1-201ENST00000292478 ASH1LQ9NR48 2969 aaKnown RBP7.09□□□□□ -1.27
PTCD1-201ENST00000292478 A8MUU9 505 aa7.09□□□□□ -1.27
PTCD1-201ENST00000292478 ZANQ9Y493 2812 aa7.09□□□□□ -1.27
PTCD1-201ENST00000292478 C20orf166-AS1Q96NR2 134 aa7.07□□□□□ -1.28
PTCD1-201ENST00000292478 KRTAP25-1Q3LHN0 102 aa7.05□□□□□ -1.28
PTCD1-201ENST00000292478 RELNP78509 3460 aa7.04□□□□□ -1.28
PTCD1-201ENST00000292478 LAMA5O15230 3695 aa7.04□□□□□ -1.28
PTCD1-201ENST00000292478 A8MU10 97 aa7.02□□□□□ -1.29
PTCD1-201ENST00000292478 SMG1Q96Q15 3661 aaKnown RBP7□□□□□ -1.29
PTCD1-201ENST00000292478 MUC3AQ02505 3323 aa6.99□□□□□ -1.29
PTCD1-201ENST00000292478 APCP25054 2843 aa6.98□□□□□ -1.29
PTCD1-201ENST00000292478 CSMD1Q96PZ7 3565 aa6.97□□□□□ -1.29
PTCD1-201ENST00000292478 HIVEP1P15822 2718 aa6.97□□□□□ -1.29
PTCD1-201ENST00000292478 KRTAP1-4P0C5Y4 121 aa6.95□□□□□ -1.3
PTCD1-201ENST00000292478 FBN2P35556 2912 aa6.94□□□□□ -1.3
PTCD1-201ENST00000292478 DCHS2Q6V1P9 2916 aa6.94□□□□□ -1.3
PTCD1-201ENST00000292478 CRYBG3Q68DQ2 2970 aa6.91□□□□□ -1.3
PTCD1-201ENST00000292478 CELSR2Q9HCU4 2923 aa6.91□□□□□ -1.3
PTCD1-201ENST00000292478 NF1P21359 2839 aa6.89□□□□□ -1.31
PTCD1-201ENST00000292478 KRTAP16-1A8MUX0 517 aa6.87□□□□□ -1.31
PTCD1-201ENST00000292478 NIPBLQ6KC79 2804 aaeCLIP6.87□□□□□ -1.31
PTCD1-201ENST00000292478 MXRA5Q9NR99 2828 aa6.84□□□□□ -1.31
PTCD1-201ENST00000292478 XP32Q5T750 250 aa6.84□□□□□ -1.32
PTCD1-201ENST00000292478 TNP1P09430 55 aa6.83□□□□□ -1.32
PTCD1-201ENST00000292478 SVEP1Q4LDE5 3571 aa6.79□□□□□ -1.32
PTCD1-201ENST00000292478 TPRXLQ17RH7 258 aa6.76□□□□□ -1.33
PTCD1-201ENST00000292478 CELSR1Q9NYQ6 3014 aa6.75□□□□□ -1.33
PTCD1-201ENST00000292478 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
PTCD1-201ENST00000292478 TENM4Q6N022 2769 aa6.74□□□□□ -1.33
PTCD1-201ENST00000292478 H0YAA0 97 aa6.66□□□□□ -1.34
PTCD1-201ENST00000292478 KRTAP13-3Q3SY46 172 aa6.65□□□□□ -1.35
PTCD1-201ENST00000292478 NDUFAF8A1L188 74 aa6.64□□□□□ -1.35
PTCD1-201ENST00000292478 SPENQ96T58 3664 aaKnown RBP6.64□□□□□ -1.35
PTCD1-201ENST00000292478 C10orf95Q9H7T3 257 aa6.64□□□□□ -1.35
PTCD1-201ENST00000292478 KRTAP10-8P60410 259 aa6.6□□□□□ -1.35
PTCD1-201ENST00000292478 BSNQ9UPA5 3926 aa6.57□□□□□ -1.36
PTCD1-201ENST00000292478 A0A1B0GVY2 172 aa6.57□□□□□ -1.36
PTCD1-201ENST00000292478 CUBNO60494 3623 aa6.54□□□□□ -1.36
PTCD1-201ENST00000292478 TENM3Q9P273 2699 aa6.52□□□□□ -1.37
PTCD1-201ENST00000292478 PRO2289Q9P1D8 64 aa6.51□□□□□ -1.37
PTCD1-201ENST00000292478 P0C880 135 aa6.5□□□□□ -1.37
PTCD1-201ENST00000292478 TENM1Q9UKZ4 2725 aa6.46□□□□□ -1.38
PTCD1-201ENST00000292478 VWFP04275 2813 aa6.43□□□□□ -1.38
PTCD1-201ENST00000292478 PDZD2O15018 2839 aa6.43□□□□□ -1.38
PTCD1-201ENST00000292478 KRTAP10-10P60014 251 aa6.42□□□□□ -1.38
PTCD1-201ENST00000292478 CSMD2Q7Z408 3487 aa6.4□□□□□ -1.38
PTCD1-201ENST00000292478 NBPF19A0A087WUL8 3843 aa6.39□□□□□ -1.39
PTCD1-201ENST00000292478 TENM2Q9NT68 2774 aa6.38□□□□□ -1.39
PTCD1-201ENST00000292478 TGP01266 2768 aa6.33□□□□□ -1.4
PTCD1-201ENST00000292478 ANK3Q12955 4377 aaKnown RBP6.31□□□□□ -1.4
PTCD1-201ENST00000292478 FBN1P35555 2871 aaKnown RBP6.26□□□□□ -1.41
PTCD1-201ENST00000292478 VPS13CQ709C8 3753 aa6.26□□□□□ -1.41
PTCD1-201ENST00000292478 OTOGQ6ZRI0 2925 aa6.25□□□□□ -1.41
PTCD1-201ENST00000292478 PKD1L1Q8TDX9 2849 aa6.25□□□□□ -1.41
PTCD1-201ENST00000292478 KRTAP12-2P59991 146 aa6.25□□□□□ -1.41
PTCD1-201ENST00000292478 KRTAP3-1Q9BYR8 98 aa6.22□□□□□ -1.41
PTCD1-201ENST00000292478 ZFHX3Q15911 3703 aa6.22□□□□□ -1.41
PTCD1-201ENST00000292478 KRTAP13-4Q3LI77 160 aa6.21□□□□□ -1.41
PTCD1-201ENST00000292478 KRTAP12-1P59990 96 aa6.19□□□□□ -1.42
PTCD1-201ENST00000292478 TRRAPQ9Y4A5 3859 aa6.17□□□□□ -1.42
PTCD1-201ENST00000292478 KRTAP10-6P60371 365 aaPredicted RBP6.05□□□□□ -1.44
PTCD1-201ENST00000292478 SRRM2Q9UQ35 2752 aaKnown RBP6.05□□□□□ -1.44
PTCD1-201ENST00000292478 ZNF469Q96JG9 3925 aaPredicted RBP6.01□□□□□ -1.45
PTCD1-201ENST00000292478 AKAP9Q99996 3911 aa5.99□□□□□ -1.45
PTCD1-201ENST00000292478 FBN3Q75N90 2809 aa5.96□□□□□ -1.45
PTCD1-201ENST00000292478 MT1HL1P0DM35 61 aa5.96□□□□□ -1.46
PTCD1-201ENST00000292478 HUWE1Q7Z6Z7 4374 aaKnown RBP5.92□□□□□ -1.46
PTCD1-201ENST00000292478 KRTAP10-4P60372 401 aaPredicted RBP5.87□□□□□ -1.47
PTCD1-201ENST00000292478 ALMS1Q8TCU4 4167 aa5.87□□□□□ -1.47
PTCD1-201ENST00000292478 MEGF8Q7Z7M0 2845 aa5.85□□□□□ -1.47
PTCD1-201ENST00000292478 KRTAP3-2Q9BYR7 98 aa5.85□□□□□ -1.47
PTCD1-201ENST00000292478 KRTAP3-3Q9BYR6 98 aa5.85□□□□□ -1.47
PTCD1-201ENST00000292478 KRTAP15-1Q3LI76 137 aa5.83□□□□□ -1.48
PTCD1-201ENST00000292478 CSMD3Q7Z407 3707 aa5.78□□□□□ -1.48
PTCD1-201ENST00000292478 KRTAP4-5Q9BYR2 181 aa5.74□□□□□ -1.49
PTCD1-201ENST00000292478 COL7A1Q02388 2944 aa5.7□□□□□ -1.5
PTCD1-201ENST00000292478 KRTAP23-1A1A580 65 aa5.68□□□□□ -1.5
PTCD1-201ENST00000292478 KRTAP10-12P60413 245 aa5.64□□□□□ -1.51
PTCD1-201ENST00000292478 DNAH9Q9NYC9 4486 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms