RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 A8MUU9 505 aa3.28□□□□□ -1.88
USF3-202ENST00000478658 KRTAP10-9P60411 292 aa3.28□□□□□ -1.88
USF3-202ENST00000478658 Q5VV11 94 aa3.28□□□□□ -1.88
USF3-202ENST00000478658 GIG44P09565 113 aaPredicted RBP3.28□□□□□ -1.88
USF3-202ENST00000478658 CRIP3Q6Q6R5 217 aa3.28□□□□□ -1.88
USF3-202ENST00000478658 USP9YO00507 2555 aaPredicted RBP3.28□□□□□ -1.88
USF3-202ENST00000478658 IGF2RP11717 2491 aa3.27□□□□□ -1.89
USF3-202ENST00000478658 NOTCH1P46531 2555 aa3.26□□□□□ -1.89
USF3-202ENST00000478658 CFAP46Q8IYW2 2715 aa3.26□□□□□ -1.89
USF3-202ENST00000478658 KRTAP10-11P60412 298 aa3.26□□□□□ -1.89
USF3-202ENST00000478658 C10orf95Q9H7T3 257 aa3.24□□□□□ -1.89
USF3-202ENST00000478658 LCE6AA0A183 80 aa3.23□□□□□ -1.89
USF3-202ENST00000478658 LINC00472Q9H8W2 130 aa3.23□□□□□ -1.89
USF3-202ENST00000478658 NBEAL1Q6ZS30 2694 aa3.23□□□□□ -1.89
USF3-202ENST00000478658 A8MU10 97 aa3.22□□□□□ -1.89
USF3-202ENST00000478658 SPRR1AP35321 89 aa3.21□□□□□ -1.89
USF3-202ENST00000478658 Q5XG85 94 aa3.21□□□□□ -1.9
USF3-202ENST00000478658 PRAC1Q96KF2 57 aa3.19□□□□□ -1.9
USF3-202ENST00000478658 A0A096LNT2 108 aa3.19□□□□□ -1.9
USF3-202ENST00000478658 CEP295Q9C0D2 2601 aa3.17□□□□□ -1.9
USF3-202ENST00000478658 MAST4O15021 2626 aa3.16□□□□□ -1.9
USF3-202ENST00000478658 A0A0G2JQZ4 141 aa3.16□□□□□ -1.9
USF3-202ENST00000478658 HECTD1Q9ULT8 2610 aa3.16□□□□□ -1.9
USF3-202ENST00000478658 BAHCC1Q9P281 2608 aa3.15□□□□□ -1.9
USF3-202ENST00000478658 BPTFQ12830 3046 aa3.14□□□□□ -1.91
USF3-202ENST00000478658 STAB2Q8WWQ8 2551 aa3.13□□□□□ -1.91
USF3-202ENST00000478658 KRTAP26-1Q6PEX3 210 aa3.12□□□□□ -1.91
USF3-202ENST00000478658 UNC79Q9P2D8 2635 aa3.12□□□□□ -1.91
USF3-202ENST00000478658 WDR87Q6ZQQ6 2873 aa3.12□□□□□ -1.91
USF3-202ENST00000478658 KRTAP10-8P60410 259 aa3.09□□□□□ -1.92
USF3-202ENST00000478658 A6NN06 94 aa3.07□□□□□ -1.92
USF3-202ENST00000478658 KRTAP21-3Q3LHN1 58 aa3.05□□□□□ -1.92
USF3-202ENST00000478658 Q6ZRN7 208 aaPredicted RBP3.05□□□□□ -1.92
USF3-202ENST00000478658 KRTAP11-1Q8IUC1 163 aa3.05□□□□□ -1.92
USF3-202ENST00000478658 CHD6Q8TD26 2715 aa3.04□□□□□ -1.92
USF3-202ENST00000478658 KRTAP4-16G5E9R7 235 aaPredicted RBP3.04□□□□□ -1.92
USF3-202ENST00000478658 INE1O15225 51 aa3.04□□□□□ -1.92
USF3-202ENST00000478658 FLNAP21333 2647 aaKnown RBP3.02□□□□□ -1.93
USF3-202ENST00000478658 ATRQ13535 2644 aa3.01□□□□□ -1.93
USF3-202ENST00000478658 KRTAP29-1A8MX34 341 aaPredicted RBP3□□□□□ -1.93
USF3-202ENST00000478658 KRTAP10-1P60331 282 aa3□□□□□ -1.93
USF3-202ENST00000478658 HELZ2Q9BYK8 2649 aaKnown RBP2.99□□□□□ -1.93
USF3-202ENST00000478658 TPRXLQ17RH7 258 aa2.99□□□□□ -1.93
USF3-202ENST00000478658 IGSF10Q6WRI0 2623 aa2.99□□□□□ -1.93
USF3-202ENST00000478658 KRTAP10-3P60369 221 aa2.99□□□□□ -1.93
USF3-202ENST00000478658 AKAP13Q12802 2813 aa2.98□□□□□ -1.93
USF3-202ENST00000478658 ITPR3Q14573 2671 aa2.97□□□□□ -1.93
USF3-202ENST00000478658 KRTAP10-10P60014 251 aa2.94□□□□□ -1.94
USF3-202ENST00000478658 TEP1Q99973 2627 aaKnown RBP2.94□□□□□ -1.94
USF3-202ENST00000478658 COL6A5A8TX70 2615 aa2.93□□□□□ -1.94
USF3-202ENST00000478658 FLNBO75369 2602 aaKnown RBP2.93□□□□□ -1.94
USF3-202ENST00000478658 ITPR2Q14571 2701 aa2.92□□□□□ -1.94
USF3-202ENST00000478658 PRRC2CQ9Y520 2896 aaKnown RBP2.92□□□□□ -1.94
USF3-202ENST00000478658 KRTAP10-2P60368 255 aa2.9□□□□□ -1.94
USF3-202ENST00000478658 CYSTM1Q9H1C7 97 aa2.89□□□□□ -1.95
USF3-202ENST00000478658 KRTAP1-3Q8IUG1 177 aa2.88□□□□□ -1.95
USF3-202ENST00000478658 KRTAP1-1Q07627 177 aa2.88□□□□□ -1.95
USF3-202ENST00000478658 TEX15Q9BXT5 2789 aa2.86□□□□□ -1.95
USF3-202ENST00000478658 H0YAA0 97 aa2.85□□□□□ -1.95
USF3-202ENST00000478658 KRTAP13-4Q3LI77 160 aa2.85□□□□□ -1.95
USF3-202ENST00000478658 SETXQ7Z333 2677 aaKnown RBP2.85□□□□□ -1.95
USF3-202ENST00000478658 KRTAP13-2Q52LG2 175 aa2.85□□□□□ -1.95
USF3-202ENST00000478658 NSD1Q96L73 2696 aaPredicted RBP2.84□□□□□ -1.95
USF3-202ENST00000478658 GCN1Q92616 2671 aaKnown RBP2.83□□□□□ -1.96
USF3-202ENST00000478658 XP32Q5T750 250 aa2.82□□□□□ -1.96
USF3-202ENST00000478658 KRTAP1-5Q9BYS1 174 aa2.81□□□□□ -1.96
USF3-202ENST00000478658 KRTAP12-2P59991 146 aa2.81□□□□□ -1.96
USF3-202ENST00000478658 TENM3Q9P273 2699 aa2.8□□□□□ -1.96
USF3-202ENST00000478658 KRTAP15-1Q3LI76 137 aa2.79□□□□□ -1.96
USF3-202ENST00000478658 KRTAP13-1Q8IUC0 172 aa2.79□□□□□ -1.96
USF3-202ENST00000478658 APCP25054 2843 aa2.78□□□□□ -1.97
USF3-202ENST00000478658 KRTAP23-1A1A580 65 aa2.77□□□□□ -1.97
USF3-202ENST00000478658 KRTAP10-6P60371 365 aaPredicted RBP2.75□□□□□ -1.97
USF3-202ENST00000478658 MAP1AP78559 2803 aaPredicted RBP2.72□□□□□ -1.97
USF3-202ENST00000478658 ZNF292O60281 2723 aa2.7□□□□□ -1.98
USF3-202ENST00000478658 KRTAP13-3Q3SY46 172 aa2.69□□□□□ -1.98
USF3-202ENST00000478658 A0A1B0GVY2 172 aa2.69□□□□□ -1.98
USF3-202ENST00000478658 UBR5O95071 2799 aaPredicted RBP2.64□□□□□ -1.99
USF3-202ENST00000478658 TRIOO75962 3097 aa2.61□□□□□ -1.99
USF3-202ENST00000478658 UTP20O75691 2785 aaKnown RBP2.61□□□□□ -1.99
USF3-202ENST00000478658 MT3P25713 68 aa2.61□□□□□ -1.99
USF3-202ENST00000478658 KRTAP19-4Q3LI73 84 aa2.6□□□□□ -1.99
USF3-202ENST00000478658 KRTAP10-12P60413 245 aa2.6□□□□□ -1.99
USF3-202ENST00000478658 KRTAP1-4P0C5Y4 121 aa2.58□□□□□ -2
USF3-202ENST00000478658 TENM1Q9UKZ4 2725 aa2.57□□□□□ -2
USF3-202ENST00000478658 KRTAP12-1P59990 96 aa2.54□□□□□ -2
USF3-202ENST00000478658 TGP01266 2768 aa2.52□□□□□ -2.01
USF3-202ENST00000478658 KRTAP7-1Q8IUC3 87 aa2.48□□□□□ -2.01
USF3-202ENST00000478658 SRCAPQ6ZRS2 3230 aa2.48□□□□□ -2.01
USF3-202ENST00000478658 TENM2Q9NT68 2774 aa2.47□□□□□ -2.01
USF3-202ENST00000478658 KRTAP10-7P60409 375 aaPredicted RBP2.46□□□□□ -2.02
USF3-202ENST00000478658 KRTAP12-3P60328 96 aa2.46□□□□□ -2.02
USF3-202ENST00000478658 ITPR1Q14643 2758 aa2.44□□□□□ -2.02
USF3-202ENST00000478658 KALRNO60229 2985 aa2.43□□□□□ -2.02
USF3-202ENST00000478658 FLNCQ14315 2725 aa2.42□□□□□ -2.02
USF3-202ENST00000478658 PDZD2O15018 2839 aa2.42□□□□□ -2.02
USF3-202ENST00000478658 NBEAL2Q6ZNJ1 2754 aa2.42□□□□□ -2.02
USF3-202ENST00000478658 CRCT1Q9UGL9 99 aa2.4□□□□□ -2.03
USF3-202ENST00000478658 KRTAP8-1Q8IUC2 63 aa2.4□□□□□ -2.03
USF3-202ENST00000478658 CHD9Q3L8U1 2897 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms