RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 H3BS24 57 aa10.66□□□□□ -0.7
SMARCC1-201ENST00000254480 FLNCQ14315 2725 aa10.64□□□□□ -0.71
SMARCC1-201ENST00000254480 APCP25054 2843 aa10.64□□□□□ -0.71
SMARCC1-201ENST00000254480 A8MU10 97 aa10.62□□□□□ -0.71
SMARCC1-201ENST00000254480 KRTAP13-2Q52LG2 175 aa10.59□□□□□ -0.71
SMARCC1-201ENST00000254480 EYSQ5T1H1 3165 aa10.58□□□□□ -0.72
SMARCC1-201ENST00000254480 KMT2BQ9UMN6 2715 aaPredicted RBP10.57□□□□□ -0.72
SMARCC1-201ENST00000254480 A0A0A0MQY5 61 aa10.55□□□□□ -0.72
SMARCC1-201ENST00000254480 ZZEF1O43149 2961 aa10.55□□□□□ -0.72
SMARCC1-201ENST00000254480 CELSR2Q9HCU4 2923 aa10.52□□□□□ -0.73
SMARCC1-201ENST00000254480 A8MUU9 505 aa10.5□□□□□ -0.73
SMARCC1-201ENST00000254480 SPTBN5Q9NRC6 3674 aaKnown RBP10.49□□□□□ -0.73
SMARCC1-201ENST00000254480 USP34Q70CQ2 3546 aa10.45□□□□□ -0.74
SMARCC1-201ENST00000254480 TENM4Q6N022 2769 aa10.44□□□□□ -0.74
SMARCC1-201ENST00000254480 C20orf166-AS1Q96NR2 134 aa10.42□□□□□ -0.74
SMARCC1-201ENST00000254480 ASB16-AS1Q495Z4 193 aa10.41□□□□□ -0.74
SMARCC1-201ENST00000254480 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.74
SMARCC1-201ENST00000254480 DCHS2Q6V1P9 2916 aa10.35□□□□□ -0.75
SMARCC1-201ENST00000254480 RPS29P62273 56 aaKnown RBP10.34□□□□□ -0.75
SMARCC1-201ENST00000254480 MYO15AQ9UKN7 3530 aa10.3□□□□□ -0.76
SMARCC1-201ENST00000254480 DMXL1Q9Y485 3027 aa10.29□□□□□ -0.76
SMARCC1-201ENST00000254480 ZANQ9Y493 2812 aa10.23□□□□□ -0.77
SMARCC1-201ENST00000254480 KRTAP25-1Q3LHN0 102 aa10.23□□□□□ -0.77
SMARCC1-201ENST00000254480 LOC400499M0QZD8 3231 aa10.22□□□□□ -0.77
SMARCC1-201ENST00000254480 A6NN06 94 aa10.2□□□□□ -0.78
SMARCC1-201ENST00000254480 NIPBLQ6KC79 2804 aaeCLIP10.19□□□□□ -0.782e-6■■□□□ 13.1
SMARCC1-201ENST00000254480 A0A1B0GVY2 172 aa10.17□□□□□ -0.78
SMARCC1-201ENST00000254480 TNRC18O15417 2968 aaPredicted RBP10.15□□□□□ -0.79
SMARCC1-201ENST00000254480 FBN2P35556 2912 aa10.1□□□□□ -0.79
SMARCC1-201ENST00000254480 NDUFAF8A1L188 74 aa10.05□□□□□ -0.8
SMARCC1-201ENST00000254480 TNP1P09430 55 aa10.03□□□□□ -0.8
SMARCC1-201ENST00000254480 C10orf95Q9H7T3 257 aa10.02□□□□□ -0.81
SMARCC1-201ENST00000254480 WDFY3Q8IZQ1 3526 aa10.02□□□□□ -0.81
SMARCC1-201ENST00000254480 NF1P21359 2839 aa10.01□□□□□ -0.81
SMARCC1-201ENST00000254480 KRTAP1-4P0C5Y4 121 aa10.01□□□□□ -0.81
SMARCC1-201ENST00000254480 XP32Q5T750 250 aa10□□□□□ -0.81
SMARCC1-201ENST00000254480 TENM1Q9UKZ4 2725 aa10□□□□□ -0.81
SMARCC1-201ENST00000254480 HRNRQ86YZ3 2850 aaPredicted RBP9.98□□□□□ -0.81
SMARCC1-201ENST00000254480 KRTAP16-1A8MUX0 517 aa9.97□□□□□ -0.81
SMARCC1-201ENST00000254480 KRTAP10-8P60410 259 aa9.97□□□□□ -0.81
SMARCC1-201ENST00000254480 RELNP78509 3460 aa9.95□□□□□ -0.82
SMARCC1-201ENST00000254480 TENM3Q9P273 2699 aa9.92□□□□□ -0.82
SMARCC1-201ENST00000254480 KRTAP21-3Q3LHN1 58 aa9.92□□□□□ -0.82
SMARCC1-201ENST00000254480 ASPMQ8IZT6 3477 aa9.9□□□□□ -0.82
SMARCC1-201ENST00000254480 CELSR1Q9NYQ6 3014 aa9.89□□□□□ -0.83
SMARCC1-201ENST00000254480 TENM2Q9NT68 2774 aa9.89□□□□□ -0.83
SMARCC1-201ENST00000254480 DCHS1Q96JQ0 3298 aa9.83□□□□□ -0.84
SMARCC1-201ENST00000254480 PKD1L1Q8TDX9 2849 aa9.81□□□□□ -0.84
SMARCC1-201ENST00000254480 ZFHX4Q86UP3 3567 aa9.75□□□□□ -0.85
SMARCC1-201ENST00000254480 KRTAP10-10P60014 251 aa9.75□□□□□ -0.85
SMARCC1-201ENST00000254480 H0YAA0 97 aa9.74□□□□□ -0.85
SMARCC1-201ENST00000254480 VWFP04275 2813 aa9.7□□□□□ -0.86
SMARCC1-201ENST00000254480 LAMA5O15230 3695 aa9.67□□□□□ -0.86
SMARCC1-201ENST00000254480 TPRXLQ17RH7 258 aa9.65□□□□□ -0.86
SMARCC1-201ENST00000254480 P0C880 135 aa9.64□□□□□ -0.87
SMARCC1-201ENST00000254480 TGP01266 2768 aa9.63□□□□□ -0.87
SMARCC1-201ENST00000254480 NBPF19A0A087WUL8 3843 aa9.62□□□□□ -0.87
SMARCC1-201ENST00000254480 KRTAP13-3Q3SY46 172 aa9.59□□□□□ -0.87
SMARCC1-201ENST00000254480 CSMD1Q96PZ7 3565 aa9.58□□□□□ -0.88
SMARCC1-201ENST00000254480 MXRA5Q9NR99 2828 aa9.54□□□□□ -0.88
SMARCC1-201ENST00000254480 PP632Q6XCG6 107 aa9.5□□□□□ -0.89
SMARCC1-201ENST00000254480 PDZD2O15018 2839 aa9.45□□□□□ -0.9
SMARCC1-201ENST00000254480 ZFHX3Q15911 3703 aa9.37□□□□□ -0.91
SMARCC1-201ENST00000254480 PRO2289Q9P1D8 64 aa9.36□□□□□ -0.91
SMARCC1-201ENST00000254480 DMDP11532 3685 aa9.35□□□□□ -0.91
SMARCC1-201ENST00000254480 FBN1P35555 2871 aaKnown RBP9.32□□□□□ -0.92
SMARCC1-201ENST00000254480 CUBNO60494 3623 aa9.31□□□□□ -0.92
SMARCC1-201ENST00000254480 SMG1Q96Q15 3661 aaKnown RBP9.31□□□□□ -0.92
SMARCC1-201ENST00000254480 SRRM2Q9UQ35 2752 aaKnown RBP9.26□□□□□ -0.93
SMARCC1-201ENST00000254480 KRTAP12-2P59991 146 aa9.26□□□□□ -0.93
SMARCC1-201ENST00000254480 SVEP1Q4LDE5 3571 aa9.24□□□□□ -0.93
SMARCC1-201ENST00000254480 CSMD2Q7Z408 3487 aa9.17□□□□□ -0.94
SMARCC1-201ENST00000254480 MUC3AQ02505 3323 aa9.15□□□□□ -0.94
SMARCC1-201ENST00000254480 SPENQ96T58 3664 aaKnown RBP9.01□□□□□ -0.97
SMARCC1-201ENST00000254480 KRTAP3-1Q9BYR8 98 aa9□□□□□ -0.97
SMARCC1-201ENST00000254480 OTOGQ6ZRI0 2925 aa8.98□□□□□ -0.97
SMARCC1-201ENST00000254480 KRTAP12-1P59990 96 aa8.98□□□□□ -0.97
SMARCC1-201ENST00000254480 FBN3Q75N90 2809 aa8.98□□□□□ -0.97
SMARCC1-201ENST00000254480 KRTAP13-4Q3LI77 160 aa8.92□□□□□ -0.98
SMARCC1-201ENST00000254480 COL7A1Q02388 2944 aa8.87□□□□□ -0.99
SMARCC1-201ENST00000254480 ANK3Q12955 4377 aaKnown RBP8.87□□□□□ -0.99
SMARCC1-201ENST00000254480 MEGF8Q7Z7M0 2845 aa8.87□□□□□ -0.99
SMARCC1-201ENST00000254480 TRRAPQ9Y4A5 3859 aa8.85□□□□□ -0.99
SMARCC1-201ENST00000254480 KRTAP15-1Q3LI76 137 aa8.74□□□□□ -1.01
SMARCC1-201ENST00000254480 KRTAP10-6P60371 365 aaPredicted RBP8.68□□□□□ -1.02
SMARCC1-201ENST00000254480 KRTAP4-5Q9BYR2 181 aa8.6□□□□□ -1.03
SMARCC1-201ENST00000254480 MT1HL1P0DM35 61 aa8.59□□□□□ -1.03
SMARCC1-201ENST00000254480 CRCT1Q9UGL9 99 aa8.58□□□□□ -1.04
SMARCC1-201ENST00000254480 BSNQ9UPA5 3926 aa8.47□□□□□ -1.05
SMARCC1-201ENST00000254480 VPS13CQ709C8 3753 aa8.47□□□□□ -1.05
SMARCC1-201ENST00000254480 HUWE1Q7Z6Z7 4374 aaKnown RBP8.44□□□□□ -1.06
SMARCC1-201ENST00000254480 CSMD3Q7Z407 3707 aa8.43□□□□□ -1.06
SMARCC1-201ENST00000254480 KRTAP3-3Q9BYR6 98 aa8.38□□□□□ -1.07
SMARCC1-201ENST00000254480 KRTAP3-2Q9BYR7 98 aa8.35□□□□□ -1.07
SMARCC1-201ENST00000254480 KRTAP10-12P60413 245 aa8.32□□□□□ -1.08
SMARCC1-201ENST00000254480 KRTAP10-4P60372 401 aaPredicted RBP8.26□□□□□ -1.09
SMARCC1-201ENST00000254480 LORP23490 312 aaPredicted RBP8.14□□□□□ -1.11
SMARCC1-201ENST00000254480 LCE3AQ5TA76 89 aa8.07□□□□□ -1.12
SMARCC1-201ENST00000254480 KRTAP12-3P60328 96 aa8.07□□□□□ -1.12
SMARCC1-201ENST00000254480 ZNF469Q96JG9 3925 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms