RNA–Protein interactions for RNA: ENST00000283254.11

SCN3A-201, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCN3A, Length 9,091 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-201ENST00000283254 KRTAP16-1A8MUX0 517 aa2.31□□□□□ -2.04
SCN3A-201ENST00000283254 ASH1LQ9NR48 2969 aaKnown RBP2.31□□□□□ -2.04
SCN3A-201ENST00000283254 FRYLO94915 3013 aa2.3□□□□□ -2.04
SCN3A-201ENST00000283254 LRBAP50851 2863 aa2.3□□□□□ -2.04
SCN3A-201ENST00000283254 FBN3Q75N90 2809 aa2.29□□□□□ -2.04
SCN3A-201ENST00000283254 HRNRQ86YZ3 2850 aaPredicted RBP2.29□□□□□ -2.04
SCN3A-201ENST00000283254 LAMA2P24043 3122 aaKnown RBP2.28□□□□□ -2.04
SCN3A-201ENST00000283254 KRTAP13-2Q52LG2 175 aa2.28□□□□□ -2.04
SCN3A-201ENST00000283254 PRO2289Q9P1D8 64 aa2.27□□□□□ -2.05
SCN3A-201ENST00000283254 KRTAP25-1Q3LHN0 102 aa2.27□□□□□ -2.05
SCN3A-201ENST00000283254 KRTAP13-1Q8IUC0 172 aa2.27□□□□□ -2.05
SCN3A-201ENST00000283254 CDH23Q9H251 3354 aa2.27□□□□□ -2.05
SCN3A-201ENST00000283254 LAMA3Q16787 3333 aa2.27□□□□□ -2.05
SCN3A-201ENST00000283254 CYSTM1Q9H1C7 97 aa2.26□□□□□ -2.05
SCN3A-201ENST00000283254 CFAP54Q96N23 3096 aa2.26□□□□□ -2.05
SCN3A-201ENST00000283254 XIRP2A4UGR9 3374 aa2.25□□□□□ -2.05
SCN3A-201ENST00000283254 NBEAQ8NFP9 2946 aa2.25□□□□□ -2.05
SCN3A-201ENST00000283254 TPRXLQ17RH7 258 aa2.25□□□□□ -2.05
SCN3A-201ENST00000283254 ZZEF1O43149 2961 aa2.24□□□□□ -2.05
SCN3A-201ENST00000283254 DMXL1Q9Y485 3027 aa2.23□□□□□ -2.05
SCN3A-201ENST00000283254 UNC80Q8N2C7 3258 aa2.23□□□□□ -2.05
SCN3A-201ENST00000283254 CRYBG3Q68DQ2 2970 aa2.23□□□□□ -2.05
SCN3A-201ENST00000283254 C10orf95Q9H7T3 257 aa2.23□□□□□ -2.05
SCN3A-201ENST00000283254 SZT2Q5T011 3432 aa2.23□□□□□ -2.05
SCN3A-201ENST00000283254 A6NN06 94 aa2.22□□□□□ -2.05
SCN3A-201ENST00000283254 USP34Q70CQ2 3546 aa2.22□□□□□ -2.05
SCN3A-201ENST00000283254 A8MU10 97 aa2.21□□□□□ -2.05
SCN3A-201ENST00000283254 XP32Q5T750 250 aa2.21□□□□□ -2.06
SCN3A-201ENST00000283254 KRTAP10-8P60410 259 aa2.21□□□□□ -2.06
SCN3A-201ENST00000283254 VCANP13611 3396 aa2.21□□□□□ -2.06
SCN3A-201ENST00000283254 NDUFAF8A1L188 74 aa2.2□□□□□ -2.06
SCN3A-201ENST00000283254 KRTAP11-1Q8IUC1 163 aa2.2□□□□□ -2.06
SCN3A-201ENST00000283254 PRUNE2Q8WUY3 3088 aa2.2□□□□□ -2.06
SCN3A-201ENST00000283254 DMXL2Q8TDJ6 3036 aa2.18□□□□□ -2.06
SCN3A-201ENST00000283254 MYO15AQ9UKN7 3530 aa2.18□□□□□ -2.06
SCN3A-201ENST00000283254 KRTAP7-1Q8IUC3 87 aa2.17□□□□□ -2.06
SCN3A-201ENST00000283254 KRTAP10-10P60014 251 aa2.17□□□□□ -2.06
SCN3A-201ENST00000283254 KRTAP1-4P0C5Y4 121 aa2.16□□□□□ -2.06
SCN3A-201ENST00000283254 WDFY3Q8IZQ1 3526 aa2.16□□□□□ -2.06
SCN3A-201ENST00000283254 P0C880 135 aa2.15□□□□□ -2.07
SCN3A-201ENST00000283254 CELSR3Q9NYQ7 3312 aa2.14□□□□□ -2.07
SCN3A-201ENST00000283254 OTOGQ6ZRI0 2925 aa2.14□□□□□ -2.07
SCN3A-201ENST00000283254 LAMA1P25391 3075 aa2.14□□□□□ -2.07
SCN3A-201ENST00000283254 VPS13AQ96RL7 3174 aa2.14□□□□□ -2.07
SCN3A-201ENST00000283254 FREM2Q5SZK8 3169 aa2.13□□□□□ -2.07
SCN3A-201ENST00000283254 KRTAP13-3Q3SY46 172 aa2.13□□□□□ -2.07
SCN3A-201ENST00000283254 COL12A1Q99715 3063 aa2.13□□□□□ -2.07
SCN3A-201ENST00000283254 COL6A3P12111 3177 aa2.13□□□□□ -2.07
SCN3A-201ENST00000283254 DMDP11532 3685 aa2.13□□□□□ -2.07
SCN3A-201ENST00000283254 SPEGQ15772 3267 aa2.12□□□□□ -2.07
SCN3A-201ENST00000283254 ATMQ13315 3056 aa2.12□□□□□ -2.07
SCN3A-201ENST00000283254 BOD1L1Q8NFC6 3051 aa2.12□□□□□ -2.07
SCN3A-201ENST00000283254 EYSQ5T1H1 3165 aa2.12□□□□□ -2.07
SCN3A-201ENST00000283254 ZFHX4Q86UP3 3567 aa2.11□□□□□ -2.07
SCN3A-201ENST00000283254 FBN2P35556 2912 aa2.11□□□□□ -2.07
SCN3A-201ENST00000283254 FBN1P35555 2871 aaKnown RBP2.1□□□□□ -2.07
SCN3A-201ENST00000283254 COL7A1Q02388 2944 aa2.09□□□□□ -2.07
SCN3A-201ENST00000283254 WDFY4Q6ZS81 3184 aa2.09□□□□□ -2.08
SCN3A-201ENST00000283254 A0A1B0GVY2 172 aa2.08□□□□□ -2.08
SCN3A-201ENST00000283254 SPENQ96T58 3664 aaKnown RBP2.08□□□□□ -2.08
SCN3A-201ENST00000283254 MEGF8Q7Z7M0 2845 aa2.08□□□□□ -2.08
SCN3A-201ENST00000283254 H0YAA0 97 aa2.08□□□□□ -2.08
SCN3A-201ENST00000283254 DCHS1Q96JQ0 3298 aa2.07□□□□□ -2.08
SCN3A-201ENST00000283254 MUC3AQ02505 3323 aa2.07□□□□□ -2.08
SCN3A-201ENST00000283254 ASPMQ8IZT6 3477 aa2.04□□□□□ -2.08
SCN3A-201ENST00000283254 KRTAP13-4Q3LI77 160 aa2.03□□□□□ -2.08
SCN3A-201ENST00000283254 NBPF19A0A087WUL8 3843 aa2.02□□□□□ -2.09
SCN3A-201ENST00000283254 AKAP9Q99996 3911 aa2.01□□□□□ -2.09
SCN3A-201ENST00000283254 SMG1Q96Q15 3661 aaKnown RBP2.01□□□□□ -2.09
SCN3A-201ENST00000283254 LAMA5O15230 3695 aa2.01□□□□□ -2.09
SCN3A-201ENST00000283254 ANK2Q01484 3957 aa2.01□□□□□ -2.09
SCN3A-201ENST00000283254 BSNQ9UPA5 3926 aa2□□□□□ -2.09
SCN3A-201ENST00000283254 ADGRG4Q8IZF6 3080 aa2□□□□□ -2.09
SCN3A-201ENST00000283254 CSMD1Q96PZ7 3565 aa1.99□□□□□ -2.09
SCN3A-201ENST00000283254 LOC400499M0QZD8 3231 aa1.98□□□□□ -2.09
SCN3A-201ENST00000283254 RYR1P21817 5038 aa1.98□□□□□ -2.09
SCN3A-201ENST00000283254 KRTAP12-2P59991 146 aa1.98□□□□□ -2.09
SCN3A-201ENST00000283254 CELSR1Q9NYQ6 3014 aa1.98□□□□□ -2.09
SCN3A-201ENST00000283254 KRTAP15-1Q3LI76 137 aa1.95□□□□□ -2.1
SCN3A-201ENST00000283254 CFAP47Q6ZTR5 3102 aa1.95□□□□□ -2.1
SCN3A-201ENST00000283254 DNAH3Q8TD57 4116 aa1.94□□□□□ -2.1
SCN3A-201ENST00000283254 SVEP1Q4LDE5 3571 aa1.93□□□□□ -2.1
SCN3A-201ENST00000283254 KRTAP12-1P59990 96 aa1.93□□□□□ -2.1
SCN3A-201ENST00000283254 ANK3Q12955 4377 aaKnown RBP1.92□□□□□ -2.1
SCN3A-201ENST00000283254 ZFHX3Q15911 3703 aa1.92□□□□□ -2.1
SCN3A-201ENST00000283254 DNHD1Q96M86 4753 aa1.92□□□□□ -2.1
SCN3A-201ENST00000283254 RELNP78509 3460 aa1.91□□□□□ -2.1
SCN3A-201ENST00000283254 INE1O15225 51 aa1.9□□□□□ -2.11
SCN3A-201ENST00000283254 KRTAP10-12P60413 245 aa1.89□□□□□ -2.11
SCN3A-201ENST00000283254 VPS13CQ709C8 3753 aa1.87□□□□□ -2.11
SCN3A-201ENST00000283254 DNAH7Q8WXX0 4024 aa1.86□□□□□ -2.11
SCN3A-201ENST00000283254 KRTAP23-1A1A580 65 aa1.85□□□□□ -2.11
SCN3A-201ENST00000283254 ZNF469Q96JG9 3925 aaPredicted RBP1.84□□□□□ -2.11
SCN3A-201ENST00000283254 TRRAPQ9Y4A5 3859 aa1.84□□□□□ -2.11
SCN3A-201ENST00000283254 KRTAP3-1Q9BYR8 98 aa1.84□□□□□ -2.12
SCN3A-201ENST00000283254 KRTAP10-6P60371 365 aaPredicted RBP1.83□□□□□ -2.12
SCN3A-201ENST00000283254 MT1HL1P0DM35 61 aa1.83□□□□□ -2.12
SCN3A-201ENST00000283254 HUWE1Q7Z6Z7 4374 aaKnown RBP1.82□□□□□ -2.12
SCN3A-201ENST00000283254 KRTAP12-3P60328 96 aa1.82□□□□□ -2.12
SCN3A-201ENST00000283254 CSMD2Q7Z408 3487 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms