RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	PRM1	P04553	51 aa		0.41	□□□□□ -2.34
MATR3-223	ENST00000514402	KRTAP21-1	Q3LI58	79 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	NMES1	Q9C002	83 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	TENM4	Q6N022	2769 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	ABCA2	Q9BZC7	2435 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	ATR	Q13535	2644 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	VWF	P04275	2813 aa		0.4	□□□□□ -2.35
MATR3-223	ENST00000514402	TNXB	P22105	4242 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	PHGR1	C9JFL3	82 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402		M0R2T5	61 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	DEFB135	Q30KP9	77 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	MINOS1	Q5TGZ0	78 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	UNC79	Q9P2D8	2635 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	PTPN13	Q12923	2485 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	NAV2	Q8IVL1	2488 aa		0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	SYNE1	Q8NF91	8797 aa	Known RBP	0.39	□□□□□ -2.35
MATR3-223	ENST00000514402	PDE4DIP	Q5VU43	2346 aa		0.38	□□□□□ -2.35
MATR3-223	ENST00000514402	IGIP	A6NJ69	53 aa		0.38	□□□□□ -2.35
MATR3-223	ENST00000514402	SERF2	P84101	59 aa		0.38	□□□□□ -2.35
MATR3-223	ENST00000514402	TOGARAM1	Q9Y4F4	1720 aa		0.37	□□□□□ -2.35
MATR3-223	ENST00000514402	USP24	Q9UPU5	2620 aa		0.37	□□□□□ -2.35
MATR3-223	ENST00000514402	EP300	Q09472	2414 aa	Predicted RBP	0.37	□□□□□ -2.35
MATR3-223	ENST00000514402	REV3L	O60673	3130 aa		0.37	□□□□□ -2.35
MATR3-223	ENST00000514402	FAT2	Q9NYQ8	4349 aa		0.37	□□□□□ -2.35
MATR3-223	ENST00000514402	FANCD2	Q9BXW9	1451 aa		0.36	□□□□□ -2.35
MATR3-223	ENST00000514402	C6orf48	Q9UBA6	75 aa		0.36	□□□□□ -2.35
MATR3-223	ENST00000514402	CDC42BPA	Q5VT25	1732 aa		0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	NCOR2	Q9Y618	2525 aa		0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	LRP1	Q07954	4544 aa	Known RBP	0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	CHD8	Q9HCK8	2581 aa		0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	CLASP1	Q7Z460	1538 aa		0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	BSN	Q9UPA5	3926 aa		0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	RPS27	P42677	84 aa	Known RBP	0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	RPS27L	Q71UM5	84 aa	Known RBP	0.35	□□□□□ -2.35
MATR3-223	ENST00000514402	AGL	P35573	1532 aa		0.34	□□□□□ -2.35
MATR3-223	ENST00000514402	HIVEP3	Q5T1R4	2406 aa		0.34	□□□□□ -2.35
MATR3-223	ENST00000514402	ADCY10	Q96PN6	1610 aa		0.34	□□□□□ -2.36
MATR3-223	ENST00000514402	OTOG	Q6ZRI0	2925 aa		0.34	□□□□□ -2.36
MATR3-223	ENST00000514402		H0YGG7	62 aa		0.33	□□□□□ -2.36
MATR3-223	ENST00000514402	DEFB106A	Q8N104	65 aa		0.33	□□□□□ -2.36
MATR3-223	ENST00000514402	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.33	□□□□□ -2.36
MATR3-223	ENST00000514402	ANKRD36C	Q5JPF3	1778 aa		0.32	□□□□□ -2.36
MATR3-223	ENST00000514402	WT1-AS	Q06250	92 aa		0.32	□□□□□ -2.36
MATR3-223	ENST00000514402	UBR5	O95071	2799 aa	Predicted RBP	0.32	□□□□□ -2.36
MATR3-223	ENST00000514402	NRXN3	Q9Y4C0	1643 aa		0.31	□□□□□ -2.36
MATR3-223	ENST00000514402	FAT4	Q6V0I7	4981 aa		0.31	□□□□□ -2.36
MATR3-223	ENST00000514402	SPRR2D	P22532	72 aa		0.31	□□□□□ -2.36
MATR3-223	ENST00000514402		S4R3F8	94 aa		0.31	□□□□□ -2.36
MATR3-223	ENST00000514402	ALMS1	Q8TCU4	4167 aa		0.31	□□□□□ -2.36
MATR3-223	ENST00000514402	BPTF	Q12830	3046 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	CACNA1A	O00555	2505 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	EFCAB6	Q5THR3	1501 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	LINC00308	Q8TCZ7	52 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	TMEM167B	Q9NRX6	74 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	ABCC8	Q09428	1581 aa		0.3	□□□□□ -2.36
MATR3-223	ENST00000514402	PRKDC	P78527	4128 aa	Known RBP	0.29	□□□□□ -2.36
MATR3-223	ENST00000514402	PLN	P26678	52 aa		0.29	□□□□□ -2.36
MATR3-223	ENST00000514402	PRLH	P81277	87 aa		0.29	□□□□□ -2.36
MATR3-223	ENST00000514402	MAP1B	P46821	2468 aa	Known RBP	0.29	□□□□□ -2.36
MATR3-223	ENST00000514402	CREBBP	Q92793	2442 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	TRANK1	O15050	2925 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	ABCA5	Q8WWZ7	1642 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	HECTD1	Q9ULT8	2610 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402		H0YGX0	51 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	CMC2	Q9NRP2	79 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	WNK1	Q9H4A3	2382 aa		0.28	□□□□□ -2.36
MATR3-223	ENST00000514402	LPA	P08519	4548 aa		0.28	□□□□□ -2.37
MATR3-223	ENST00000514402	MYCBP2	O75592	4640 aa		0.27	□□□□□ -2.37
MATR3-223	ENST00000514402	SNRPGP15	A8MWD9	76 aa		0.27	□□□□□ -2.37
MATR3-223	ENST00000514402	APC2	O95996	2303 aa		0.27	□□□□□ -2.37
MATR3-223	ENST00000514402	ACAN	P16112	2415 aa		0.27	□□□□□ -2.37
MATR3-223	ENST00000514402	IGSF10	Q6WRI0	2623 aa		0.27	□□□□□ -2.37
MATR3-223	ENST00000514402	PCNX1	Q96RV3	2341 aa		0.26	□□□□□ -2.37
MATR3-223	ENST00000514402	MAST4	O15021	2626 aa		0.26	□□□□□ -2.37
MATR3-223	ENST00000514402	DSP	P15924	2871 aa	Known RBP	0.26	□□□□□ -2.37
MATR3-223	ENST00000514402	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.26	□□□□□ -2.37
MATR3-223	ENST00000514402	CELSR1	Q9NYQ6	3014 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402	AKAP13	Q12802	2813 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402	PKD1L1	Q8TDX9	2849 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402	NBAS	A2RRP1	2371 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402	LMO7	Q8WWI1	1683 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402	KMT2A	Q03164	3969 aa		0.25	□□□□□ -2.37
MATR3-223	ENST00000514402		A0A1B0GUL6	1792 aa		0.24	□□□□□ -2.37
MATR3-223	ENST00000514402	IQGAP1	P46940	1657 aa		0.24	□□□□□ -2.37
MATR3-223	ENST00000514402		H3BUA1	57 aa		0.24	□□□□□ -2.37
MATR3-223	ENST00000514402	SPRR2B	P35325	72 aa		0.24	□□□□□ -2.37
MATR3-223	ENST00000514402	CEP290	O15078	2479 aa		0.24	□□□□□ -2.37
MATR3-223	ENST00000514402	SETX	Q7Z333	2677 aa	Known RBP	0.23	□□□□□ -2.37
MATR3-223	ENST00000514402	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.22	□□□□□ -2.37
MATR3-223	ENST00000514402	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	0.22	□□□□□ -2.37
MATR3-223	ENST00000514402	HSPG2	P98160	4391 aa		0.22	□□□□□ -2.37
MATR3-223	ENST00000514402	HECTD4	Q9Y4D8	3996 aa		0.22	□□□□□ -2.37
MATR3-223	ENST00000514402	NSD1	Q96L73	2696 aa	Predicted RBP	0.21	□□□□□ -2.38
MATR3-223	ENST00000514402	KIF21B	O75037	1637 aa		0.21	□□□□□ -2.38
MATR3-223	ENST00000514402	ABRACL	Q9P1F3	81 aa		0.21	□□□□□ -2.38
MATR3-223	ENST00000514402	KAAG1	Q9UBP8	84 aa		0.21	□□□□□ -2.38
MATR3-223	ENST00000514402	PKD1L2	Q7Z442	2459 aa		0.21	□□□□□ -2.38
MATR3-223	ENST00000514402		H3BNG1	76 aa		0.2	□□□□□ -2.38
MATR3-223	ENST00000514402	TFF3	Q07654	80 aa		0.2	□□□□□ -2.38
MATR3-223	ENST00000514402	DDX60	Q8IY21	1712 aa	Known RBP	0.19	□□□□□ -2.38

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms