RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, humanhuman

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-223ENST00000514402 AEBP2Q6ZN18 517 aaPredicted RBP25.07■■□□□ 1.6
MATR3-223ENST00000514402 CHIC1Q5VXU3 224 aa24.42■■□□□ 1.5
MATR3-223ENST00000514402 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
MATR3-223ENST00000514402 PHF23Q9BUL5 403 aaPredicted RBP21.37■■□□□ 1.01
MATR3-223ENST00000514402 FOXD1Q16676 465 aa19.81■□□□□ 0.76
MATR3-223ENST00000514402 PLPPR3Q6T4P5 718 aa19.8■□□□□ 0.76
MATR3-223ENST00000514402 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
MATR3-223ENST00000514402 ADRA2BP18089 450 aa18.85■□□□□ 0.61
MATR3-223ENST00000514402 PIAS4Q8N2W9 510 aaPredicted RBP18.66■□□□□ 0.58
MATR3-223ENST00000514402 MSH5O43196 834 aa18.45■□□□□ 0.54
MATR3-223ENST00000514402 POTEDQ86YR6 584 aa18.22■□□□□ 0.51
MATR3-223ENST00000514402 SCAF1Q9H7N4 1312 aaKnown RBP17.43■□□□□ 0.38
MATR3-223ENST00000514402 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
MATR3-223ENST00000514402 MAPK8IP2Q13387 824 aaPredicted RBP17.13■□□□□ 0.33
MATR3-223ENST00000514402 DMRT2Q9Y5R5 561 aa17.06■□□□□ 0.32
MATR3-223ENST00000514402 CNKSR2Q8WXI2 1034 aa16.97■□□□□ 0.31
MATR3-223ENST00000514402 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
MATR3-223ENST00000514402 KCNA4P22459 653 aa16.72■□□□□ 0.27
MATR3-223ENST00000514402 RNF216Q9NWF9 866 aaPredicted RBP16.69■□□□□ 0.26
MATR3-223ENST00000514402 HOXD11P31277 338 aaPredicted RBP16.66■□□□□ 0.26
MATR3-223ENST00000514402 NPM3O75607 178 aaKnown RBP16.61■□□□□ 0.25
MATR3-223ENST00000514402 DNAJC5BQ9UF47 199 aa16.32■□□□□ 0.2
MATR3-223ENST00000514402 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
MATR3-223ENST00000514402 SLC4A1APQ9BWU0 796 aaKnown RBP15.94■□□□□ 0.14
MATR3-223ENST00000514402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.82■□□□□ 0.127e-12■□□□□ 11
MATR3-223ENST00000514402 RNF39Q9H2S5 420 aa15.74■□□□□ 0.11
MATR3-223ENST00000514402 SLC4A2P04920 1241 aa15.7■□□□□ 0.1
MATR3-223ENST00000514402 CACNB1Q02641 598 aaPredicted RBP15.65■□□□□ 0.1
MATR3-223ENST00000514402 C1QBPQ07021 282 aaKnown RBP15.59■□□□□ 0.09
MATR3-223ENST00000514402 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
MATR3-223ENST00000514402 FOXD4L1Q9NU39 408 aa15.52■□□□□ 0.08
MATR3-223ENST00000514402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.42■□□□□ 0.06
MATR3-223ENST00000514402 HNRNPUL2Q1KMD3 747 aaKnown RBP15.42■□□□□ 0.06
MATR3-223ENST00000514402 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
MATR3-223ENST00000514402 ZBTB22O15209 634 aa15.35■□□□□ 0.05
MATR3-223ENST00000514402 APLP2Q06481 763 aa15.32■□□□□ 0.04
MATR3-223ENST00000514402 SAMD1Q6SPF0 538 aaPredicted RBP15.32■□□□□ 0.04
MATR3-223ENST00000514402 EHMT2Q96KQ7 1210 aa15.21■□□□□ 0.03
MATR3-223ENST00000514402 CSRNP3Q8WYN3 585 aa15.17■□□□□ 0.02
MATR3-223ENST00000514402 SPINK5Q9NQ38 1064 aaPredicted RBP15.1■□□□□ 0.01
MATR3-223ENST00000514402 CAPN15O75808 1086 aa15.09■□□□□ 0.01
MATR3-223ENST00000514402 ATXN8OSP0DMR3 200 aa15.07■□□□□ 0
MATR3-223ENST00000514402 ZNF219Q9P2Y4 722 aaPredicted RBP15.07■□□□□ 0
MATR3-223ENST00000514402 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
MATR3-223ENST00000514402 DSG3P32926 999 aa14.9□□□□□ -0.02
MATR3-223ENST00000514402 ATF5Q9Y2D1 282 aaPredicted RBP14.88□□□□□ -0.03
MATR3-223ENST00000514402 ABCB7O75027 752 aa14.73□□□□□ -0.05
MATR3-223ENST00000514402 POLA2Q14181 598 aa14.7□□□□□ -0.06
MATR3-223ENST00000514402 ZBTB12Q9Y330 459 aaPredicted RBP14.58□□□□□ -0.08
MATR3-223ENST00000514402 FBLN2P98095 1184 aa14.39□□□□□ -0.11
MATR3-223ENST00000514402 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
MATR3-223ENST00000514402 MKRN4PQ13434 485 aaPredicted RBP14.26□□□□□ -0.13
MATR3-223ENST00000514402 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
MATR3-223ENST00000514402 POTEHQ6S545 545 aa14.18□□□□□ -0.14
MATR3-223ENST00000514402 SPDYE2BA6NHP3 402 aa14.13□□□□□ -0.15
MATR3-223ENST00000514402 SPDYE6P0CI01 402 aa14.13□□□□□ -0.15
MATR3-223ENST00000514402 SPDYE2Q495Y8 402 aa14.13□□□□□ -0.15
MATR3-223ENST00000514402 AKT1S1Q96B36 256 aa14.05□□□□□ -0.16
MATR3-223ENST00000514402 ZNF692Q9BU19 519 aaPredicted RBP13.99□□□□□ -0.17
MATR3-223ENST00000514402 SSUH2Q9Y2M2 353 aa13.98□□□□□ -0.17
MATR3-223ENST00000514402 SPDYE4A6NLX3 237 aa13.9□□□□□ -0.18
MATR3-223ENST00000514402 REM2Q8IYK8 340 aaPredicted RBP13.85□□□□□ -0.19
MATR3-223ENST00000514402 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.2
MATR3-223ENST00000514402 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
MATR3-223ENST00000514402 FKBP8Q14318 412 aa13.72□□□□□ -0.21
MATR3-223ENST00000514402 PROM2Q8N271 834 aa13.71□□□□□ -0.21
MATR3-223ENST00000514402 PITPNM1O00562 1244 aa13.69□□□□□ -0.22
MATR3-223ENST00000514402 CHRDL2Q6WN34 429 aa13.68□□□□□ -0.22
MATR3-223ENST00000514402 STAG3Q9UJ98 1225 aa13.63□□□□□ -0.23
MATR3-223ENST00000514402 CLEC11AQ9Y240 323 aa13.6□□□□□ -0.23
MATR3-223ENST00000514402 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
MATR3-223ENST00000514402 FXR2P51116 673 aaKnown RBP eCLIP13.51□□□□□ -0.25
MATR3-223ENST00000514402 PIP4P2Q8N4L2 257 aa13.46□□□□□ -0.25
MATR3-223ENST00000514402 FBXO3Q9UK99 471 aa13.4□□□□□ -0.26
MATR3-223ENST00000514402 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
MATR3-223ENST00000514402 CREBZFQ9NS37 354 aa13.27□□□□□ -0.29
MATR3-223ENST00000514402 PLEKHG5O94827 1062 aa13.24□□□□□ -0.29
MATR3-223ENST00000514402 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
MATR3-223ENST00000514402 MIER1Q8N108 512 aa13.18□□□□□ -0.3
MATR3-223ENST00000514402 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
MATR3-223ENST00000514402 PLCD3Q8N3E9 789 aa13.16□□□□□ -0.3
MATR3-223ENST00000514402 VASPP50552 380 aaPredicted RBP13.14□□□□□ -0.31
MATR3-223ENST00000514402 ZBTB47Q9UFB7 747 aaPredicted RBP13.14□□□□□ -0.31
MATR3-223ENST00000514402 NPM1P06748 294 aaKnown RBP eCLIP13.12□□□□□ -0.31
MATR3-223ENST00000514402 MNX1P50219 401 aaPredicted RBP13.12□□□□□ -0.31
MATR3-223ENST00000514402 C19orf67A6NJJ6 358 aa13.05□□□□□ -0.32
MATR3-223ENST00000514402 HAX1O00165 279 aa13.05□□□□□ -0.32
MATR3-223ENST00000514402 SP7Q8TDD2 431 aaPredicted RBP13.05□□□□□ -0.32
MATR3-223ENST00000514402 CD44P16070 742 aaKnown RBP12.96□□□□□ -0.33
MATR3-223ENST00000514402 PAK3O75914 559 aaPredicted RBP12.94□□□□□ -0.34
MATR3-223ENST00000514402 KLHL34Q8N239 644 aa12.93□□□□□ -0.34
MATR3-223ENST00000514402 IFNLR1Q8IU57 520 aaPredicted RBP12.92□□□□□ -0.34
MATR3-223ENST00000514402 NUBP1P53384 320 aa12.88□□□□□ -0.35
MATR3-223ENST00000514402 CLCN6P51797 869 aa12.86□□□□□ -0.35
MATR3-223ENST00000514402 EVX2Q03828 476 aa12.86□□□□□ -0.35
MATR3-223ENST00000514402 SPOCK2Q92563 424 aa12.85□□□□□ -0.35
MATR3-223ENST00000514402 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
MATR3-223ENST00000514402 RASEFQ8IZ41 740 aa12.83□□□□□ -0.36
MATR3-223ENST00000514402 ZNF579Q8NAF0 562 aaKnown RBP12.83□□□□□ -0.36
MATR3-223ENST00000514402 FAM212AQ96EL1 285 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms