RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 KRTAP2-4Q9BYR9 128 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 KRTAP2-1Q9BYU5 128 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 TMEM167BQ9NRX6 74 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 ZNF469Q96JG9 3925 aaPredicted RBP1.09□□□□□ -2.23
VRK1-203ENST00000555067 CDKN2A-AS1Q9UH64 79 aa1.09□□□□□ -2.23
VRK1-203ENST00000555067 APCP25054 2843 aa1.08□□□□□ -2.24
VRK1-203ENST00000555067 GCC2Q8IWJ2 1684 aa1.08□□□□□ -2.24
VRK1-203ENST00000555067 KLK9Q2XQG4 91 aa1.08□□□□□ -2.24
VRK1-203ENST00000555067 H1FX-AS1Q4G0G2 97 aa1.08□□□□□ -2.24
VRK1-203ENST00000555067 LINC00308Q8TCZ7 52 aa1.08□□□□□ -2.24
VRK1-203ENST00000555067 NOTCH1P46531 2555 aa1.07□□□□□ -2.24
VRK1-203ENST00000555067 PRO3102Q9H379 93 aa1.07□□□□□ -2.24
VRK1-203ENST00000555067 AKAP6Q13023 2319 aa1.07□□□□□ -2.24
VRK1-203ENST00000555067 LOC730098B7Z3J9 87 aa1.06□□□□□ -2.24
VRK1-203ENST00000555067 TFF3Q07654 80 aa1.06□□□□□ -2.24
VRK1-203ENST00000555067 MINOS1Q5TGZ0 78 aa1.06□□□□□ -2.24
VRK1-203ENST00000555067 COX6B2Q6YFQ2 88 aa1.06□□□□□ -2.24
VRK1-203ENST00000555067 PKDREJQ9NTG1 2253 aa1.05□□□□□ -2.24
VRK1-203ENST00000555067 DEFB109BQ30KR1 87 aa1.05□□□□□ -2.24
VRK1-203ENST00000555067 SMIM2Q9BVW6 85 aa1.05□□□□□ -2.24
VRK1-203ENST00000555067 CSMD3Q7Z407 3707 aa1.05□□□□□ -2.24
VRK1-203ENST00000555067 C6orf48Q9UBA6 75 aa1.04□□□□□ -2.24
VRK1-203ENST00000555067 TENM3Q9P273 2699 aa1.04□□□□□ -2.24
VRK1-203ENST00000555067 CLTCL1P53675 1640 aa1.04□□□□□ -2.24
VRK1-203ENST00000555067 NDUFA1O15239 70 aa1.03□□□□□ -2.24
VRK1-203ENST00000555067 LYNX1G3V0Z9 82 aa1.02□□□□□ -2.25
VRK1-203ENST00000555067 H0YAA0 97 aa1.01□□□□□ -2.25
VRK1-203ENST00000555067 IAPPP10997 89 aa1.01□□□□□ -2.25
VRK1-203ENST00000555067 SMR3AQ99954 134 aa1.01□□□□□ -2.25
VRK1-203ENST00000555067 WFDC10BQ8IUB3 73 aa0.99□□□□□ -2.25
VRK1-203ENST00000555067 WFDC13Q8IUB5 93 aa0.99□□□□□ -2.25
VRK1-203ENST00000555067 IGF2RP11717 2491 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 SPINK1P00995 79 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 DEFB130BP0DP73 79 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 DEFB130AP0DP74 79 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 RPS27P42677 84 aaKnown RBP0.96□□□□□ -2.26
VRK1-203ENST00000555067 RPS27LQ71UM5 84 aaKnown RBP0.96□□□□□ -2.26
VRK1-203ENST00000555067 KAAG1Q9UBP8 84 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 REV3LO60673 3130 aa0.96□□□□□ -2.26
VRK1-203ENST00000555067 CHD6Q8TD26 2715 aa0.95□□□□□ -2.26
VRK1-203ENST00000555067 ZFYVE26Q68DK2 2539 aa0.95□□□□□ -2.26
VRK1-203ENST00000555067 KNL1Q8NG31 2342 aa0.95□□□□□ -2.26
VRK1-203ENST00000555067 ARHGAP5-AS1Q96IT6 56 aa0.93□□□□□ -2.26
VRK1-203ENST00000555067 H3BUA1 57 aa0.92□□□□□ -2.26
VRK1-203ENST00000555067 PRLHP81277 87 aa0.92□□□□□ -2.26
VRK1-203ENST00000555067 WT1-ASQ06250 92 aa0.92□□□□□ -2.26
VRK1-203ENST00000555067 TTTY10Q9BZA0 68 aa0.92□□□□□ -2.26
VRK1-203ENST00000555067 VWFP04275 2813 aa0.92□□□□□ -2.26
VRK1-203ENST00000555067 NCOR1O75376 2440 aa0.91□□□□□ -2.26
VRK1-203ENST00000555067 SPTA1P02549 2419 aa0.91□□□□□ -2.26
VRK1-203ENST00000555067 RPL39P62891 51 aaKnown RBP0.91□□□□□ -2.26
VRK1-203ENST00000555067 DEFB106AQ8N104 65 aa0.91□□□□□ -2.26
VRK1-203ENST00000555067 ATRQ13535 2644 aa0.9□□□□□ -2.26
VRK1-203ENST00000555067 IGLV5-48A0A075B6I7 105 aa0.9□□□□□ -2.27
VRK1-203ENST00000555067 DEFB131AP59861 70 aa0.9□□□□□ -2.27
VRK1-203ENST00000555067 RPL39LQ96EH5 51 aaKnown RBP0.89□□□□□ -2.27
VRK1-203ENST00000555067 CSPG4Q6UVK1 2322 aa0.89□□□□□ -2.27
VRK1-203ENST00000555067 MUC5BQ9HC84 5762 aaPredicted RBP0.89□□□□□ -2.27
VRK1-203ENST00000555067 MMP24-AS1A0A0U1RRL7 71 aa0.88□□□□□ -2.27
VRK1-203ENST00000555067 POLR2KP53803 58 aaKnown RBP0.88□□□□□ -2.27
VRK1-203ENST00000555067 S4R3F8 94 aa0.88□□□□□ -2.27
VRK1-203ENST00000555067 TENM4Q6N022 2769 aa0.87□□□□□ -2.27
VRK1-203ENST00000555067 U3KQA8 63 aa0.87□□□□□ -2.27
VRK1-203ENST00000555067 BPTFQ12830 3046 aa0.87□□□□□ -2.27
VRK1-203ENST00000555067 H3BSH0 61 aa0.86□□□□□ -2.27
VRK1-203ENST00000555067 LEAP2Q969E1 77 aa0.86□□□□□ -2.27
VRK1-203ENST00000555067 WNK2Q9Y3S1 2297 aa0.86□□□□□ -2.27
VRK1-203ENST00000555067 UNC79Q9P2D8 2635 aa0.85□□□□□ -2.27
VRK1-203ENST00000555067 NOP10Q9NPE3 64 aaKnown RBP0.85□□□□□ -2.27
VRK1-203ENST00000555067 LINC01590Q5TEZ4 76 aa0.83□□□□□ -2.28
VRK1-203ENST00000555067 TOMM7Q9P0U1 55 aa0.83□□□□□ -2.28
VRK1-203ENST00000555067 NAV2Q8IVL1 2488 aa0.83□□□□□ -2.28
VRK1-203ENST00000555067 USP24Q9UPU5 2620 aa0.82□□□□□ -2.28
VRK1-203ENST00000555067 H0YGG7 62 aa0.82□□□□□ -2.28
VRK1-203ENST00000555067 OTOGQ6ZRI0 2925 aa0.82□□□□□ -2.28
VRK1-203ENST00000555067 PDE4DIPQ5VU43 2346 aa0.82□□□□□ -2.28
VRK1-203ENST00000555067 M0QY20 66 aa0.81□□□□□ -2.28
VRK1-203ENST00000555067 PRCDQ00LT1 54 aa0.81□□□□□ -2.28
VRK1-203ENST00000555067 ABCA2Q9BZC7 2435 aa0.81□□□□□ -2.28
VRK1-203ENST00000555067 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
VRK1-203ENST00000555067 A8MTW9 85 aa0.8□□□□□ -2.28
VRK1-203ENST00000555067 BSNQ9UPA5 3926 aa0.79□□□□□ -2.28
VRK1-203ENST00000555067 FAT2Q9NYQ8 4349 aa0.79□□□□□ -2.28
VRK1-203ENST00000555067 CLPSL2Q6UWE3 100 aa0.79□□□□□ -2.28
VRK1-203ENST00000555067 PTPN13Q12923 2485 aa0.78□□□□□ -2.28
VRK1-203ENST00000555067 ALMS1Q8TCU4 4167 aa0.78□□□□□ -2.28
VRK1-203ENST00000555067 TRANK1O15050 2925 aa0.78□□□□□ -2.28
VRK1-203ENST00000555067 DEFB135Q30KP9 77 aa0.78□□□□□ -2.28
VRK1-203ENST00000555067 CHD8Q9HCK8 2581 aa0.78□□□□□ -2.28
VRK1-203ENST00000555067 TNXBP22105 4242 aa0.78□□□□□ -2.29
VRK1-203ENST00000555067 SYNE1Q8NF91 8797 aaKnown RBP0.77□□□□□ -2.29
VRK1-203ENST00000555067 DEFB104AQ8WTQ1 72 aa0.77□□□□□ -2.29
VRK1-203ENST00000555067 LRP1Q07954 4544 aaKnown RBP0.75□□□□□ -2.29
VRK1-203ENST00000555067 M0R2T5 61 aa0.74□□□□□ -2.29
VRK1-203ENST00000555067 PRM1P04553 51 aa0.74□□□□□ -2.29
VRK1-203ENST00000555067 KRTAP21-1Q3LI58 79 aa0.74□□□□□ -2.29
VRK1-203ENST00000555067 UBR5O95071 2799 aaPredicted RBP0.74□□□□□ -2.29
VRK1-203ENST00000555067 HUWE1Q7Z6Z7 4374 aaKnown RBP0.73□□□□□ -2.29
VRK1-203ENST00000555067 EP300Q09472 2414 aaPredicted RBP0.73□□□□□ -2.29
VRK1-203ENST00000555067 NCOR2Q9Y618 2525 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms