RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KRTAP16-1A8MUX0 517 aa7.46□□□□□ -1.22
SF3A1-201ENST00000215793 KRTAP21-3Q3LHN1 58 aa7.43□□□□□ -1.22
SF3A1-201ENST00000215793 UNC80Q8N2C7 3258 aa7.43□□□□□ -1.22
SF3A1-201ENST00000215793 CELSR2Q9HCU4 2923 aa7.41□□□□□ -1.22
SF3A1-201ENST00000215793 TNP1P09430 55 aa7.4□□□□□ -1.22
SF3A1-201ENST00000215793 FRYLO94915 3013 aa7.38□□□□□ -1.23
SF3A1-201ENST00000215793 LRBAP50851 2863 aa7.37□□□□□ -1.23
SF3A1-201ENST00000215793 LAMA1P25391 3075 aa7.36□□□□□ -1.23
SF3A1-201ENST00000215793 NBEAQ8NFP9 2946 aa7.36□□□□□ -1.23
SF3A1-201ENST00000215793 TENM3Q9P273 2699 aa7.35□□□□□ -1.23
SF3A1-201ENST00000215793 ADGRG4Q8IZF6 3080 aa7.35□□□□□ -1.23
SF3A1-201ENST00000215793 USP34Q70CQ2 3546 aa7.34□□□□□ -1.23
SF3A1-201ENST00000215793 NDUFAF8A1L188 74 aa7.32□□□□□ -1.24
SF3A1-201ENST00000215793 DCHS2Q6V1P9 2916 aa7.31□□□□□ -1.24
SF3A1-201ENST00000215793 ZZEF1O43149 2961 aa7.3□□□□□ -1.24
SF3A1-201ENST00000215793 CRYBG3Q68DQ2 2970 aa7.29□□□□□ -1.24
SF3A1-201ENST00000215793 KRTAP1-4P0C5Y4 121 aa7.28□□□□□ -1.24
SF3A1-201ENST00000215793 BOD1L1Q8NFC6 3051 aa7.27□□□□□ -1.25
SF3A1-201ENST00000215793 CELSR3Q9NYQ7 3312 aa7.27□□□□□ -1.25
SF3A1-201ENST00000215793 PP632Q6XCG6 107 aa7.25□□□□□ -1.25
SF3A1-201ENST00000215793 XP32Q5T750 250 aa7.24□□□□□ -1.25
SF3A1-201ENST00000215793 DNAH14Q0VDD8 3507 aa7.22□□□□□ -1.25
SF3A1-201ENST00000215793 ZANQ9Y493 2812 aa7.21□□□□□ -1.26
SF3A1-201ENST00000215793 C10orf95Q9H7T3 257 aa7.2□□□□□ -1.26
SF3A1-201ENST00000215793 TENM1Q9UKZ4 2725 aa7.17□□□□□ -1.26
SF3A1-201ENST00000215793 CDH23Q9H251 3354 aa7.16□□□□□ -1.26
SF3A1-201ENST00000215793 NF1P21359 2839 aa7.15□□□□□ -1.26
SF3A1-201ENST00000215793 TPRXLQ17RH7 258 aa7.13□□□□□ -1.27
SF3A1-201ENST00000215793 KRTAP10-8P60410 259 aa7.13□□□□□ -1.27
SF3A1-201ENST00000215793 H0YAA0 97 aa7.1□□□□□ -1.27
SF3A1-201ENST00000215793 VCANP13611 3396 aa7.1□□□□□ -1.27
SF3A1-201ENST00000215793 EYSQ5T1H1 3165 aa7.07□□□□□ -1.28
SF3A1-201ENST00000215793 CFAP47Q6ZTR5 3102 aa7.04□□□□□ -1.28
SF3A1-201ENST00000215793 P0C880 135 aa7.03□□□□□ -1.28
SF3A1-201ENST00000215793 COL6A3P12111 3177 aa7.03□□□□□ -1.28
SF3A1-201ENST00000215793 A0A1B0GVY2 172 aa7.03□□□□□ -1.28
SF3A1-201ENST00000215793 SZT2Q5T011 3432 aa7.01□□□□□ -1.29
SF3A1-201ENST00000215793 TENM2Q9NT68 2774 aa7□□□□□ -1.29
SF3A1-201ENST00000215793 KRTAP13-3Q3SY46 172 aa7□□□□□ -1.29
SF3A1-201ENST00000215793 FBN2P35556 2912 aa6.99□□□□□ -1.29
SF3A1-201ENST00000215793 TGP01266 2768 aa6.96□□□□□ -1.29
SF3A1-201ENST00000215793 MYO15AQ9UKN7 3530 aa6.96□□□□□ -1.3
SF3A1-201ENST00000215793 KRTAP10-10P60014 251 aa6.95□□□□□ -1.3
SF3A1-201ENST00000215793 SPEGQ15772 3267 aa6.95□□□□□ -1.3
SF3A1-201ENST00000215793 TNRC18O15417 2968 aaPredicted RBP6.94□□□□□ -1.3
SF3A1-201ENST00000215793 PRO2289Q9P1D8 64 aa6.93□□□□□ -1.3
SF3A1-201ENST00000215793 HRNRQ86YZ3 2850 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-201ENST00000215793 SPTBN5Q9NRC6 3674 aaKnown RBP6.92□□□□□ -1.3
SF3A1-201ENST00000215793 PKD1L1Q8TDX9 2849 aa6.89□□□□□ -1.31
SF3A1-201ENST00000215793 MXRA5Q9NR99 2828 aa6.86□□□□□ -1.31
SF3A1-201ENST00000215793 PDZD2O15018 2839 aa6.86□□□□□ -1.31
SF3A1-201ENST00000215793 WDFY3Q8IZQ1 3526 aa6.85□□□□□ -1.31
SF3A1-201ENST00000215793 CELSR1Q9NYQ6 3014 aa6.85□□□□□ -1.31
SF3A1-201ENST00000215793 DMXL1Q9Y485 3027 aa6.77□□□□□ -1.33
SF3A1-201ENST00000215793 VWFP04275 2813 aa6.75□□□□□ -1.33
SF3A1-201ENST00000215793 KRTAP12-2P59991 146 aa6.65□□□□□ -1.34
SF3A1-201ENST00000215793 KRTAP13-4Q3LI77 160 aa6.62□□□□□ -1.35
SF3A1-201ENST00000215793 SRRM2Q9UQ35 2752 aaKnown RBP6.61□□□□□ -1.35
SF3A1-201ENST00000215793 LOC400499M0QZD8 3231 aa6.61□□□□□ -1.35
SF3A1-201ENST00000215793 DMDP11532 3685 aa6.59□□□□□ -1.35
SF3A1-201ENST00000215793 KRTAP12-1P59990 96 aa6.58□□□□□ -1.36
SF3A1-201ENST00000215793 KRTAP3-1Q9BYR8 98 aa6.52□□□□□ -1.37
SF3A1-201ENST00000215793 DCHS1Q96JQ0 3298 aa6.5□□□□□ -1.37
SF3A1-201ENST00000215793 FBN1P35555 2871 aaKnown RBP6.47□□□□□ -1.37
SF3A1-201ENST00000215793 SPENQ96T58 3664 aaKnown RBP6.44□□□□□ -1.38
SF3A1-201ENST00000215793 ZFHX4Q86UP3 3567 aa6.4□□□□□ -1.39
SF3A1-201ENST00000215793 FBN3Q75N90 2809 aa6.37□□□□□ -1.39
SF3A1-201ENST00000215793 KRTAP10-6P60371 365 aaPredicted RBP6.37□□□□□ -1.39
SF3A1-201ENST00000215793 SMG1Q96Q15 3661 aaKnown RBP6.36□□□□□ -1.39
SF3A1-201ENST00000215793 ASPMQ8IZT6 3477 aa6.36□□□□□ -1.39
SF3A1-201ENST00000215793 MUC3AQ02505 3323 aa6.35□□□□□ -1.39
SF3A1-201ENST00000215793 KRTAP15-1Q3LI76 137 aa6.32□□□□□ -1.4
SF3A1-201ENST00000215793 RELNP78509 3460 aa6.31□□□□□ -1.4
SF3A1-201ENST00000215793 MEGF8Q7Z7M0 2845 aa6.31□□□□□ -1.4
SF3A1-201ENST00000215793 OTOGQ6ZRI0 2925 aa6.29□□□□□ -1.4
SF3A1-201ENST00000215793 COL7A1Q02388 2944 aa6.27□□□□□ -1.41
SF3A1-201ENST00000215793 MT1HL1P0DM35 61 aa6.19□□□□□ -1.42
SF3A1-201ENST00000215793 CSMD1Q96PZ7 3565 aa6.19□□□□□ -1.42
SF3A1-201ENST00000215793 LAMA5O15230 3695 aa6.19□□□□□ -1.42
SF3A1-201ENST00000215793 KRTAP3-2Q9BYR7 98 aa6.12□□□□□ -1.43
SF3A1-201ENST00000215793 BSNQ9UPA5 3926 aa6.11□□□□□ -1.43
SF3A1-201ENST00000215793 ZFHX3Q15911 3703 aa6.11□□□□□ -1.43
SF3A1-201ENST00000215793 KRTAP3-3Q9BYR6 98 aa6.1□□□□□ -1.43
SF3A1-201ENST00000215793 NBPF19A0A087WUL8 3843 aa6.08□□□□□ -1.44
SF3A1-201ENST00000215793 SVEP1Q4LDE5 3571 aa6.07□□□□□ -1.44
SF3A1-201ENST00000215793 KRTAP10-12P60413 245 aa6.05□□□□□ -1.44
SF3A1-201ENST00000215793 INE1O15225 51 aa6.04□□□□□ -1.44
SF3A1-201ENST00000215793 CUBNO60494 3623 aa6.02□□□□□ -1.45
SF3A1-201ENST00000215793 KRTAP10-4P60372 401 aaPredicted RBP6□□□□□ -1.45
SF3A1-201ENST00000215793 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
SF3A1-201ENST00000215793 KRTAP12-3P60328 96 aa5.9□□□□□ -1.46
SF3A1-201ENST00000215793 ANK3Q12955 4377 aaKnown RBP5.9□□□□□ -1.46
SF3A1-201ENST00000215793 VPS13CQ709C8 3753 aa5.88□□□□□ -1.47
SF3A1-201ENST00000215793 KRTAP4-5Q9BYR2 181 aa5.86□□□□□ -1.47
SF3A1-201ENST00000215793 CRCT1Q9UGL9 99 aa5.85□□□□□ -1.47
SF3A1-201ENST00000215793 TRRAPQ9Y4A5 3859 aa5.82□□□□□ -1.48
SF3A1-201ENST00000215793 LCE3AQ5TA76 89 aa5.77□□□□□ -1.49
SF3A1-201ENST00000215793 CSMD2Q7Z408 3487 aa5.75□□□□□ -1.49
SF3A1-201ENST00000215793 LORP23490 312 aaPredicted RBP5.7□□□□□ -1.5
SF3A1-201ENST00000215793 AKAP9Q99996 3911 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms