RNA–Protein interactions for RNA: ENST00000504274.1

COPS4-203, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 2

Gene COPS4, Length 457 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-203ENST00000504274 AEBP2Q6ZN18 517 aaPredicted RBP27.2■■□□□ 1.94
COPS4-203ENST00000504274 CHIC1Q5VXU3 224 aa26.6■■□□□ 1.85
COPS4-203ENST00000504274 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
COPS4-203ENST00000504274 SENP3Q9H4L4 574 aaPredicted RBP22.94■■□□□ 1.26
COPS4-203ENST00000504274 PLPPR3Q6T4P5 718 aa21.6■■□□□ 1.05
COPS4-203ENST00000504274 FOXD1Q16676 465 aa21.37■■□□□ 1.01
COPS4-203ENST00000504274 PPP6R1Q9UPN7 881 aa20.69■□□□□ 0.9
COPS4-203ENST00000504274 ADRA2BP18089 450 aa20.66■□□□□ 0.9
COPS4-203ENST00000504274 PIAS4Q8N2W9 510 aaPredicted RBP20.13■□□□□ 0.81
COPS4-203ENST00000504274 MSH5O43196 834 aa19.55■□□□□ 0.72
COPS4-203ENST00000504274 PPP4R3CPQ6ZMV5 832 aa19.11■□□□□ 0.65
COPS4-203ENST00000504274 KCNA4P22459 653 aa18.83■□□□□ 0.6
COPS4-203ENST00000504274 SCAF1Q9H7N4 1312 aaKnown RBP18.75■□□□□ 0.59
COPS4-203ENST00000504274 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
COPS4-203ENST00000504274 NCBP3Q53F19 620 aaKnown RBP18.55■□□□□ 0.56
COPS4-203ENST00000504274 CNKSR2Q8WXI2 1034 aa18.5■□□□□ 0.55
COPS4-203ENST00000504274 NPM3O75607 178 aaKnown RBP18.38■□□□□ 0.53
COPS4-203ENST00000504274 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
COPS4-203ENST00000504274 RNF216Q9NWF9 866 aaPredicted RBP18.11■□□□□ 0.49
COPS4-203ENST00000504274 HOXD11P31277 338 aaPredicted RBP18.03■□□□□ 0.48
COPS4-203ENST00000504274 SLC4A1APQ9BWU0 796 aaKnown RBP17.9■□□□□ 0.46
COPS4-203ENST00000504274 DNAJC5BQ9UF47 199 aa17.75■□□□□ 0.43
COPS4-203ENST00000504274 POTEDQ86YR6 584 aa17.69■□□□□ 0.42
COPS4-203ENST00000504274 EHMT2Q96KQ7 1210 aa17.57■□□□□ 0.4
COPS4-203ENST00000504274 DCAF8L1A6NGE4 600 aa17.56■□□□□ 0.4
COPS4-203ENST00000504274 ZBTB22O15209 634 aa17.37■□□□□ 0.37
COPS4-203ENST00000504274 SLC4A2P04920 1241 aa17.36■□□□□ 0.37
COPS4-203ENST00000504274 CSRNP3Q8WYN3 585 aa17.33■□□□□ 0.36
COPS4-203ENST00000504274 FOXD4L1Q9NU39 408 aa17.23■□□□□ 0.35
COPS4-203ENST00000504274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.16■□□□□ 0.34
COPS4-203ENST00000504274 U3KPZ7 1027 aaPredicted RBP16.96■□□□□ 0.31
COPS4-203ENST00000504274 MYCNP04198 464 aaPredicted RBP16.92■□□□□ 0.3
COPS4-203ENST00000504274 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
COPS4-203ENST00000504274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
COPS4-203ENST00000504274 HNRNPUL2Q1KMD3 747 aaKnown RBP16.64■□□□□ 0.25
COPS4-203ENST00000504274 SAMD1Q6SPF0 538 aaPredicted RBP16.62■□□□□ 0.25
COPS4-203ENST00000504274 C1QBPQ07021 282 aaKnown RBP16.58■□□□□ 0.24
COPS4-203ENST00000504274 ATF5Q9Y2D1 282 aaPredicted RBP16.58■□□□□ 0.24
COPS4-203ENST00000504274 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
COPS4-203ENST00000504274 SPINK5Q9NQ38 1064 aaPredicted RBP16.47■□□□□ 0.23
COPS4-203ENST00000504274 APLP2Q06481 763 aa16.41■□□□□ 0.22
COPS4-203ENST00000504274 CAPN15O75808 1086 aa16.33■□□□□ 0.2
COPS4-203ENST00000504274 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
COPS4-203ENST00000504274 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
COPS4-203ENST00000504274 ZNF219Q9P2Y4 722 aaPredicted RBP16.24■□□□□ 0.19
COPS4-203ENST00000504274 ABCB7O75027 752 aa16.09■□□□□ 0.17
COPS4-203ENST00000504274 POLA2Q14181 598 aa16.07■□□□□ 0.16
COPS4-203ENST00000504274 DSG3P32926 999 aa16.06■□□□□ 0.16
COPS4-203ENST00000504274 MKRN4PQ13434 485 aaPredicted RBP15.85■□□□□ 0.13
COPS4-203ENST00000504274 FBLN2P98095 1184 aa15.73■□□□□ 0.11
COPS4-203ENST00000504274 ZBTB12Q9Y330 459 aaPredicted RBP15.71■□□□□ 0.11
COPS4-203ENST00000504274 FKBP8Q14318 412 aa15.62■□□□□ 0.09
COPS4-203ENST00000504274 OSCARQ8IYS5 282 aa15.53■□□□□ 0.08
COPS4-203ENST00000504274 SPDYE4A6NLX3 237 aa15.48■□□□□ 0.07
COPS4-203ENST00000504274 SPDYE2BA6NHP3 402 aa15.34■□□□□ 0.05
COPS4-203ENST00000504274 SPDYE6P0CI01 402 aa15.34■□□□□ 0.05
COPS4-203ENST00000504274 SPDYE2Q495Y8 402 aa15.34■□□□□ 0.05
COPS4-203ENST00000504274 ZNF692Q9BU19 519 aaPredicted RBP15.32■□□□□ 0.04
COPS4-203ENST00000504274 SSUH2Q9Y2M2 353 aa15.28■□□□□ 0.04
COPS4-203ENST00000504274 PROM2Q8N271 834 aa15.25■□□□□ 0.03
COPS4-203ENST00000504274 RBM42Q9BTD8 480 aaKnown RBP15.2■□□□□ 0.02
COPS4-203ENST00000504274 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
COPS4-203ENST00000504274 AKT1S1Q96B36 256 aa15.08■□□□□ 0
COPS4-203ENST00000504274 REM2Q8IYK8 340 aaPredicted RBP14.99□□□□□ -0.01
COPS4-203ENST00000504274 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
COPS4-203ENST00000504274 SPDYE1Q8NFV5 336 aaPredicted RBP14.86□□□□□ -0.03
COPS4-203ENST00000504274 PITPNM1O00562 1244 aa14.83□□□□□ -0.04
COPS4-203ENST00000504274 STAG3Q9UJ98 1225 aa14.83□□□□□ -0.04
COPS4-203ENST00000504274 CLEC11AQ9Y240 323 aa14.82□□□□□ -0.04
COPS4-203ENST00000504274 VASPP50552 380 aaPredicted RBP14.81□□□□□ -0.04
COPS4-203ENST00000504274 PRR29P0C7W0 189 aa14.69□□□□□ -0.06
COPS4-203ENST00000504274 IFNLR1Q8IU57 520 aaPredicted RBP14.66□□□□□ -0.06
COPS4-203ENST00000504274 MIER1Q8N108 512 aa14.65□□□□□ -0.06
COPS4-203ENST00000504274 PLCD3Q8N3E9 789 aa14.63□□□□□ -0.07
COPS4-203ENST00000504274 CHRDL2Q6WN34 429 aa14.59□□□□□ -0.07
COPS4-203ENST00000504274 CREBZFQ9NS37 354 aa14.59□□□□□ -0.07
COPS4-203ENST00000504274 FXR2P51116 673 aaKnown RBP eCLIP14.51□□□□□ -0.09
COPS4-203ENST00000504274 KLHL34Q8N239 644 aa14.51□□□□□ -0.09
COPS4-203ENST00000504274 CHADLQ6NUI6 762 aa14.5□□□□□ -0.09
COPS4-203ENST00000504274 PIP4P2Q8N4L2 257 aa14.47□□□□□ -0.09
COPS4-203ENST00000504274 PLEKHG5O94827 1062 aa14.46□□□□□ -0.09
COPS4-203ENST00000504274 MNX1P50219 401 aaPredicted RBP14.46□□□□□ -0.09
COPS4-203ENST00000504274 PRKAR2AP13861 404 aaKnown RBP14.44□□□□□ -0.1
COPS4-203ENST00000504274 RTN4Q9NQC3 1192 aaKnown RBP14.44□□□□□ -0.1
COPS4-203ENST00000504274 SPOCK2Q92563 424 aa14.41□□□□□ -0.1
COPS4-203ENST00000504274 ZBTB47Q9UFB7 747 aaPredicted RBP14.38□□□□□ -0.11
COPS4-203ENST00000504274 AMER1Q5JTC6 1135 aaPredicted RBP14.37□□□□□ -0.11
COPS4-203ENST00000504274 FARP1Q9Y4F1 1045 aaPredicted RBP14.33□□□□□ -0.12
COPS4-203ENST00000504274 NUBP1P53384 320 aa14.31□□□□□ -0.12
COPS4-203ENST00000504274 NPM1P06748 294 aaKnown RBP eCLIP14.25□□□□□ -0.13
COPS4-203ENST00000504274 RASEFQ8IZ41 740 aa14.23□□□□□ -0.13
COPS4-203ENST00000504274 PKD2Q13563 968 aa14.21□□□□□ -0.13
COPS4-203ENST00000504274 CIZ1Q9ULV3 898 aaPredicted RBP14.18□□□□□ -0.14
COPS4-203ENST00000504274 DCAF8Q5TAQ9 597 aa14.15□□□□□ -0.14
COPS4-203ENST00000504274 FAM212AQ96EL1 285 aa14.11□□□□□ -0.15
COPS4-203ENST00000504274 GSE1Q14687 1217 aa14.1□□□□□ -0.15
COPS4-203ENST00000504274 TSPYL2Q9H2G4 693 aaPredicted RBP14.1□□□□□ -0.15
COPS4-203ENST00000504274 ECM2O94769 699 aaPredicted RBP14.06□□□□□ -0.16
COPS4-203ENST00000504274 CD44P16070 742 aaKnown RBP14.02□□□□□ -0.17
COPS4-203ENST00000504274 C19orf67A6NJJ6 358 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms