RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 A0A0C4DFX4 3053 aa1.84□□□□□ -2.12
BRCA1-220ENST00000492859 C2CD3Q4AC94 2353 aa1.83□□□□□ -2.12
BRCA1-220ENST00000492859 KRTAP10-12P60413 245 aa1.82□□□□□ -2.12
BRCA1-220ENST00000492859 DEFB109BQ30KR1 87 aa1.82□□□□□ -2.12
BRCA1-220ENST00000492859 S4R3F8 94 aa1.81□□□□□ -2.12
BRCA1-220ENST00000492859 SPRR1BP22528 89 aa1.81□□□□□ -2.12
BRCA1-220ENST00000492859 Q5VSD8 79 aa1.81□□□□□ -2.12
BRCA1-220ENST00000492859 MGAQ8IWI9 3026 aa1.8□□□□□ -2.12
BRCA1-220ENST00000492859 SPTBN2O15020 2390 aa1.79□□□□□ -2.12
BRCA1-220ENST00000492859 STATHP02808 62 aa1.79□□□□□ -2.12
BRCA1-220ENST00000492859 KLK9Q2XQG4 91 aa1.79□□□□□ -2.12
BRCA1-220ENST00000492859 WNK1Q9H4A3 2382 aa1.78□□□□□ -2.12
BRCA1-220ENST00000492859 KRTAP9-6A8MVA2 160 aa1.78□□□□□ -2.12
BRCA1-220ENST00000492859 KRTAP12-1P59990 96 aa1.78□□□□□ -2.12
BRCA1-220ENST00000492859 LCE3CQ5T5A8 94 aa1.78□□□□□ -2.12
BRCA1-220ENST00000492859 MUC6Q6W4X9 2439 aa1.78□□□□□ -2.12
BRCA1-220ENST00000492859 CELSR2Q9HCU4 2923 aa1.77□□□□□ -2.13
BRCA1-220ENST00000492859 AKAP6Q13023 2319 aa1.77□□□□□ -2.13
BRCA1-220ENST00000492859 ACACAQ13085 2346 aa1.77□□□□□ -2.13
BRCA1-220ENST00000492859 SPINK1P00995 79 aa1.76□□□□□ -2.13
BRCA1-220ENST00000492859 SPTBN1Q01082 2364 aaKnown RBP1.76□□□□□ -2.13
BRCA1-220ENST00000492859 FBN1P35555 2871 aaKnown RBP1.76□□□□□ -2.13
BRCA1-220ENST00000492859 HIVEP2P31629 2446 aa1.76□□□□□ -2.13
BRCA1-220ENST00000492859 OTOGQ6ZRI0 2925 aa1.75□□□□□ -2.13
BRCA1-220ENST00000492859 APELAP0DMC3 54 aa1.74□□□□□ -2.13
BRCA1-220ENST00000492859 SPTA1P02549 2419 aa1.74□□□□□ -2.13
BRCA1-220ENST00000492859 TRANK1O15050 2925 aa1.73□□□□□ -2.13
BRCA1-220ENST00000492859 ABCA2Q9BZC7 2435 aa1.73□□□□□ -2.13
BRCA1-220ENST00000492859 KRTAP6-3Q3LI67 103 aa1.72□□□□□ -2.13
BRCA1-220ENST00000492859 GVINP1Q7Z2Y8 2422 aa1.72□□□□□ -2.13
BRCA1-220ENST00000492859 TENM2Q9NT68 2774 aa1.72□□□□□ -2.13
BRCA1-220ENST00000492859 ASH1LQ9NR48 2969 aaKnown RBP1.72□□□□□ -2.13
BRCA1-220ENST00000492859 KRTAP10-10P60014 251 aa1.72□□□□□ -2.13
BRCA1-220ENST00000492859 F8P00451 2351 aa1.71□□□□□ -2.14
BRCA1-220ENST00000492859 ABCA12Q86UK0 2595 aa1.71□□□□□ -2.14
BRCA1-220ENST00000492859 PRRC2CQ9Y520 2896 aaKnown RBP1.71□□□□□ -2.14
BRCA1-220ENST00000492859 A0A0D9SG42 100 aa1.7□□□□□ -2.14
BRCA1-220ENST00000492859 SPTBN4Q9H254 2564 aa1.69□□□□□ -2.14
BRCA1-220ENST00000492859 NOTCH2Q04721 2471 aa1.68□□□□□ -2.14
BRCA1-220ENST00000492859 DEFB1P60022 68 aa1.68□□□□□ -2.14
BRCA1-220ENST00000492859 NOP10Q9NPE3 64 aaKnown RBP1.68□□□□□ -2.14
BRCA1-220ENST00000492859 CEP290O15078 2479 aa1.68□□□□□ -2.14
BRCA1-220ENST00000492859 H0YGG7 62 aa1.68□□□□□ -2.14
BRCA1-220ENST00000492859 UBR5O95071 2799 aaPredicted RBP1.67□□□□□ -2.14
BRCA1-220ENST00000492859 SRRM2Q9UQ35 2752 aaKnown RBP1.67□□□□□ -2.14
BRCA1-220ENST00000492859 DEFB119Q8N690 84 aa1.67□□□□□ -2.14
BRCA1-220ENST00000492859 CACNA1HO95180 2353 aa1.66□□□□□ -2.14
BRCA1-220ENST00000492859 ZNF292O60281 2723 aa1.66□□□□□ -2.14
BRCA1-220ENST00000492859 VWFP04275 2813 aa1.64□□□□□ -2.15
BRCA1-220ENST00000492859 KRTAP12-4P60329 112 aa1.64□□□□□ -2.15
BRCA1-220ENST00000492859 COX14Q96I36 57 aa1.64□□□□□ -2.15
BRCA1-220ENST00000492859 LCE3EQ5T5B0 92 aa1.64□□□□□ -2.15
BRCA1-220ENST00000492859 PKD1L2Q7Z442 2459 aa1.63□□□□□ -2.15
BRCA1-220ENST00000492859 EP300Q09472 2414 aaPredicted RBP1.63□□□□□ -2.15
BRCA1-220ENST00000492859 MEGF8Q7Z7M0 2845 aa1.63□□□□□ -2.15
BRCA1-220ENST00000492859 AKAP13Q12802 2813 aa1.62□□□□□ -2.15
BRCA1-220ENST00000492859 TTC28Q96AY4 2481 aa1.62□□□□□ -2.15
BRCA1-220ENST00000492859 CELSR1Q9NYQ6 3014 aa1.62□□□□□ -2.15
BRCA1-220ENST00000492859 KRTAP13-1Q8IUC0 172 aa1.61□□□□□ -2.15
BRCA1-220ENST00000492859 TNRC18O15417 2968 aaPredicted RBP1.61□□□□□ -2.15
BRCA1-220ENST00000492859 CCDC168Q8NDH2 2452 aa1.61□□□□□ -2.15
BRCA1-220ENST00000492859 COL6A3P12111 3177 aa1.61□□□□□ -2.15
BRCA1-220ENST00000492859 COL6A5A8TX70 2615 aa1.6□□□□□ -2.15
BRCA1-220ENST00000492859 CHD6Q8TD26 2715 aa1.59□□□□□ -2.15
BRCA1-220ENST00000492859 NAV2Q8IVL1 2488 aa1.59□□□□□ -2.15
BRCA1-220ENST00000492859 CRYBG3Q68DQ2 2970 aa1.59□□□□□ -2.15
BRCA1-220ENST00000492859 CREBBPQ92793 2442 aa1.59□□□□□ -2.15
BRCA1-220ENST00000492859 RHPN1-AS1Q9BWJ2 59 aa1.59□□□□□ -2.16
BRCA1-220ENST00000492859 CEP250Q9BV73 2442 aa1.57□□□□□ -2.16
BRCA1-220ENST00000492859 HTN1P15515 57 aa1.57□□□□□ -2.16
BRCA1-220ENST00000492859 WDR87Q6ZQQ6 2873 aa1.57□□□□□ -2.16
BRCA1-220ENST00000492859 RP1L1Q8IWN7 2480 aaPredicted RBP1.57□□□□□ -2.16
BRCA1-220ENST00000492859 DMBT1Q9UGM3 2413 aaPredicted RBP1.56□□□□□ -2.16
BRCA1-220ENST00000492859 POLQO75417 2590 aa1.56□□□□□ -2.16
BRCA1-220ENST00000492859 SETD2Q9BYW2 2564 aaPredicted RBP1.56□□□□□ -2.16
BRCA1-220ENST00000492859 NCOR1O75376 2440 aa1.55□□□□□ -2.16
BRCA1-220ENST00000492859 HECTD1Q9ULT8 2610 aa1.55□□□□□ -2.16
BRCA1-220ENST00000492859 H3BUX3 64 aa1.55□□□□□ -2.16
BRCA1-220ENST00000492859 M0QZ58 72 aa1.54□□□□□ -2.16
BRCA1-220ENST00000492859 CHD9Q3L8U1 2897 aa1.54□□□□□ -2.16
BRCA1-220ENST00000492859 RANBP2P49792 3224 aaKnown RBP1.53□□□□□ -2.16
BRCA1-220ENST00000492859 DEFB136Q30KP8 78 aa1.52□□□□□ -2.17
BRCA1-220ENST00000492859 DEFB110Q30KQ9 67 aa1.52□□□□□ -2.17
BRCA1-220ENST00000492859 DEFB108BQ8NET1 73 aa1.51□□□□□ -2.17
BRCA1-220ENST00000492859 ATRQ13535 2644 aa1.51□□□□□ -2.17
BRCA1-220ENST00000492859 APC2O95996 2303 aa1.51□□□□□ -2.17
BRCA1-220ENST00000492859 LCE3AQ5TA76 89 aa1.51□□□□□ -2.17
BRCA1-220ENST00000492859 NBASA2RRP1 2371 aa1.5□□□□□ -2.17
BRCA1-220ENST00000492859 LCE3DQ9BYE3 92 aa1.48□□□□□ -2.17
BRCA1-220ENST00000492859 MAP1BP46821 2468 aaKnown RBP1.48□□□□□ -2.17
BRCA1-220ENST00000492859 PDZD2O15018 2839 aa1.48□□□□□ -2.17
BRCA1-220ENST00000492859 A0A096LNI7 61 aa1.47□□□□□ -2.17
BRCA1-220ENST00000492859 CEP350Q5VT06 3117 aa1.47□□□□□ -2.17
BRCA1-220ENST00000492859 NBEAQ8NFP9 2946 aa1.47□□□□□ -2.17
BRCA1-220ENST00000492859 CFAP54Q96N23 3096 aa1.47□□□□□ -2.17
BRCA1-220ENST00000492859 SPINK6Q6UWN8 80 aa1.47□□□□□ -2.17
BRCA1-220ENST00000492859 FRYQ5TBA9 3013 aa1.46□□□□□ -2.18
BRCA1-220ENST00000492859 PIEZO1Q92508 2521 aa1.46□□□□□ -2.18
BRCA1-220ENST00000492859 DCHS2Q6V1P9 2916 aa1.46□□□□□ -2.18
BRCA1-220ENST00000492859 J3QKU1 62 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms