RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 COL12A1Q99715 3063 aa11.05□□□□□ -0.64
UPF1-201ENST00000262803 KRTAP11-1Q8IUC1 163 aa11.05□□□□□ -0.64
UPF1-201ENST00000262803 NOTCH2NLQ7Z3S9 236 aa11.05□□□□□ -0.64
UPF1-201ENST00000262803 ASH1LQ9NR48 2969 aaKnown RBP11.02□□□□□ -0.65
UPF1-201ENST00000262803 UTP20O75691 2785 aaKnown RBP11.01□□□□□ -0.65
UPF1-201ENST00000262803 KRTAP7-1Q8IUC3 87 aa11.01□□□□□ -0.65
UPF1-201ENST00000262803 BOD1L1Q8NFC6 3051 aa11□□□□□ -0.65
UPF1-201ENST00000262803 LRBAP50851 2863 aa10.97□□□□□ -0.65
UPF1-201ENST00000262803 Q6ZRN7 208 aaPredicted RBP10.97□□□□□ -0.65
UPF1-201ENST00000262803 APCP25054 2843 aa10.92□□□□□ -0.66
UPF1-201ENST00000262803 SPATA8Q6RVD6 105 aa10.91□□□□□ -0.66
UPF1-201ENST00000262803 HIVEP1P15822 2718 aa10.89□□□□□ -0.67
UPF1-201ENST00000262803 NIPBLQ6KC79 2804 aaeCLIP10.85□□□□□ -0.676e-6■■■□□ 16.7
UPF1-201ENST00000262803 ZZEF1O43149 2961 aa10.83□□□□□ -0.68
UPF1-201ENST00000262803 KRTAP13-1Q8IUC0 172 aa10.82□□□□□ -0.68
UPF1-201ENST00000262803 A8MUU9 505 aa10.81□□□□□ -0.68
UPF1-201ENST00000262803 CELSR2Q9HCU4 2923 aa10.8□□□□□ -0.68
UPF1-201ENST00000262803 WDFY3Q8IZQ1 3526 aa10.78□□□□□ -0.68
UPF1-201ENST00000262803 KMT2BQ9UMN6 2715 aaPredicted RBP10.77□□□□□ -0.68
UPF1-201ENST00000262803 KRTAP13-2Q52LG2 175 aa10.75□□□□□ -0.69
UPF1-201ENST00000262803 DMXL1Q9Y485 3027 aa10.73□□□□□ -0.69
UPF1-201ENST00000262803 ZANQ9Y493 2812 aa10.7□□□□□ -0.7
UPF1-201ENST00000262803 CFAP47Q6ZTR5 3102 aa10.7□□□□□ -0.7
UPF1-201ENST00000262803 C20orf166-AS1Q96NR2 134 aa10.69□□□□□ -0.7
UPF1-201ENST00000262803 A6NN06 94 aa10.68□□□□□ -0.7
UPF1-201ENST00000262803 TENM4Q6N022 2769 aa10.66□□□□□ -0.7
UPF1-201ENST00000262803 ASPMQ8IZT6 3477 aa10.65□□□□□ -0.7
UPF1-201ENST00000262803 DCHS2Q6V1P9 2916 aa10.64□□□□□ -0.71
UPF1-201ENST00000262803 A8MU10 97 aa10.61□□□□□ -0.71
UPF1-201ENST00000262803 KRTAP25-1Q3LHN0 102 aa10.6□□□□□ -0.71
UPF1-201ENST00000262803 LOC400499M0QZD8 3231 aa10.6□□□□□ -0.71
UPF1-201ENST00000262803 TNP1P09430 55 aa10.59□□□□□ -0.71
UPF1-201ENST00000262803 CRYBG3Q68DQ2 2970 aa10.58□□□□□ -0.72
UPF1-201ENST00000262803 LAMA5O15230 3695 aa10.55□□□□□ -0.72
UPF1-201ENST00000262803 DCHS1Q96JQ0 3298 aa10.49□□□□□ -0.73
UPF1-201ENST00000262803 HRNRQ86YZ3 2850 aaPredicted RBP10.45□□□□□ -0.74
UPF1-201ENST00000262803 PP632Q6XCG6 107 aa10.43□□□□□ -0.74
UPF1-201ENST00000262803 FBN2P35556 2912 aa10.42□□□□□ -0.74
UPF1-201ENST00000262803 NF1P21359 2839 aa10.41□□□□□ -0.74
UPF1-201ENST00000262803 KRTAP16-1A8MUX0 517 aa10.4□□□□□ -0.74
UPF1-201ENST00000262803 ZFHX4Q86UP3 3567 aa10.38□□□□□ -0.75
UPF1-201ENST00000262803 TPRXLQ17RH7 258 aa10.28□□□□□ -0.76
UPF1-201ENST00000262803 TENM3Q9P273 2699 aa10.27□□□□□ -0.76
UPF1-201ENST00000262803 XP32Q5T750 250 aa10.27□□□□□ -0.77
UPF1-201ENST00000262803 KRTAP1-4P0C5Y4 121 aa10.25□□□□□ -0.77
UPF1-201ENST00000262803 TENM1Q9UKZ4 2725 aa10.17□□□□□ -0.78
UPF1-201ENST00000262803 RELNP78509 3460 aa10.15□□□□□ -0.78
UPF1-201ENST00000262803 PRO2289Q9P1D8 64 aa10.13□□□□□ -0.79
UPF1-201ENST00000262803 NDUFAF8A1L188 74 aa10.13□□□□□ -0.79
UPF1-201ENST00000262803 C10orf95Q9H7T3 257 aa10.12□□□□□ -0.79
UPF1-201ENST00000262803 KRTAP10-8P60410 259 aa10.1□□□□□ -0.79
UPF1-201ENST00000262803 MXRA5Q9NR99 2828 aa10.09□□□□□ -0.79
UPF1-201ENST00000262803 SPENQ96T58 3664 aaKnown RBP10.08□□□□□ -0.8
UPF1-201ENST00000262803 CELSR1Q9NYQ6 3014 aa10.06□□□□□ -0.8
UPF1-201ENST00000262803 SMG1Q96Q15 3661 aaKnown RBP10.05□□□□□ -0.8
UPF1-201ENST00000262803 H0YAA0 97 aa9.99□□□□□ -0.81
UPF1-201ENST00000262803 TGP01266 2768 aa9.95□□□□□ -0.82
UPF1-201ENST00000262803 TENM2Q9NT68 2774 aa9.95□□□□□ -0.82
UPF1-201ENST00000262803 KRTAP13-3Q3SY46 172 aa9.94□□□□□ -0.82
UPF1-201ENST00000262803 KRTAP10-10P60014 251 aa9.93□□□□□ -0.82
UPF1-201ENST00000262803 BSNQ9UPA5 3926 aa9.9□□□□□ -0.83
UPF1-201ENST00000262803 A0A1B0GVY2 172 aa9.88□□□□□ -0.83
UPF1-201ENST00000262803 PKD1L1Q8TDX9 2849 aa9.87□□□□□ -0.83
UPF1-201ENST00000262803 P0C880 135 aa9.83□□□□□ -0.84
UPF1-201ENST00000262803 PDZD2O15018 2839 aa9.78□□□□□ -0.84
UPF1-201ENST00000262803 VWFP04275 2813 aa9.72□□□□□ -0.85
UPF1-201ENST00000262803 SVEP1Q4LDE5 3571 aa9.61□□□□□ -0.87
UPF1-201ENST00000262803 FBN1P35555 2871 aaKnown RBP9.56□□□□□ -0.88
UPF1-201ENST00000262803 CSMD2Q7Z408 3487 aa9.52□□□□□ -0.89
UPF1-201ENST00000262803 CSMD1Q96PZ7 3565 aa9.48□□□□□ -0.89
UPF1-201ENST00000262803 VPS13CQ709C8 3753 aa9.42□□□□□ -0.9
UPF1-201ENST00000262803 KRTAP13-4Q3LI77 160 aa9.39□□□□□ -0.91
UPF1-201ENST00000262803 SRRM2Q9UQ35 2752 aaKnown RBP9.37□□□□□ -0.91
UPF1-201ENST00000262803 KRTAP12-2P59991 146 aa9.36□□□□□ -0.91
UPF1-201ENST00000262803 OTOGQ6ZRI0 2925 aa9.34□□□□□ -0.91
UPF1-201ENST00000262803 KRTAP3-1Q9BYR8 98 aa9.29□□□□□ -0.92
UPF1-201ENST00000262803 FBN3Q75N90 2809 aa9.29□□□□□ -0.92
UPF1-201ENST00000262803 NBPF19A0A087WUL8 3843 aa9.27□□□□□ -0.92
UPF1-201ENST00000262803 KRTAP12-1P59990 96 aa9.22□□□□□ -0.93
UPF1-201ENST00000262803 ZFHX3Q15911 3703 aa9.21□□□□□ -0.94
UPF1-201ENST00000262803 MEGF8Q7Z7M0 2845 aa9.13□□□□□ -0.95
UPF1-201ENST00000262803 ZNF469Q96JG9 3925 aaPredicted RBP9.1□□□□□ -0.95
UPF1-201ENST00000262803 CUBNO60494 3623 aa9.08□□□□□ -0.96
UPF1-201ENST00000262803 COL7A1Q02388 2944 aa9.04□□□□□ -0.96
UPF1-201ENST00000262803 KRTAP10-6P60371 365 aaPredicted RBP9.03□□□□□ -0.96
UPF1-201ENST00000262803 KRTAP15-1Q3LI76 137 aa8.99□□□□□ -0.97
UPF1-201ENST00000262803 ANK3Q12955 4377 aaKnown RBP8.96□□□□□ -0.98
UPF1-201ENST00000262803 TRRAPQ9Y4A5 3859 aa8.85□□□□□ -0.99
UPF1-201ENST00000262803 AKAP9Q99996 3911 aa8.82□□□□□ -1
UPF1-201ENST00000262803 MT1HL1P0DM35 61 aa8.76□□□□□ -1.01
UPF1-201ENST00000262803 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
UPF1-201ENST00000262803 KRTAP3-3Q9BYR6 98 aa8.7□□□□□ -1.02
UPF1-201ENST00000262803 INE1O15225 51 aa8.64□□□□□ -1.03
UPF1-201ENST00000262803 KRTAP10-12P60413 245 aa8.62□□□□□ -1.03
UPF1-201ENST00000262803 KRTAP10-4P60372 401 aaPredicted RBP8.6□□□□□ -1.03
UPF1-201ENST00000262803 KRTAP23-1A1A580 65 aa8.57□□□□□ -1.04
UPF1-201ENST00000262803 HUWE1Q7Z6Z7 4374 aaKnown RBP8.46□□□□□ -1.06
UPF1-201ENST00000262803 KRTAP4-5Q9BYR2 181 aa8.39□□□□□ -1.07
UPF1-201ENST00000262803 KRTAP12-3P60328 96 aa8.33□□□□□ -1.08
UPF1-201ENST00000262803 CRCT1Q9UGL9 99 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms