RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 HSPG2P98160 4391 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 APOBP04114 4563 aaKnown RBP3.7□□□□□ -1.82
VPS53-212ENST00000572259 IGHV3-64A0A075B6Q5 118 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 LINC01549A6NIU2 74 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 PANO1I0J062 215 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 APOC3P02656 99 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 ADCYAP1P18509 176 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 CNBPP62633 177 aaKnown RBP3.7□□□□□ -1.82
VPS53-212ENST00000572259 ASB16-AS1Q495Z4 193 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 Q6ZUT4 128 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 Q8N8P6 123 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 C9orf163Q8N9P6 203 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 RAB37Q96AX2 223 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 SERP1Q9Y6X1 66 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 HERC2O95714 4834 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 RYR1P21817 5038 aa3.7□□□□□ -1.82
VPS53-212ENST00000572259 IGLV4-69A0A075B6H9 119 aa3.69□□□□□ -1.82
VPS53-212ENST00000572259 TRBV10-2A0A0K0K1G8 114 aa3.69□□□□□ -1.82
VPS53-212ENST00000572259 RPL39P62891 51 aaKnown RBP3.69□□□□□ -1.82
VPS53-212ENST00000572259 LINC00526Q96FQ7 95 aa3.69□□□□□ -1.82
VPS53-212ENST00000572259 H7C2G1 150 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 SEC11AP67812 179 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 Q6ZSA8 131 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 TMEM141Q96I45 108 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 SMCO4Q9NRQ5 59 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 LINC00474Q9P2X8 69 aa3.68□□□□□ -1.82
VPS53-212ENST00000572259 DNAH8Q96JB1 4490 aa3.67□□□□□ -1.82
VPS53-212ENST00000572259 GVQW2A0A096LPI5 108 aaPredicted RBP3.67□□□□□ -1.82
VPS53-212ENST00000572259 SMR3BP02814 79 aaPredicted RBP3.67□□□□□ -1.82
VPS53-212ENST00000572259 CRYGAP11844 174 aa3.67□□□□□ -1.82
VPS53-212ENST00000572259 Q5VSD8 79 aa3.67□□□□□ -1.82
VPS53-212ENST00000572259 CIRBPQ14011 172 aaKnown RBP3.66□□□□□ -1.82
VPS53-212ENST00000572259 LCE1EQ5T753 118 aa3.66□□□□□ -1.82
VPS53-212ENST00000572259 C9orf153Q5TBE3 101 aa3.66□□□□□ -1.82
VPS53-212ENST00000572259 C5orf38Q86SI9 138 aa3.66□□□□□ -1.82
VPS53-212ENST00000572259 CLEC2BQ92478 149 aa3.66□□□□□ -1.82
VPS53-212ENST00000572259 FLG2Q5D862 2391 aaPredicted RBP3.65□□□□□ -1.83
VPS53-212ENST00000572259 A0A1B0GU33 70 aa3.65□□□□□ -1.83
VPS53-212ENST00000572259 TRACP01848 142 aa3.65□□□□□ -1.83
VPS53-212ENST00000572259 COX6A2Q02221 97 aa3.65□□□□□ -1.83
VPS53-212ENST00000572259 ATP11AUNQ6ZP68 121 aa3.65□□□□□ -1.83
VPS53-212ENST00000572259 RETNLBQ9BQ08 111 aa3.65□□□□□ -1.83
VPS53-212ENST00000572259 FAT1Q14517 4588 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 IGIPA6NJ69 53 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 C11orf86A6NJI1 115 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 NDUFA1O15239 70 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 HAMPP81172 84 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 SPAG11BQ08648 103 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 Q6ZQT0 140 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 AMELXQ99217 191 aa3.64□□□□□ -1.83
VPS53-212ENST00000572259 IGKV2-24A0A0C4DH68 120 aa3.63□□□□□ -1.83
VPS53-212ENST00000572259 LINC01546A6NGU7 62 aa3.63□□□□□ -1.83
VPS53-212ENST00000572259 ZNF22P17026 224 aaPredicted RBP3.63□□□□□ -1.83
VPS53-212ENST00000572259 UBE2D1P51668 147 aa3.63□□□□□ -1.83
VPS53-212ENST00000572259 SRRM2Q9UQ35 2752 aaKnown RBP3.63□□□□□ -1.83
VPS53-212ENST00000572259 VPS13BQ7Z7G8 4022 aa3.63□□□□□ -1.83
VPS53-212ENST00000572259 A6NN06 94 aa3.62□□□□□ -1.83
VPS53-212ENST00000572259 RPL37AP61513 92 aaKnown RBP3.62□□□□□ -1.83
VPS53-212ENST00000572259 PYY3Q5JQD4 70 aa3.62□□□□□ -1.83
VPS53-212ENST00000572259 SPACA4Q8TDM5 124 aa3.62□□□□□ -1.83
VPS53-212ENST00000572259 MRPL35Q9NZE8 188 aaKnown RBP3.62□□□□□ -1.83
VPS53-212ENST00000572259 TRBV30A0A0K0K1B3 111 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 hDV103S1A0JD37 113 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 H3BRM9 83 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 C18orf32Q8TCD1 76 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 PLAC8Q9NZF1 115 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 TOMM7Q9P0U1 55 aa3.61□□□□□ -1.83
VPS53-212ENST00000572259 DMBT1Q9UGM3 2413 aaPredicted RBP3.61□□□□□ -1.83
VPS53-212ENST00000572259 A0A096LNI7 61 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 KRTAP10-5P60370 271 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 ROMO1P60602 79 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 BAGE3Q86Y29 109 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 Q8IZM0 81 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 C14orf132Q9NPU4 83 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 CDKN2A-AS1Q9UH64 79 aa3.6□□□□□ -1.83
VPS53-212ENST00000572259 LCE3CQ5T5A8 94 aa3.59□□□□□ -1.83
VPS53-212ENST00000572259 UNQ6190/PRO20217Q6UXQ8 127 aa3.59□□□□□ -1.83
VPS53-212ENST00000572259 VAMP8Q9BV40 100 aa3.59□□□□□ -1.83
VPS53-212ENST00000572259 F8VRH5 84 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 BAALC-AS2P0C853 105 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 NPC2P61916 151 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 C9orf116Q5BN46 136 aaPredicted RBP3.58□□□□□ -1.84
VPS53-212ENST00000572259 SFTA2Q6UW10 78 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 COX7B2Q8TF08 81 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 C6orf48Q9UBA6 75 aa3.58□□□□□ -1.84
VPS53-212ENST00000572259 IGKV2D-26A0A0A0MRZ7 120 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 IGLC3P0DOY3 106 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 KRTAP25-1Q3LHN0 102 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 SPINT4Q6UDR6 99 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 C2orf82Q6UX34 121 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 IFI27L1Q96BM0 104 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 PRO1933Q9H354 126 aa3.57□□□□□ -1.84
VPS53-212ENST00000572259 ABCA13Q86UQ4 5058 aa3.56□□□□□ -1.84
VPS53-212ENST00000572259 TRAV12-1A0A0B4J245 112 aa3.56□□□□□ -1.84
VPS53-212ENST00000572259 PMCHL1Q16048 86 aa3.56□□□□□ -1.84
VPS53-212ENST00000572259 TMEM170BQ5T4T1 132 aa3.56□□□□□ -1.84
VPS53-212ENST00000572259 FP248Q71RG6 208 aaPredicted RBP3.56□□□□□ -1.84
VPS53-212ENST00000572259 PCLOQ9Y6V0 5065 aa3.55□□□□□ -1.84
VPS53-212ENST00000572259 A0A1W2PNN7 141 aa3.55□□□□□ -1.84
VPS53-212ENST00000572259 COLCA2A8K830 154 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms