RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 SZT2Q5T011 3432 aa6.52□□□□□ -1.37
PCDH9-204ENST00000544246 FLNAP21333 2647 aaKnown RBP6.51□□□□□ -1.37
PCDH9-204ENST00000544246 SETXQ7Z333 2677 aaKnown RBP6.51□□□□□ -1.37
PCDH9-204ENST00000544246 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.51□□□□□ -1.37
PCDH9-204ENST00000544246 KRTAP10-3P60369 221 aa6.51□□□□□ -1.37
PCDH9-204ENST00000544246 COL6A3P12111 3177 aa6.5□□□□□ -1.37
PCDH9-204ENST00000544246 Q8N9P0 234 aaPredicted RBP6.5□□□□□ -1.37
PCDH9-204ENST00000544246 ROMO1P60602 79 aa6.49□□□□□ -1.37
PCDH9-204ENST00000544246 FAM229BQ4G0N7 80 aa6.49□□□□□ -1.37
PCDH9-204ENST00000544246 MGAM2Q2M2H8 2515 aa6.49□□□□□ -1.37
PCDH9-204ENST00000544246 TEP1Q99973 2627 aaKnown RBP6.48□□□□□ -1.37
PCDH9-204ENST00000544246 CDH23Q9H251 3354 aa6.48□□□□□ -1.37
PCDH9-204ENST00000544246 MMP24-AS1A0A0U1RRL7 71 aa6.47□□□□□ -1.37
PCDH9-204ENST00000544246 H1FX-AS1Q4G0G2 97 aa6.47□□□□□ -1.37
PCDH9-204ENST00000544246 TNP2Q05952 138 aa6.45□□□□□ -1.38
PCDH9-204ENST00000544246 IGSF10Q6WRI0 2623 aa6.45□□□□□ -1.38
PCDH9-204ENST00000544246 Q5VV11 94 aa6.45□□□□□ -1.38
PCDH9-204ENST00000544246 Q5XG85 94 aa6.45□□□□□ -1.38
PCDH9-204ENST00000544246 RPL37P61927 97 aaKnown RBP6.44□□□□□ -1.38
PCDH9-204ENST00000544246 Q5W150 140 aa6.44□□□□□ -1.38
PCDH9-204ENST00000544246 CHD6Q8TD26 2715 aa6.44□□□□□ -1.38
PCDH9-204ENST00000544246 MAST4O15021 2626 aa6.44□□□□□ -1.38
PCDH9-204ENST00000544246 MGAQ8IWI9 3026 aa6.43□□□□□ -1.38
PCDH9-204ENST00000544246 CENPEQ02224 2701 aa6.43□□□□□ -1.38
PCDH9-204ENST00000544246 DSPP15924 2871 aaKnown RBP6.43□□□□□ -1.38
PCDH9-204ENST00000544246 LAMA2P24043 3122 aaKnown RBP6.43□□□□□ -1.38
PCDH9-204ENST00000544246 AKAP13Q12802 2813 aa6.43□□□□□ -1.38
PCDH9-204ENST00000544246 ATRQ13535 2644 aa6.42□□□□□ -1.38
PCDH9-204ENST00000544246 PLAC4Q8WY50 150 aa6.4□□□□□ -1.38
PCDH9-204ENST00000544246 GCN1Q92616 2671 aaKnown RBP6.4□□□□□ -1.38
PCDH9-204ENST00000544246 CFAP54Q96N23 3096 aa6.4□□□□□ -1.38
PCDH9-204ENST00000544246 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.39
PCDH9-204ENST00000544246 M0QZ58 72 aa6.39□□□□□ -1.39
PCDH9-204ENST00000544246 KRTAP21-3Q3LHN1 58 aa6.39□□□□□ -1.39
PCDH9-204ENST00000544246 UNC80Q8N2C7 3258 aa6.38□□□□□ -1.39
PCDH9-204ENST00000544246 BPTFQ12830 3046 aa6.38□□□□□ -1.39
PCDH9-204ENST00000544246 XIRP2A4UGR9 3374 aa6.38□□□□□ -1.39
PCDH9-204ENST00000544246 WDFY4Q6ZS81 3184 aa6.38□□□□□ -1.39
PCDH9-204ENST00000544246 CR1P17927 2039 aa6.38□□□□□ -1.39
PCDH9-204ENST00000544246 FP248Q71RG6 208 aaPredicted RBP6.38□□□□□ -1.39
PCDH9-204ENST00000544246 PLAC8Q9NZF1 115 aa6.36□□□□□ -1.39
PCDH9-204ENST00000544246 TRIOO75962 3097 aa6.35□□□□□ -1.39
PCDH9-204ENST00000544246 UNC79Q9P2D8 2635 aa6.34□□□□□ -1.39
PCDH9-204ENST00000544246 KRTAP16-1A8MUX0 517 aa6.34□□□□□ -1.39
PCDH9-204ENST00000544246 LINC00472Q9H8W2 130 aa6.3□□□□□ -1.4
PCDH9-204ENST00000544246 ASB16-AS1Q495Z4 193 aa6.3□□□□□ -1.4
PCDH9-204ENST00000544246 ADM2Q7Z4H4 148 aa6.3□□□□□ -1.4
PCDH9-204ENST00000544246 SPRR1AP35321 89 aa6.27□□□□□ -1.41
PCDH9-204ENST00000544246 CYSTM1Q9H1C7 97 aa6.27□□□□□ -1.41
PCDH9-204ENST00000544246 SPRR1BP22528 89 aa6.27□□□□□ -1.41
PCDH9-204ENST00000544246 COL6A5A8TX70 2615 aa6.26□□□□□ -1.41
PCDH9-204ENST00000544246 SPATA8Q6RVD6 105 aa6.25□□□□□ -1.41
PCDH9-204ENST00000544246 VCANP13611 3396 aa6.24□□□□□ -1.41
PCDH9-204ENST00000544246 C20orf166-AS1Q96NR2 134 aa6.24□□□□□ -1.41
PCDH9-204ENST00000544246 KRTAP26-1Q6PEX3 210 aa6.24□□□□□ -1.41
PCDH9-204ENST00000544246 Q5VSD8 79 aa6.23□□□□□ -1.41
PCDH9-204ENST00000544246 TEX15Q9BXT5 2789 aa6.23□□□□□ -1.41
PCDH9-204ENST00000544246 STAB1Q9NY15 2570 aa6.21□□□□□ -1.42
PCDH9-204ENST00000544246 Q6ZR54 194 aa6.19□□□□□ -1.42
PCDH9-204ENST00000544246 Q8NDZ9 215 aa6.19□□□□□ -1.42
PCDH9-204ENST00000544246 FRYLO94915 3013 aa6.18□□□□□ -1.42
PCDH9-204ENST00000544246 LCE6AA0A183 80 aa6.18□□□□□ -1.42
PCDH9-204ENST00000544246 KRTAP25-1Q3LHN0 102 aa6.15□□□□□ -1.42
PCDH9-204ENST00000544246 VPS13AQ96RL7 3174 aa6.15□□□□□ -1.43
PCDH9-204ENST00000544246 OXTP01178 125 aa6.15□□□□□ -1.43
PCDH9-204ENST00000544246 PANO1I0J062 215 aa6.14□□□□□ -1.43
PCDH9-204ENST00000544246 DMXL2Q8TDJ6 3036 aa6.13□□□□□ -1.43
PCDH9-204ENST00000544246 FRYQ5TBA9 3013 aa6.13□□□□□ -1.43
PCDH9-204ENST00000544246 EYSQ5T1H1 3165 aa6.13□□□□□ -1.43
PCDH9-204ENST00000544246 SPTBN5Q9NRC6 3674 aaKnown RBP6.1□□□□□ -1.43
PCDH9-204ENST00000544246 DMXL1Q9Y485 3027 aa6.09□□□□□ -1.43
PCDH9-204ENST00000544246 KRTAP10-1P60331 282 aa6.09□□□□□ -1.44
PCDH9-204ENST00000544246 ITPR2Q14571 2701 aa6.07□□□□□ -1.44
PCDH9-204ENST00000544246 LAMA1P25391 3075 aa6.06□□□□□ -1.44
PCDH9-204ENST00000544246 NDUFAF8A1L188 74 aa6.06□□□□□ -1.44
PCDH9-204ENST00000544246 FLNCQ14315 2725 aa6.05□□□□□ -1.44
PCDH9-204ENST00000544246 A8MUU9 505 aa6.05□□□□□ -1.44
PCDH9-204ENST00000544246 A8MU10 97 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 HIVEP1P15822 2718 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 A6NN06 94 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 COL12A1Q99715 3063 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 NBEAL1Q6ZS30 2694 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 KRTAP10-2P60368 255 aa6.03□□□□□ -1.44
PCDH9-204ENST00000544246 KRTAP29-1A8MX34 341 aaPredicted RBP6.02□□□□□ -1.45
PCDH9-204ENST00000544246 KRTAP1-5Q9BYS1 174 aa6.02□□□□□ -1.45
PCDH9-204ENST00000544246 REV3LO60673 3130 aa6.02□□□□□ -1.45
PCDH9-204ENST00000544246 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
PCDH9-204ENST00000544246 UBR5O95071 2799 aaPredicted RBP5.99□□□□□ -1.45
PCDH9-204ENST00000544246 CELSR3Q9NYQ7 3312 aa5.99□□□□□ -1.45
PCDH9-204ENST00000544246 ATMQ13315 3056 aa5.99□□□□□ -1.45
PCDH9-204ENST00000544246 MAP1AP78559 2803 aaPredicted RBP5.99□□□□□ -1.45
PCDH9-204ENST00000544246 TNP1P09430 55 aa5.98□□□□□ -1.45
PCDH9-204ENST00000544246 NOTCH1P46531 2555 aa5.97□□□□□ -1.45
PCDH9-204ENST00000544246 NBEAQ8NFP9 2946 aa5.95□□□□□ -1.46
PCDH9-204ENST00000544246 KMT2BQ9UMN6 2715 aaPredicted RBP5.95□□□□□ -1.46
PCDH9-204ENST00000544246 USP34Q70CQ2 3546 aa5.95□□□□□ -1.46
PCDH9-204ENST00000544246 A0A087X002 238 aa5.94□□□□□ -1.46
PCDH9-204ENST00000544246 TENM4Q6N022 2769 aa5.94□□□□□ -1.46
PCDH9-204ENST00000544246 BOD1L1Q8NFC6 3051 aa5.93□□□□□ -1.46
PCDH9-204ENST00000544246 UTP20O75691 2785 aaKnown RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms