RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ANK3Q12955 4377 aaKnown RBP7.44□□□□□ -1.22
LDLR-201ENST00000252444 XP32Q5T750 250 aa7.44□□□□□ -1.22
LDLR-201ENST00000252444 KTN1-AS1Q86SY8 53 aa7.43□□□□□ -1.22
LDLR-201ENST00000252444 LINC01554Q52M75 96 aa7.42□□□□□ -1.22
LDLR-201ENST00000252444 NBEAL2Q6ZNJ1 2754 aa7.42□□□□□ -1.22
LDLR-201ENST00000252444 A0A0D9SG42 100 aa7.41□□□□□ -1.22
LDLR-201ENST00000252444 Q5VV11 94 aa7.39□□□□□ -1.23
LDLR-201ENST00000252444 ZZEF1O43149 2961 aa7.39□□□□□ -1.23
LDLR-201ENST00000252444 KRTAP13-3Q3SY46 172 aa7.38□□□□□ -1.23
LDLR-201ENST00000252444 CYSTM1Q9H1C7 97 aa7.37□□□□□ -1.23
LDLR-201ENST00000252444 KRTAP16-1A8MUX0 517 aa7.36□□□□□ -1.23
LDLR-201ENST00000252444 PLAC4Q8WY50 150 aa7.36□□□□□ -1.23
LDLR-201ENST00000252444 ADM2Q7Z4H4 148 aa7.35□□□□□ -1.23
LDLR-201ENST00000252444 VCANP13611 3396 aa7.35□□□□□ -1.23
LDLR-201ENST00000252444 LCA10Q71F78 164 aa7.35□□□□□ -1.23
LDLR-201ENST00000252444 BOD1L1Q8NFC6 3051 aa7.34□□□□□ -1.23
LDLR-201ENST00000252444 ZANQ9Y493 2812 aa7.33□□□□□ -1.24
LDLR-201ENST00000252444 MXRA5Q9NR99 2828 aa7.31□□□□□ -1.24
LDLR-201ENST00000252444 FREM2Q5SZK8 3169 aa7.3□□□□□ -1.24
LDLR-201ENST00000252444 CELSR2Q9HCU4 2923 aa7.3□□□□□ -1.24
LDLR-201ENST00000252444 OTOGQ6ZRI0 2925 aa7.3□□□□□ -1.24
LDLR-201ENST00000252444 SPATA8Q6RVD6 105 aa7.28□□□□□ -1.24
LDLR-201ENST00000252444 STAB2Q8WWQ8 2551 aa7.28□□□□□ -1.24
LDLR-201ENST00000252444 ALMS1Q8TCU4 4167 aa7.25□□□□□ -1.25
LDLR-201ENST00000252444 DNAH14Q0VDD8 3507 aa7.24□□□□□ -1.25
LDLR-201ENST00000252444 ROMO1P60602 79 aa7.22□□□□□ -1.25
LDLR-201ENST00000252444 FLG2Q5D862 2391 aaPredicted RBP7.2□□□□□ -1.26
LDLR-201ENST00000252444 TACC2O95359 2948 aa7.18□□□□□ -1.26
LDLR-201ENST00000252444 CELSR3Q9NYQ7 3312 aa7.09□□□□□ -1.27
LDLR-201ENST00000252444 NF1P21359 2839 aa7.08□□□□□ -1.28
LDLR-201ENST00000252444 LOC400499M0QZD8 3231 aa7.07□□□□□ -1.28
LDLR-201ENST00000252444 DCHS2Q6V1P9 2916 aa7.05□□□□□ -1.28
LDLR-201ENST00000252444 DMBT1Q9UGM3 2413 aaPredicted RBP7.02□□□□□ -1.29
LDLR-201ENST00000252444 CRYBG3Q68DQ2 2970 aa7.02□□□□□ -1.29
LDLR-201ENST00000252444 LUZP6Q538Z0 58 aa7.01□□□□□ -1.29
LDLR-201ENST00000252444 H0YAA0 97 aa6.99□□□□□ -1.29
LDLR-201ENST00000252444 TENM3Q9P273 2699 aa6.99□□□□□ -1.29
LDLR-201ENST00000252444 KRTAP10-4P60372 401 aaPredicted RBP6.97□□□□□ -1.29
LDLR-201ENST00000252444 MYO15AQ9UKN7 3530 aa6.95□□□□□ -1.3
LDLR-201ENST00000252444 HUWE1Q7Z6Z7 4374 aaKnown RBP6.94□□□□□ -1.3
LDLR-201ENST00000252444 BSNQ9UPA5 3926 aa6.92□□□□□ -1.3
LDLR-201ENST00000252444 MT1HL1P0DM35 61 aa6.91□□□□□ -1.3
LDLR-201ENST00000252444 TENM1Q9UKZ4 2725 aa6.91□□□□□ -1.3
LDLR-201ENST00000252444 PP632Q6XCG6 107 aa6.91□□□□□ -1.3
LDLR-201ENST00000252444 TENM2Q9NT68 2774 aa6.9□□□□□ -1.31
LDLR-201ENST00000252444 TNP1P09430 55 aa6.9□□□□□ -1.31
LDLR-201ENST00000252444 CELSR1Q9NYQ6 3014 aa6.87□□□□□ -1.31
LDLR-201ENST00000252444 FBN1P35555 2871 aaKnown RBP6.87□□□□□ -1.31
LDLR-201ENST00000252444 PRO2289Q9P1D8 64 aa6.87□□□□□ -1.31
LDLR-201ENST00000252444 DCHS1Q96JQ0 3298 aa6.85□□□□□ -1.31
LDLR-201ENST00000252444 A6NN06 94 aa6.84□□□□□ -1.32
LDLR-201ENST00000252444 VWFP04275 2813 aa6.82□□□□□ -1.32
LDLR-201ENST00000252444 PRAC1Q96KF2 57 aa6.8□□□□□ -1.32
LDLR-201ENST00000252444 KRTAP25-1Q3LHN0 102 aa6.79□□□□□ -1.32
LDLR-201ENST00000252444 NBPF19A0A087WUL8 3843 aa6.79□□□□□ -1.32
LDLR-201ENST00000252444 A8MU10 97 aa6.77□□□□□ -1.33
LDLR-201ENST00000252444 KRTAP10-10P60014 251 aa6.77□□□□□ -1.33
LDLR-201ENST00000252444 CFAP47Q6ZTR5 3102 aa6.75□□□□□ -1.33
LDLR-201ENST00000252444 H3BS24 57 aa6.75□□□□□ -1.33
LDLR-201ENST00000252444 SPEGQ15772 3267 aa6.73□□□□□ -1.33
LDLR-201ENST00000252444 DNAH9Q9NYC9 4486 aa6.72□□□□□ -1.33
LDLR-201ENST00000252444 RELNP78509 3460 aa6.71□□□□□ -1.34
LDLR-201ENST00000252444 ZFHX4Q86UP3 3567 aa6.7□□□□□ -1.34
LDLR-201ENST00000252444 AKAP9Q99996 3911 aa6.69□□□□□ -1.34
LDLR-201ENST00000252444 DMDP11532 3685 aa6.66□□□□□ -1.34
LDLR-201ENST00000252444 WDFY3Q8IZQ1 3526 aa6.66□□□□□ -1.34
LDLR-201ENST00000252444 FBN3Q75N90 2809 aa6.65□□□□□ -1.34
LDLR-201ENST00000252444 DNAH1Q9P2D7 4330 aa6.65□□□□□ -1.34
LDLR-201ENST00000252444 DNAH10Q8IVF4 4471 aa6.64□□□□□ -1.35
LDLR-201ENST00000252444 DNAH6Q9C0G6 4158 aa6.63□□□□□ -1.35
LDLR-201ENST00000252444 PKD1L1Q8TDX9 2849 aa6.61□□□□□ -1.35
LDLR-201ENST00000252444 P0C880 135 aa6.57□□□□□ -1.36
LDLR-201ENST00000252444 KRTAP3-1Q9BYR8 98 aa6.57□□□□□ -1.36
LDLR-201ENST00000252444 A0A0A0MQY5 61 aa6.55□□□□□ -1.36
LDLR-201ENST00000252444 LAMA5O15230 3695 aa6.55□□□□□ -1.36
LDLR-201ENST00000252444 ASPMQ8IZT6 3477 aa6.54□□□□□ -1.36
LDLR-201ENST00000252444 MUC3AQ02505 3323 aa6.53□□□□□ -1.36
LDLR-201ENST00000252444 TGP01266 2768 aa6.53□□□□□ -1.36
LDLR-201ENST00000252444 DNAH11Q96DT5 4516 aa6.52□□□□□ -1.37
LDLR-201ENST00000252444 VPS13DQ5THJ4 4388 aa6.52□□□□□ -1.37
LDLR-201ENST00000252444 ANK2Q01484 3957 aa6.5□□□□□ -1.37
LDLR-201ENST00000252444 SPENQ96T58 3664 aaKnown RBP6.48□□□□□ -1.37
LDLR-201ENST00000252444 DNAH2Q9P225 4427 aa6.48□□□□□ -1.37
LDLR-201ENST00000252444 KRTAP4-5Q9BYR2 181 aa6.46□□□□□ -1.38
LDLR-201ENST00000252444 DNAH17Q9UFH2 4485 aa6.43□□□□□ -1.38
LDLR-201ENST00000252444 DNAH3Q8TD57 4116 aa6.42□□□□□ -1.38
LDLR-201ENST00000252444 MEGF8Q7Z7M0 2845 aa6.41□□□□□ -1.38
LDLR-201ENST00000252444 KRTAP13-4Q3LI77 160 aa6.41□□□□□ -1.38
LDLR-201ENST00000252444 TRRAPQ9Y4A5 3859 aa6.39□□□□□ -1.39
LDLR-201ENST00000252444 PLECQ15149 4684 aaKnown RBP6.38□□□□□ -1.39
LDLR-201ENST00000252444 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
LDLR-201ENST00000252444 SVEP1Q4LDE5 3571 aa6.35□□□□□ -1.39
LDLR-201ENST00000252444 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
LDLR-201ENST00000252444 KRTAP10-6P60371 365 aaPredicted RBP6.33□□□□□ -1.4
LDLR-201ENST00000252444 CUBNO60494 3623 aa6.32□□□□□ -1.4
LDLR-201ENST00000252444 SMG1Q96Q15 3661 aaKnown RBP6.32□□□□□ -1.4
LDLR-201ENST00000252444 DYNC1H1Q14204 4646 aaKnown RBP6.3□□□□□ -1.4
LDLR-201ENST00000252444 CSMD1Q96PZ7 3565 aa6.27□□□□□ -1.41
LDLR-201ENST00000252444 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
LDLR-201ENST00000252444 KRTAP3-3Q9BYR6 98 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms