RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CDH23Q9H251 3354 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 LOC730098B7Z3J9 87 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 PRB1P04280 392 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 LINC00158P58513 81 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 C10orf55Q5SWW7 151 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 CREBBPQ92793 2442 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 ALPK2Q86TB3 2170 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 PKD1L1Q8TDX9 2849 aa1.58□□□□□ -2.16
CD44-229ENST00000528672 COL4A2P08572 1712 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 TENM1Q9UKZ4 2725 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 XIRP2A4UGR9 3374 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 DEFB131BA0A096LNP1 70 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 H3BRN7 92 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 M0R2N4 97 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 NDUFA1O15239 70 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 ACYP2P14621 99 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 SMIM11BQ8TCY0 68 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 CCL19Q99731 98 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 GVINP1Q7Z2Y8 2422 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 KMT2CQ8NEZ4 4911 aaKnown RBP1.57□□□□□ -2.16
CD44-229ENST00000528672 DNAH14Q0VDD8 3507 aa1.57□□□□□ -2.16
CD44-229ENST00000528672 GPR98Q8WXG9 6306 aa1.56□□□□□ -2.16
CD44-229ENST00000528672 INE1O15225 51 aa1.56□□□□□ -2.16
CD44-229ENST00000528672 Q6ZQY7 126 aa1.56□□□□□ -2.16
CD44-229ENST00000528672 SSC5DA1L4H1 1573 aa1.55□□□□□ -2.16
CD44-229ENST00000528672 H3BSH0 61 aa1.55□□□□□ -2.16
CD44-229ENST00000528672 CDKN2A-AS1Q9UH64 79 aa1.55□□□□□ -2.16
CD44-229ENST00000528672 ALMS1Q8TCU4 4167 aa1.55□□□□□ -2.16
CD44-229ENST00000528672 RYR2Q92736 4967 aa1.55□□□□□ -2.16
CD44-229ENST00000528672 CSMD1Q96PZ7 3565 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 FRYQ5TBA9 3013 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 G3V318 75 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 LY6G6CO95867 125 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 SSBP3-AS1Q7Z2R9 100 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 Q8IZM0 81 aa1.54□□□□□ -2.16
CD44-229ENST00000528672 ITPR1Q14643 2758 aa1.53□□□□□ -2.16
CD44-229ENST00000528672 MRPL33O75394 65 aaKnown RBP1.53□□□□□ -2.16
CD44-229ENST00000528672 IGF2RP11717 2491 aa1.53□□□□□ -2.16
CD44-229ENST00000528672 OTOGLQ3ZCN5 2332 aa1.53□□□□□ -2.16
CD44-229ENST00000528672 SMG1Q96Q15 3661 aaKnown RBP1.53□□□□□ -2.17
CD44-229ENST00000528672 ZZEF1O43149 2961 aa1.53□□□□□ -2.17
CD44-229ENST00000528672 MTORP42345 2549 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 CEP295Q9C0D2 2601 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 J3QKU1 62 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 POLR2KP53803 58 aaKnown RBP1.52□□□□□ -2.17
CD44-229ENST00000528672 PRB3Q04118 309 aaPredicted RBP1.52□□□□□ -2.17
CD44-229ENST00000528672 Q6ZRX8 168 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 PLAC4Q8WY50 150 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 F5P12259 2224 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 ZANQ9Y493 2812 aa1.52□□□□□ -2.17
CD44-229ENST00000528672 RIF1Q5UIP0 2472 aaKnown RBP1.51□□□□□ -2.17
CD44-229ENST00000528672 HIVEP2P31629 2446 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 FAM186AA6NE01 2351 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 PDZD2O15018 2839 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 GVQW2A0A096LPI5 108 aaPredicted RBP1.51□□□□□ -2.17
CD44-229ENST00000528672 ANGP03950 147 aaKnown RBP1.51□□□□□ -2.17
CD44-229ENST00000528672 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 LINC00575Q6W349 94 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 MED13LQ71F56 2210 aa1.51□□□□□ -2.17
CD44-229ENST00000528672 EP300Q09472 2414 aaPredicted RBP1.5□□□□□ -2.17
CD44-229ENST00000528672 USP9YO00507 2555 aaPredicted RBP1.5□□□□□ -2.17
CD44-229ENST00000528672 A0A096LNT2 108 aa1.5□□□□□ -2.17
CD44-229ENST00000528672 KRTAP5-7Q6L8G8 165 aa1.5□□□□□ -2.17
CD44-229ENST00000528672 BRWD1Q9NSI6 2320 aa1.5□□□□□ -2.17
CD44-229ENST00000528672 HERC2O95714 4834 aa1.5□□□□□ -2.17
CD44-229ENST00000528672 FSIP2Q5CZC0 6907 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 SPTBN2O15020 2390 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 LOC400499M0QZD8 3231 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 RPS27P42677 84 aaKnown RBP1.49□□□□□ -2.17
CD44-229ENST00000528672 RPL39P62891 51 aaKnown RBP1.49□□□□□ -2.17
CD44-229ENST00000528672 CRIPTQ9P021 101 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 TECTAO75443 2155 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 UTP20O75691 2785 aaKnown RBP1.49□□□□□ -2.17
CD44-229ENST00000528672 VPS13AQ96RL7 3174 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 WDR87Q6ZQQ6 2873 aa1.49□□□□□ -2.17
CD44-229ENST00000528672 CACNA1CQ13936 2221 aa1.48□□□□□ -2.17
CD44-229ENST00000528672 SPTY2D1-AS1A0A0U1RR47 76 aa1.48□□□□□ -2.17
CD44-229ENST00000528672 SPINK9Q5DT21 86 aa1.48□□□□□ -2.17
CD44-229ENST00000528672 Q6ZRN7 208 aaPredicted RBP1.48□□□□□ -2.17
CD44-229ENST00000528672 RPL39LQ96EH5 51 aaKnown RBP1.48□□□□□ -2.17
CD44-229ENST00000528672 CELSR2Q9HCU4 2923 aa1.48□□□□□ -2.17
CD44-229ENST00000528672 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 DMXL1Q9Y485 3027 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 LYNX1G3V0Z9 82 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 I3L2K1 104 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 DEFB103AP81534 67 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 C10orf99Q6UWK7 81 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 ABCA13Q86UQ4 5058 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 NBEAQ8NFP9 2946 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 CADP27708 2225 aa1.47□□□□□ -2.17
CD44-229ENST00000528672 HIVEP3Q5T1R4 2406 aa1.46□□□□□ -2.18
CD44-229ENST00000528672 SORL1Q92673 2214 aa1.46□□□□□ -2.18
CD44-229ENST00000528672 CCL22O00626 93 aa1.46□□□□□ -2.18
CD44-229ENST00000528672 PIGYQ3MUY2 71 aa1.46□□□□□ -2.18
CD44-229ENST00000528672 ABCA1O95477 2261 aa1.45□□□□□ -2.18
CD44-229ENST00000528672 RTTNQ86VV8 2226 aa1.45□□□□□ -2.18
CD44-229ENST00000528672 BSNQ9UPA5 3926 aa1.45□□□□□ -2.18
CD44-229ENST00000528672 MEGF8Q7Z7M0 2845 aa1.45□□□□□ -2.18
CD44-229ENST00000528672 NEBP20929 6669 aa1.45□□□□□ -2.18
CD44-229ENST00000528672 CRYBG3Q68DQ2 2970 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms