RNA–Protein interactions for RNA: ENST00000283254.11

SCN3A-201, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCN3A, Length 9,091 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-201ENST00000283254 DCAF8L2P0C7V8 631 aa6.86□□□□□ -1.31
SCN3A-201ENST00000283254 PELP1Q8IZL8 1130 aaKnown RBP6.59□□□□□ -1.35
SCN3A-201ENST00000283254 FAM9AQ8IZU1 332 aaPredicted RBP6.55□□□□□ -1.36
SCN3A-201ENST00000283254 APLP2Q06481 763 aa6.45□□□□□ -1.38
SCN3A-201ENST00000283254 SUPT5HO00267 1087 aaKnown RBP6.4□□□□□ -1.38
SCN3A-201ENST00000283254 NISCHQ9Y2I1 1504 aa6.36□□□□□ -1.39
SCN3A-201ENST00000283254 CCER1Q8TC90 406 aaPredicted RBP6.26□□□□□ -1.41
SCN3A-201ENST00000283254 SHROOM4Q9ULL8 1493 aa6.2□□□□□ -1.42
SCN3A-201ENST00000283254 ERICH6Q7L0X2 663 aa6.13□□□□□ -1.43
SCN3A-201ENST00000283254 CENPBP07199 599 aaPredicted RBP6.13□□□□□ -1.43
SCN3A-201ENST00000283254 EHMT2Q96KQ7 1210 aa6.12□□□□□ -1.43
SCN3A-201ENST00000283254 ZEB1P37275 1124 aaPredicted RBP6.1□□□□□ -1.43
SCN3A-201ENST00000283254 NEFLP07196 543 aa6.09□□□□□ -1.44
SCN3A-201ENST00000283254 TRIM41Q8WV44 630 aa6.02□□□□□ -1.45
SCN3A-201ENST00000283254 ATP1B4Q9UN42 357 aaPredicted RBP6.02□□□□□ -1.45
SCN3A-201ENST00000283254 UBTFP17480 764 aaKnown RBP6.01□□□□□ -1.45
SCN3A-201ENST00000283254 PCGF6Q9BYE7 350 aa5.99□□□□□ -1.45
SCN3A-201ENST00000283254 DAXXQ9UER7 740 aaPredicted RBP5.98□□□□□ -1.45
SCN3A-201ENST00000283254 TTBK1Q5TCY1 1321 aaPredicted RBP5.97□□□□□ -1.45
SCN3A-201ENST00000283254 RANGAP1P46060 587 aaPredicted RBP5.97□□□□□ -1.45
SCN3A-201ENST00000283254 MYT1Q01538 1121 aa5.96□□□□□ -1.45
SCN3A-201ENST00000283254 YTHDC1Q96MU7 727 aaKnown RBP5.95□□□□□ -1.46
SCN3A-201ENST00000283254 MYT1LQ9UL68 1186 aa5.95□□□□□ -1.46
SCN3A-201ENST00000283254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.91□□□□□ -1.46
SCN3A-201ENST00000283254 HNRNPUL2Q1KMD3 747 aaKnown RBP5.91□□□□□ -1.46
SCN3A-201ENST00000283254 ZNF316A6NFI3 1004 aaPredicted RBP5.79□□□□□ -1.48
SCN3A-201ENST00000283254 POLR3GLQ9BT43 218 aa5.79□□□□□ -1.48
SCN3A-201ENST00000283254 CLSPNQ9HAW4 1339 aa5.78□□□□□ -1.48
SCN3A-201ENST00000283254 ZBTB47Q9UFB7 747 aaPredicted RBP5.78□□□□□ -1.48
SCN3A-201ENST00000283254 SLC4A1APQ9BWU0 796 aaKnown RBP5.77□□□□□ -1.49
SCN3A-201ENST00000283254 RTL5Q5HYW3 569 aaPredicted RBP5.77□□□□□ -1.49
SCN3A-201ENST00000283254 NEFMP07197 916 aa5.74□□□□□ -1.49
SCN3A-201ENST00000283254 TRIM26Q12899 539 aaPredicted RBP5.74□□□□□ -1.49
SCN3A-201ENST00000283254 ITGAEP38570 1179 aa5.73□□□□□ -1.49
SCN3A-201ENST00000283254 CHIC1Q5VXU3 224 aa5.73□□□□□ -1.49
SCN3A-201ENST00000283254 ESF1Q9H501 851 aaKnown RBP5.69□□□□□ -1.5
SCN3A-201ENST00000283254 CCDC180Q9P1Z9 1646 aa5.66□□□□□ -1.5
SCN3A-201ENST00000283254 CDK11AQ9UQ88 783 aaPredicted RBP5.66□□□□□ -1.5
SCN3A-201ENST00000283254 TRIM52Q96A61 297 aa5.65□□□□□ -1.5
SCN3A-201ENST00000283254 CANXP27824 592 aaKnown RBP5.65□□□□□ -1.5
SCN3A-201ENST00000283254 FAM50AQ14320 339 aaKnown RBP5.64□□□□□ -1.51
SCN3A-201ENST00000283254 HRCP23327 699 aa5.63□□□□□ -1.51
SCN3A-201ENST00000283254 BCANQ96GW7 911 aa5.63□□□□□ -1.51
SCN3A-201ENST00000283254 ZNF326Q5BKZ1 582 aaKnown RBP5.61□□□□□ -1.51
SCN3A-201ENST00000283254 FBLN2P98095 1184 aa5.61□□□□□ -1.51
SCN3A-201ENST00000283254 CNGB1Q14028 1251 aaPredicted RBP5.61□□□□□ -1.51
SCN3A-201ENST00000283254 SLC24A1O60721 1099 aa5.6□□□□□ -1.51
SCN3A-201ENST00000283254 PPARGC1BQ86YN6 1023 aaKnown RBP5.6□□□□□ -1.51
SCN3A-201ENST00000283254 ANP32CO43423 234 aa5.6□□□□□ -1.51
SCN3A-201ENST00000283254 NPM1P06748 294 aaKnown RBP eCLIP5.58□□□□□ -1.52
SCN3A-201ENST00000283254 ANP32BQ92688 251 aaKnown RBP5.58□□□□□ -1.52
SCN3A-201ENST00000283254 STAG3Q9UJ98 1225 aa5.56□□□□□ -1.52
SCN3A-201ENST00000283254 ABCC9O60706 1549 aa5.55□□□□□ -1.52
SCN3A-201ENST00000283254 NPM2Q86SE8 214 aaKnown RBP5.55□□□□□ -1.52
SCN3A-201ENST00000283254 UPF2Q9HAU5 1272 aaKnown RBP5.55□□□□□ -1.52
SCN3A-201ENST00000283254 DIEXFQ68CQ4 756 aaKnown RBP5.54□□□□□ -1.52
SCN3A-201ENST00000283254 CDK11BP21127 795 aaKnown RBP5.54□□□□□ -1.52
SCN3A-201ENST00000283254 HSP90AA1P07900 732 aaKnown RBP5.53□□□□□ -1.52
SCN3A-201ENST00000283254 ACIN1Q9UKV3 1341 aaKnown RBP5.53□□□□□ -1.52
SCN3A-201ENST00000283254 ANP32AP39687 249 aaKnown RBP5.53□□□□□ -1.52
SCN3A-201ENST00000283254 NEUROD1Q13562 356 aa5.51□□□□□ -1.53
SCN3A-201ENST00000283254 PABPN1Q86U42 306 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN3A-201ENST00000283254 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.49□□□□□ -1.53
SCN3A-201ENST00000283254 ZNF777Q9ULD5 760 aaPredicted RBP5.49□□□□□ -1.53
SCN3A-201ENST00000283254 TONSLQ96HA7 1378 aa5.49□□□□□ -1.53
SCN3A-201ENST00000283254 MYH16Q9H6N6 1097 aa5.48□□□□□ -1.53
SCN3A-201ENST00000283254 EIF5BO60841 1220 aaKnown RBP5.46□□□□□ -1.53
SCN3A-201ENST00000283254 BCL11AQ9H165 835 aa5.46□□□□□ -1.54
SCN3A-201ENST00000283254 CHGAP10645 457 aaKnown RBP5.44□□□□□ -1.54
SCN3A-201ENST00000283254 LOC105371045A0A1W2PR82 267 aa5.44□□□□□ -1.54
SCN3A-201ENST00000283254 PPP1R15AO75807 674 aaPredicted RBP5.44□□□□□ -1.54
SCN3A-201ENST00000283254 TSPY4P0CV99 314 aa5.44□□□□□ -1.54
SCN3A-201ENST00000283254 TSPY10P0CW01 314 aa5.44□□□□□ -1.54
SCN3A-201ENST00000283254 CSRNP3Q8WYN3 585 aa5.44□□□□□ -1.54
SCN3A-201ENST00000283254 GLIPR1L2Q4G1C9 344 aa5.43□□□□□ -1.54
SCN3A-201ENST00000283254 ARID3CA6NKF2 412 aa5.42□□□□□ -1.54
SCN3A-201ENST00000283254 C14orf37Q86TY3 774 aa5.42□□□□□ -1.54
SCN3A-201ENST00000283254 WDR43Q15061 677 aaKnown RBP eCLIP5.41□□□□□ -1.54
SCN3A-201ENST00000283254 ANP32EQ9BTT0 268 aa5.41□□□□□ -1.54
SCN3A-201ENST00000283254 SCAF1Q9H7N4 1312 aaKnown RBP5.4□□□□□ -1.54
SCN3A-201ENST00000283254 CDCA8Q53HL2 280 aa5.4□□□□□ -1.54
SCN3A-201ENST00000283254 A0A0G2JS52 829 aa5.4□□□□□ -1.55
SCN3A-201ENST00000283254 HAP1P54257 671 aaPredicted RBP5.4□□□□□ -1.55
SCN3A-201ENST00000283254 ZRSR1Q15695 479 aaKnown RBP5.39□□□□□ -1.55
SCN3A-201ENST00000283254 MTUS2Q5JR59 1369 aa5.39□□□□□ -1.55
SCN3A-201ENST00000283254 CHMP7Q8WUX9 453 aaPredicted RBP5.38□□□□□ -1.55
SCN3A-201ENST00000283254 CFAP53Q96M91 514 aa5.38□□□□□ -1.55
SCN3A-201ENST00000283254 P3H3Q8IVL6 736 aa5.38□□□□□ -1.55
SCN3A-201ENST00000283254 GOLGA6L22H0YM25 854 aa5.38□□□□□ -1.55
SCN3A-201ENST00000283254 CHMP4BQ9H444 224 aaKnown RBP5.38□□□□□ -1.55
SCN3A-201ENST00000283254 NCLP19338 710 aaKnown RBP5.37□□□□□ -1.55
SCN3A-201ENST00000283254 RSF1Q96T23 1441 aaPredicted RBP5.37□□□□□ -1.55
SCN3A-201ENST00000283254 PLPPR3Q6T4P5 718 aa5.37□□□□□ -1.55
SCN3A-201ENST00000283254 TMC1Q8TDI8 760 aa5.37□□□□□ -1.55
SCN3A-201ENST00000283254 SCRIBQ14160 1630 aa5.36□□□□□ -1.55
SCN3A-201ENST00000283254 EIF4G2P78344 907 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN3A-201ENST00000283254 CASC1Q6TDU7 716 aa5.36□□□□□ -1.55
SCN3A-201ENST00000283254 BECN1Q14457 450 aa5.35□□□□□ -1.55
SCN3A-201ENST00000283254 CCDC136Q96JN2 1154 aa5.35□□□□□ -1.55
SCN3A-201ENST00000283254 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms