RNA–Protein interactions for RNA: ENST00000504274.1

COPS4-203, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 2

Gene COPS4, Length 457 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-203ENST00000504274 DEFB130BP0DP73 79 aa0.67□□□□□ -2.3
COPS4-203ENST00000504274 DEFB130AP0DP74 79 aa0.67□□□□□ -2.3
COPS4-203ENST00000504274 CHD6Q8TD26 2715 aa0.67□□□□□ -2.3
COPS4-203ENST00000504274 NCOR1O75376 2440 aa0.66□□□□□ -2.3
COPS4-203ENST00000504274 PRKDCP78527 4128 aaKnown RBP0.66□□□□□ -2.3
COPS4-203ENST00000504274 DEFB109BQ30KR1 87 aa0.66□□□□□ -2.3
COPS4-203ENST00000504274 DDX60Q8IY21 1712 aaKnown RBP0.66□□□□□ -2.3
COPS4-203ENST00000504274 TPRP12270 2363 aaKnown RBP0.65□□□□□ -2.3
COPS4-203ENST00000504274 OTOGQ6ZRI0 2925 aa0.65□□□□□ -2.3
COPS4-203ENST00000504274 TENM4Q6N022 2769 aa0.65□□□□□ -2.3
COPS4-203ENST00000504274 NMES1Q9C002 83 aa0.65□□□□□ -2.31
COPS4-203ENST00000504274 FAT2Q9NYQ8 4349 aa0.64□□□□□ -2.31
COPS4-203ENST00000504274 IQGAP2Q13576 1575 aa0.64□□□□□ -2.31
COPS4-203ENST00000504274 PKDREJQ9NTG1 2253 aa0.64□□□□□ -2.31
COPS4-203ENST00000504274 DSPP15924 2871 aaKnown RBP0.63□□□□□ -2.31
COPS4-203ENST00000504274 AKAP6Q13023 2319 aa0.63□□□□□ -2.31
COPS4-203ENST00000504274 IAPPP10997 89 aa0.63□□□□□ -2.31
COPS4-203ENST00000504274 RPS27P42677 84 aaKnown RBP0.63□□□□□ -2.31
COPS4-203ENST00000504274 RPS27LQ71UM5 84 aaKnown RBP0.63□□□□□ -2.31
COPS4-203ENST00000504274 ATRQ13535 2644 aa0.63□□□□□ -2.31
COPS4-203ENST00000504274 FAM208AQ9UK61 1670 aaKnown RBP0.62□□□□□ -2.31
COPS4-203ENST00000504274 NFAT5O94916 1531 aa0.62□□□□□ -2.31
COPS4-203ENST00000504274 IGF2RP11717 2491 aa0.62□□□□□ -2.31
COPS4-203ENST00000504274 WNK2Q9Y3S1 2297 aa0.61□□□□□ -2.31
COPS4-203ENST00000504274 SPINK6Q6UWN8 80 aa0.61□□□□□ -2.31
COPS4-203ENST00000504274 CELSR1Q9NYQ6 3014 aa0.61□□□□□ -2.31
COPS4-203ENST00000504274 CMC2Q9NRP2 79 aa0.6□□□□□ -2.31
COPS4-203ENST00000504274 TRANK1O15050 2925 aa0.6□□□□□ -2.31
COPS4-203ENST00000504274 CSPG4Q6UVK1 2322 aa0.59□□□□□ -2.31
COPS4-203ENST00000504274 SPINK4O60575 86 aa0.59□□□□□ -2.31
COPS4-203ENST00000504274 PRM1P04553 51 aa0.58□□□□□ -2.32
COPS4-203ENST00000504274 PLNP26678 52 aa0.58□□□□□ -2.32
COPS4-203ENST00000504274 SERF2P84101 59 aa0.58□□□□□ -2.32
COPS4-203ENST00000504274 MINOS1Q5TGZ0 78 aa0.58□□□□□ -2.32
COPS4-203ENST00000504274 PCNX1Q96RV3 2341 aa0.58□□□□□ -2.32
COPS4-203ENST00000504274 PDE4DIPQ5VU43 2346 aa0.57□□□□□ -2.32
COPS4-203ENST00000504274 SMIM27A0A1W2PRY6 76 aa0.57□□□□□ -2.32
COPS4-203ENST00000504274 LINC01546A6NGU7 62 aa0.57□□□□□ -2.32
COPS4-203ENST00000504274 KRTAP21-1Q3LI58 79 aa0.57□□□□□ -2.32
COPS4-203ENST00000504274 ABCA2Q9BZC7 2435 aa0.57□□□□□ -2.32
COPS4-203ENST00000504274 LINC00308Q8TCZ7 52 aa0.56□□□□□ -2.32
COPS4-203ENST00000504274 C6orf48Q9UBA6 75 aa0.56□□□□□ -2.32
COPS4-203ENST00000504274 KIF21BO75037 1637 aa0.55□□□□□ -2.32
COPS4-203ENST00000504274 AKAP13Q12802 2813 aa0.55□□□□□ -2.32
COPS4-203ENST00000504274 LYSTQ99698 3801 aa0.54□□□□□ -2.32
COPS4-203ENST00000504274 LRP1Q07954 4544 aaKnown RBP0.54□□□□□ -2.32
COPS4-203ENST00000504274 PRRC2CQ9Y520 2896 aaKnown RBP0.53□□□□□ -2.32
COPS4-203ENST00000504274 H0YGX0 51 aa0.53□□□□□ -2.32
COPS4-203ENST00000504274 S4R3F8 94 aa0.53□□□□□ -2.32
COPS4-203ENST00000504274 HUWE1Q7Z6Z7 4374 aaKnown RBP0.53□□□□□ -2.32
COPS4-203ENST00000504274 SPTA1P02549 2419 aa0.53□□□□□ -2.33
COPS4-203ENST00000504274 WT1-ASQ06250 92 aa0.52□□□□□ -2.33
COPS4-203ENST00000504274 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 TFF3Q07654 80 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 PKD1L1Q8TDX9 2849 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 TMEM167BQ9NRX6 74 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 ABRACLQ9P1F3 81 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 KMT2AQ03164 3969 aa0.51□□□□□ -2.33
COPS4-203ENST00000504274 TNRC18O15417 2968 aaPredicted RBP0.51□□□□□ -2.33
COPS4-203ENST00000504274 U3KQA8 63 aa0.5□□□□□ -2.33
COPS4-203ENST00000504274 ZFYVE26Q68DK2 2539 aa0.5□□□□□ -2.33
COPS4-203ENST00000504274 UNC79Q9P2D8 2635 aa0.5□□□□□ -2.33
COPS4-203ENST00000504274 ATP7AQ04656 1500 aa0.49□□□□□ -2.33
COPS4-203ENST00000504274 SPINK1P00995 79 aa0.49□□□□□ -2.33
COPS4-203ENST00000504274 TOMM5Q8N4H5 51 aa0.49□□□□□ -2.33
COPS4-203ENST00000504274 EP300Q09472 2414 aaPredicted RBP0.49□□□□□ -2.33
COPS4-203ENST00000504274 MYCBP2O75592 4640 aa0.48□□□□□ -2.33
COPS4-203ENST00000504274 CLTCL1P53675 1640 aa0.47□□□□□ -2.33
COPS4-203ENST00000504274 SYNE1Q8NF91 8797 aaKnown RBP0.47□□□□□ -2.33
COPS4-203ENST00000504274 M0R2T5 61 aa0.47□□□□□ -2.33
COPS4-203ENST00000504274 TIMM8BQ9Y5J9 83 aaPredicted RBP0.47□□□□□ -2.33
COPS4-203ENST00000504274 VPS13BQ7Z7G8 4022 aa0.47□□□□□ -2.33
COPS4-203ENST00000504274 UBR5O95071 2799 aaPredicted RBP0.47□□□□□ -2.33
COPS4-203ENST00000504274 AHNAKQ09666 5890 aaKnown RBP0.46□□□□□ -2.34
COPS4-203ENST00000504274 CHD8Q9HCK8 2581 aa0.46□□□□□ -2.34
COPS4-203ENST00000504274 PDZD2O15018 2839 aa0.46□□□□□ -2.34
COPS4-203ENST00000504274 DEFB135Q30KP9 77 aa0.46□□□□□ -2.34
COPS4-203ENST00000504274 DEFB106AQ8N104 65 aa0.46□□□□□ -2.34
COPS4-203ENST00000504274 GCC2Q8IWJ2 1684 aa0.46□□□□□ -2.34
COPS4-203ENST00000504274 PRLHP81277 87 aa0.45□□□□□ -2.34
COPS4-203ENST00000504274 HRNRQ86YZ3 2850 aaPredicted RBP0.44□□□□□ -2.34
COPS4-203ENST00000504274 MROH2BQ7Z745 1585 aa0.44□□□□□ -2.34
COPS4-203ENST00000504274 TRPM2O94759 1503 aa0.43□□□□□ -2.34
COPS4-203ENST00000504274 CEP290O15078 2479 aa0.43□□□□□ -2.34
COPS4-203ENST00000504274 HECTD1Q9ULT8 2610 aa0.43□□□□□ -2.34
COPS4-203ENST00000504274 NBASA2RRP1 2371 aa0.43□□□□□ -2.34
COPS4-203ENST00000504274 SAMD9LQ8IVG5 1584 aa0.42□□□□□ -2.34
COPS4-203ENST00000504274 LPAP08519 4548 aa0.41□□□□□ -2.34
COPS4-203ENST00000504274 USP24Q9UPU5 2620 aa0.41□□□□□ -2.34
COPS4-203ENST00000504274 SPRR2DP22532 72 aa0.41□□□□□ -2.34
COPS4-203ENST00000504274 SNRPGP62308 76 aaKnown RBP0.41□□□□□ -2.34
COPS4-203ENST00000504274 PKD1P98161 4303 aa0.41□□□□□ -2.34
COPS4-203ENST00000504274 MUC5BQ9HC84 5762 aaPredicted RBP0.4□□□□□ -2.34
COPS4-203ENST00000504274 KAAG1Q9UBP8 84 aa0.4□□□□□ -2.35
COPS4-203ENST00000504274 FAT4Q6V0I7 4981 aa0.4□□□□□ -2.35
COPS4-203ENST00000504274 NAV2Q8IVL1 2488 aa0.4□□□□□ -2.35
COPS4-203ENST00000504274 ACANP16112 2415 aa0.39□□□□□ -2.35
COPS4-203ENST00000504274 HIVEP3Q5T1R4 2406 aa0.39□□□□□ -2.35
COPS4-203ENST00000504274 CACNA1AO00555 2505 aa0.39□□□□□ -2.35
COPS4-203ENST00000504274 SETXQ7Z333 2677 aaKnown RBP0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms