RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 FREM2Q5SZK8 3169 aa5.91□□□□□ -1.46
NIPAL3-201ENST00000003912 Q5VV11 94 aa5.89□□□□□ -1.47
NIPAL3-201ENST00000003912 USP34Q70CQ2 3546 aa5.88□□□□□ -1.47
NIPAL3-201ENST00000003912 NOTCH2NLQ7Z3S9 236 aa5.86□□□□□ -1.47
NIPAL3-201ENST00000003912 ZANQ9Y493 2812 aa5.85□□□□□ -1.47
NIPAL3-201ENST00000003912 PRAC1Q96KF2 57 aa5.85□□□□□ -1.47
NIPAL3-201ENST00000003912 M0QZ58 72 aa5.85□□□□□ -1.47
NIPAL3-201ENST00000003912 RPL37P61927 97 aaKnown RBP5.84□□□□□ -1.47
NIPAL3-201ENST00000003912 H1FX-AS1Q4G0G2 97 aa5.84□□□□□ -1.47
NIPAL3-201ENST00000003912 FLG2Q5D862 2391 aaPredicted RBP5.83□□□□□ -1.48
NIPAL3-201ENST00000003912 CELSR2Q9HCU4 2923 aa5.83□□□□□ -1.48
NIPAL3-201ENST00000003912 HRNRQ86YZ3 2850 aaPredicted RBP5.81□□□□□ -1.48
NIPAL3-201ENST00000003912 ADM2Q7Z4H4 148 aa5.8□□□□□ -1.48
NIPAL3-201ENST00000003912 PLAC4Q8WY50 150 aa5.8□□□□□ -1.48
NIPAL3-201ENST00000003912 DCHS2Q6V1P9 2916 aa5.8□□□□□ -1.48
NIPAL3-201ENST00000003912 CFAP47Q6ZTR5 3102 aa5.76□□□□□ -1.49
NIPAL3-201ENST00000003912 ASH1LQ9NR48 2969 aaKnown RBP5.76□□□□□ -1.49
NIPAL3-201ENST00000003912 NF1P21359 2839 aa5.73□□□□□ -1.49
NIPAL3-201ENST00000003912 KRTAP1-4P0C5Y4 121 aa5.72□□□□□ -1.49
NIPAL3-201ENST00000003912 LUZP6Q538Z0 58 aa5.72□□□□□ -1.49
NIPAL3-201ENST00000003912 C20orf166-AS1Q96NR2 134 aa5.72□□□□□ -1.49
NIPAL3-201ENST00000003912 A8MUU9 505 aa5.71□□□□□ -1.5
NIPAL3-201ENST00000003912 SPEGQ15772 3267 aa5.68□□□□□ -1.5
NIPAL3-201ENST00000003912 LOC400499M0QZD8 3231 aa5.68□□□□□ -1.5
NIPAL3-201ENST00000003912 MXRA5Q9NR99 2828 aa5.67□□□□□ -1.5
NIPAL3-201ENST00000003912 SPATA8Q6RVD6 105 aa5.65□□□□□ -1.51
NIPAL3-201ENST00000003912 ROMO1P60602 79 aa5.64□□□□□ -1.51
NIPAL3-201ENST00000003912 FBN2P35556 2912 aa5.64□□□□□ -1.51
NIPAL3-201ENST00000003912 A6NN06 94 aa5.64□□□□□ -1.51
NIPAL3-201ENST00000003912 XP32Q5T750 250 aa5.64□□□□□ -1.51
NIPAL3-201ENST00000003912 A0A1B0GVY2 172 aa5.63□□□□□ -1.51
NIPAL3-201ENST00000003912 TPRXLQ17RH7 258 aa5.63□□□□□ -1.51
NIPAL3-201ENST00000003912 TENM2Q9NT68 2774 aa5.62□□□□□ -1.51
NIPAL3-201ENST00000003912 PDZD2O15018 2839 aa5.59□□□□□ -1.51
NIPAL3-201ENST00000003912 TENM1Q9UKZ4 2725 aa5.59□□□□□ -1.51
NIPAL3-201ENST00000003912 TENM3Q9P273 2699 aa5.57□□□□□ -1.52
NIPAL3-201ENST00000003912 A0A0A0MQY5 61 aa5.54□□□□□ -1.52
NIPAL3-201ENST00000003912 MYO15AQ9UKN7 3530 aa5.54□□□□□ -1.52
NIPAL3-201ENST00000003912 CELSR1Q9NYQ6 3014 aa5.52□□□□□ -1.53
NIPAL3-201ENST00000003912 KRTAP13-3Q3SY46 172 aa5.5□□□□□ -1.53
NIPAL3-201ENST00000003912 KRTAP10-8P60410 259 aa5.49□□□□□ -1.53
NIPAL3-201ENST00000003912 A8MU10 97 aa5.48□□□□□ -1.53
NIPAL3-201ENST00000003912 RELNP78509 3460 aa5.48□□□□□ -1.53
NIPAL3-201ENST00000003912 OTOGQ6ZRI0 2925 aa5.47□□□□□ -1.53
NIPAL3-201ENST00000003912 DCHS1Q96JQ0 3298 aa5.47□□□□□ -1.53
NIPAL3-201ENST00000003912 KRTAP16-1A8MUX0 517 aa5.45□□□□□ -1.54
NIPAL3-201ENST00000003912 KRTAP25-1Q3LHN0 102 aa5.45□□□□□ -1.54
NIPAL3-201ENST00000003912 PKD1L1Q8TDX9 2849 aa5.42□□□□□ -1.54
NIPAL3-201ENST00000003912 TNP1P09430 55 aa5.4□□□□□ -1.55
NIPAL3-201ENST00000003912 NBPF19A0A087WUL8 3843 aa5.38□□□□□ -1.55
NIPAL3-201ENST00000003912 KRTAP10-10P60014 251 aa5.37□□□□□ -1.55
NIPAL3-201ENST00000003912 WDFY3Q8IZQ1 3526 aa5.36□□□□□ -1.55
NIPAL3-201ENST00000003912 LAMA5O15230 3695 aa5.33□□□□□ -1.56
NIPAL3-201ENST00000003912 TGP01266 2768 aa5.33□□□□□ -1.56
NIPAL3-201ENST00000003912 NDUFAF8A1L188 74 aa5.3□□□□□ -1.56
NIPAL3-201ENST00000003912 VWFP04275 2813 aa5.3□□□□□ -1.56
NIPAL3-201ENST00000003912 ASPMQ8IZT6 3477 aa5.29□□□□□ -1.56
NIPAL3-201ENST00000003912 ANK3Q12955 4377 aaKnown RBP5.29□□□□□ -1.56
NIPAL3-201ENST00000003912 FBN1P35555 2871 aaKnown RBP5.28□□□□□ -1.56
NIPAL3-201ENST00000003912 PRO2289Q9P1D8 64 aa5.26□□□□□ -1.57
NIPAL3-201ENST00000003912 ZFHX3Q15911 3703 aa5.25□□□□□ -1.57
NIPAL3-201ENST00000003912 MUC3AQ02505 3323 aa5.25□□□□□ -1.57
NIPAL3-201ENST00000003912 DMDP11532 3685 aa5.23□□□□□ -1.57
NIPAL3-201ENST00000003912 PP632Q6XCG6 107 aa5.2□□□□□ -1.58
NIPAL3-201ENST00000003912 ZFHX4Q86UP3 3567 aa5.17□□□□□ -1.58
NIPAL3-201ENST00000003912 P0C880 135 aa5.16□□□□□ -1.58
NIPAL3-201ENST00000003912 H0YAA0 97 aa5.14□□□□□ -1.59
NIPAL3-201ENST00000003912 SMG1Q96Q15 3661 aaKnown RBP5.1□□□□□ -1.59
NIPAL3-201ENST00000003912 MT1HL1P0DM35 61 aa5.08□□□□□ -1.6
NIPAL3-201ENST00000003912 C10orf95Q9H7T3 257 aa5.07□□□□□ -1.6
NIPAL3-201ENST00000003912 SPENQ96T58 3664 aaKnown RBP5.06□□□□□ -1.6
NIPAL3-201ENST00000003912 FBN3Q75N90 2809 aa5.06□□□□□ -1.6
NIPAL3-201ENST00000003912 CSMD1Q96PZ7 3565 aa5.06□□□□□ -1.6
NIPAL3-201ENST00000003912 CSMD2Q7Z408 3487 aa5.04□□□□□ -1.6
NIPAL3-201ENST00000003912 SRRM2Q9UQ35 2752 aaKnown RBP5□□□□□ -1.61
NIPAL3-201ENST00000003912 TRRAPQ9Y4A5 3859 aa5□□□□□ -1.61
NIPAL3-201ENST00000003912 BSNQ9UPA5 3926 aa4.98□□□□□ -1.61
NIPAL3-201ENST00000003912 KRTAP10-4P60372 401 aaPredicted RBP4.97□□□□□ -1.61
NIPAL3-201ENST00000003912 KRTAP4-5Q9BYR2 181 aa4.97□□□□□ -1.61
NIPAL3-201ENST00000003912 MEGF8Q7Z7M0 2845 aa4.97□□□□□ -1.61
NIPAL3-201ENST00000003912 KRTAP3-1Q9BYR8 98 aa4.95□□□□□ -1.62
NIPAL3-201ENST00000003912 HUWE1Q7Z6Z7 4374 aaKnown RBP4.94□□□□□ -1.62
NIPAL3-201ENST00000003912 ALMS1Q8TCU4 4167 aa4.91□□□□□ -1.62
NIPAL3-201ENST00000003912 KRTAP12-2P59991 146 aa4.89□□□□□ -1.63
NIPAL3-201ENST00000003912 SVEP1Q4LDE5 3571 aa4.87□□□□□ -1.63
NIPAL3-201ENST00000003912 COL7A1Q02388 2944 aa4.86□□□□□ -1.63
NIPAL3-201ENST00000003912 KRTAP13-4Q3LI77 160 aa4.85□□□□□ -1.63
NIPAL3-201ENST00000003912 KRTAP12-1P59990 96 aa4.84□□□□□ -1.63
NIPAL3-201ENST00000003912 CUBNO60494 3623 aa4.77□□□□□ -1.65
NIPAL3-201ENST00000003912 KRTAP10-6P60371 365 aaPredicted RBP4.76□□□□□ -1.65
NIPAL3-201ENST00000003912 DNAH9Q9NYC9 4486 aa4.75□□□□□ -1.65
NIPAL3-201ENST00000003912 AKAP9Q99996 3911 aa4.69□□□□□ -1.66
NIPAL3-201ENST00000003912 KRTAP3-3Q9BYR6 98 aa4.66□□□□□ -1.66
NIPAL3-201ENST00000003912 VPS13CQ709C8 3753 aa4.66□□□□□ -1.66
NIPAL3-201ENST00000003912 DNAH5Q8TE73 4624 aa4.64□□□□□ -1.67
NIPAL3-201ENST00000003912 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
NIPAL3-201ENST00000003912 KRTAP3-2Q9BYR7 98 aa4.61□□□□□ -1.67
NIPAL3-201ENST00000003912 DNHD1Q96M86 4753 aa4.6□□□□□ -1.67
NIPAL3-201ENST00000003912 DNAH11Q96DT5 4516 aa4.6□□□□□ -1.67
NIPAL3-201ENST00000003912 DNAH1Q9P2D7 4330 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms