RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 SPRR1AP35321 89 aa4.8□□□□□ -1.64
SYNE1-210ENST00000409694 MGAM2Q2M2H8 2515 aa4.79□□□□□ -1.64
SYNE1-210ENST00000409694 KRTAP10-3P60369 221 aa4.79□□□□□ -1.64
SYNE1-210ENST00000409694 STAB1Q9NY15 2570 aa4.79□□□□□ -1.64
SYNE1-210ENST00000409694 ADM2Q7Z4H4 148 aa4.79□□□□□ -1.64
SYNE1-210ENST00000409694 Q6ZR54 194 aa4.78□□□□□ -1.64
SYNE1-210ENST00000409694 SRCAPQ6ZRS2 3230 aa4.78□□□□□ -1.64
SYNE1-210ENST00000409694 PCNTO95613 3336 aa4.77□□□□□ -1.65
SYNE1-210ENST00000409694 CFAP46Q8IYW2 2715 aa4.77□□□□□ -1.65
SYNE1-210ENST00000409694 A0A096LNT2 108 aa4.77□□□□□ -1.65
SYNE1-210ENST00000409694 OXTP01178 125 aa4.77□□□□□ -1.65
SYNE1-210ENST00000409694 FLNAP21333 2647 aaKnown RBP4.77□□□□□ -1.65
SYNE1-210ENST00000409694 C20orf166-AS1Q96NR2 134 aa4.77□□□□□ -1.65
SYNE1-210ENST00000409694 UTRNP46939 3433 aa4.76□□□□□ -1.65
SYNE1-210ENST00000409694 PANO1I0J062 215 aa4.76□□□□□ -1.65
SYNE1-210ENST00000409694 CENPEQ02224 2701 aa4.74□□□□□ -1.65
SYNE1-210ENST00000409694 KRTAP25-1Q3LHN0 102 aa4.74□□□□□ -1.65
SYNE1-210ENST00000409694 SPATA8Q6RVD6 105 aa4.73□□□□□ -1.65
SYNE1-210ENST00000409694 KRTAP26-1Q6PEX3 210 aa4.72□□□□□ -1.65
SYNE1-210ENST00000409694 Q5VSD8 79 aa4.72□□□□□ -1.65
SYNE1-210ENST00000409694 ITPR3Q14573 2671 aa4.71□□□□□ -1.66
SYNE1-210ENST00000409694 Q8NDZ9 215 aa4.71□□□□□ -1.66
SYNE1-210ENST00000409694 DMBT1Q9UGM3 2413 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-210ENST00000409694 GOLGB1Q14789 3259 aaKnown RBP4.68□□□□□ -1.66
SYNE1-210ENST00000409694 RPS29P62273 56 aaKnown RBP4.68□□□□□ -1.66
SYNE1-210ENST00000409694 CYSTM1Q9H1C7 97 aa4.68□□□□□ -1.66
SYNE1-210ENST00000409694 A0A087X002 238 aa4.68□□□□□ -1.66
SYNE1-210ENST00000409694 AKAP13Q12802 2813 aa4.67□□□□□ -1.66
SYNE1-210ENST00000409694 NBEAL1Q6ZS30 2694 aa4.67□□□□□ -1.66
SYNE1-210ENST00000409694 GCN1Q92616 2671 aaKnown RBP4.64□□□□□ -1.67
SYNE1-210ENST00000409694 A6NN06 94 aa4.63□□□□□ -1.67
SYNE1-210ENST00000409694 A8MUU9 505 aa4.63□□□□□ -1.67
SYNE1-210ENST00000409694 TNP1P09430 55 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 NDUFAF8A1L188 74 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 PP632Q6XCG6 107 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 KRTAP1-3Q8IUG1 177 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 CENPFP49454 3210 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 EP400Q96L91 3159 aa4.61□□□□□ -1.67
SYNE1-210ENST00000409694 UNC79Q9P2D8 2635 aa4.59□□□□□ -1.67
SYNE1-210ENST00000409694 KRTAP1-1Q07627 177 aa4.58□□□□□ -1.68
SYNE1-210ENST00000409694 SETXQ7Z333 2677 aaKnown RBP4.58□□□□□ -1.68
SYNE1-210ENST00000409694 KRTAP29-1A8MX34 341 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-210ENST00000409694 C10orf95Q9H7T3 257 aa4.57□□□□□ -1.68
SYNE1-210ENST00000409694 DNAH12Q6ZR08 3092 aa4.57□□□□□ -1.68
SYNE1-210ENST00000409694 REV3LO60673 3130 aa4.56□□□□□ -1.68
SYNE1-210ENST00000409694 NOTCH1P46531 2555 aa4.56□□□□□ -1.68
SYNE1-210ENST00000409694 TEX15Q9BXT5 2789 aa4.56□□□□□ -1.68
SYNE1-210ENST00000409694 TEP1Q99973 2627 aaKnown RBP4.56□□□□□ -1.68
SYNE1-210ENST00000409694 LCE6AA0A183 80 aa4.56□□□□□ -1.68
SYNE1-210ENST00000409694 KRTAP10-1P60331 282 aa4.53□□□□□ -1.69
SYNE1-210ENST00000409694 KRTAP4-16G5E9R7 235 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-210ENST00000409694 ITPR2Q14571 2701 aa4.52□□□□□ -1.69
SYNE1-210ENST00000409694 COL6A5A8TX70 2615 aa4.52□□□□□ -1.69
SYNE1-210ENST00000409694 ZNF292O60281 2723 aa4.52□□□□□ -1.69
SYNE1-210ENST00000409694 BAHCC1Q9P281 2608 aa4.5□□□□□ -1.69
SYNE1-210ENST00000409694 A8MU10 97 aa4.48□□□□□ -1.69
SYNE1-210ENST00000409694 LAMA2P24043 3122 aaKnown RBP4.48□□□□□ -1.69
SYNE1-210ENST00000409694 STAB2Q8WWQ8 2551 aa4.48□□□□□ -1.69
SYNE1-210ENST00000409694 KRTAP1-5Q9BYS1 174 aa4.48□□□□□ -1.69
SYNE1-210ENST00000409694 C5orf42Q9H799 3197 aa4.47□□□□□ -1.69
SYNE1-210ENST00000409694 KRTAP10-2P60368 255 aa4.47□□□□□ -1.69
SYNE1-210ENST00000409694 NSD1Q96L73 2696 aaPredicted RBP4.46□□□□□ -1.69
SYNE1-210ENST00000409694 NOTCH2NLQ7Z3S9 236 aa4.46□□□□□ -1.7
SYNE1-210ENST00000409694 CHD6Q8TD26 2715 aa4.46□□□□□ -1.7
SYNE1-210ENST00000409694 KRTAP11-1Q8IUC1 163 aa4.45□□□□□ -1.7
SYNE1-210ENST00000409694 A0A0C4DFX4 3053 aa4.44□□□□□ -1.7
SYNE1-210ENST00000409694 P0C880 135 aa4.41□□□□□ -1.7
SYNE1-210ENST00000409694 Q6ZRN7 208 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-210ENST00000409694 PRO2289Q9P1D8 64 aa4.39□□□□□ -1.71
SYNE1-210ENST00000409694 XIRP2A4UGR9 3374 aa4.39□□□□□ -1.71
SYNE1-210ENST00000409694 CEP350Q5VT06 3117 aa4.38□□□□□ -1.71
SYNE1-210ENST00000409694 MAP1AP78559 2803 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-210ENST00000409694 UTP20O75691 2785 aaKnown RBP4.34□□□□□ -1.71
SYNE1-210ENST00000409694 KRTAP10-8P60410 259 aa4.32□□□□□ -1.72
SYNE1-210ENST00000409694 DNAH14Q0VDD8 3507 aa4.31□□□□□ -1.72
SYNE1-210ENST00000409694 IGSF10Q6WRI0 2623 aa4.3□□□□□ -1.72
SYNE1-210ENST00000409694 KRTAP13-1Q8IUC0 172 aa4.29□□□□□ -1.72
SYNE1-210ENST00000409694 KRTAP13-2Q52LG2 175 aa4.28□□□□□ -1.72
SYNE1-210ENST00000409694 APCP25054 2843 aa4.28□□□□□ -1.72
SYNE1-210ENST00000409694 CFAP54Q96N23 3096 aa4.26□□□□□ -1.73
SYNE1-210ENST00000409694 MGAQ8IWI9 3026 aa4.26□□□□□ -1.73
SYNE1-210ENST00000409694 TRANK1O15050 2925 aa4.25□□□□□ -1.73
SYNE1-210ENST00000409694 RANBP2P49792 3224 aaKnown RBP4.24□□□□□ -1.73
SYNE1-210ENST00000409694 H0YAA0 97 aa4.21□□□□□ -1.73
SYNE1-210ENST00000409694 BRCA2P51587 3418 aa4.21□□□□□ -1.74
SYNE1-210ENST00000409694 UBR5O95071 2799 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-210ENST00000409694 FLNCQ14315 2725 aa4.2□□□□□ -1.74
SYNE1-210ENST00000409694 KRTAP21-3Q3LHN1 58 aa4.19□□□□□ -1.74
SYNE1-210ENST00000409694 VPS13AQ96RL7 3174 aa4.19□□□□□ -1.74
SYNE1-210ENST00000409694 USP34Q70CQ2 3546 aa4.18□□□□□ -1.74
SYNE1-210ENST00000409694 CELSR3Q9NYQ7 3312 aa4.18□□□□□ -1.74
SYNE1-210ENST00000409694 TPRXLQ17RH7 258 aa4.17□□□□□ -1.74
SYNE1-210ENST00000409694 MKI67P46013 3256 aaKnown RBP4.17□□□□□ -1.74
SYNE1-210ENST00000409694 XP32Q5T750 250 aa4.17□□□□□ -1.74
SYNE1-210ENST00000409694 NIPBLQ6KC79 2804 aaeCLIP4.15□□□□□ -1.75
SYNE1-210ENST00000409694 KRTAP7-1Q8IUC3 87 aa4.15□□□□□ -1.75
SYNE1-210ENST00000409694 UNC80Q8N2C7 3258 aa4.15□□□□□ -1.75
SYNE1-210ENST00000409694 DSPP15924 2871 aaKnown RBP4.14□□□□□ -1.75
SYNE1-210ENST00000409694 ITPR1Q14643 2758 aa4.13□□□□□ -1.75
SYNE1-210ENST00000409694 CDH23Q9H251 3354 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 353.1 ms