RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 Q75L30 129 aa8.01□□□□□ -1.13
VPS13A-204ENST00000376634 EIF4EBP3O60516 100 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-204ENST00000376634 ITPR1Q14643 2758 aa7.99□□□□□ -1.13
VPS13A-204ENST00000376634 MGAQ8IWI9 3026 aa7.99□□□□□ -1.13
VPS13A-204ENST00000376634 PRR26Q8N8Z3 221 aa7.99□□□□□ -1.13
VPS13A-204ENST00000376634 HRES1P13985 223 aa7.97□□□□□ -1.13
VPS13A-204ENST00000376634 DSPP15924 2871 aaKnown RBP7.97□□□□□ -1.13
VPS13A-204ENST00000376634 GIG44P09565 113 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-204ENST00000376634 LINC00612Q8N6U2 182 aa7.96□□□□□ -1.14
VPS13A-204ENST00000376634 DMAC1Q96GE9 116 aa7.96□□□□□ -1.14
VPS13A-204ENST00000376634 OCR1Q9BZK8 76 aa7.95□□□□□ -1.14
VPS13A-204ENST00000376634 UBR5O95071 2799 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-204ENST00000376634 IGLV7-46A0A075B6I9 117 aa7.93□□□□□ -1.14
VPS13A-204ENST00000376634 S4R3F8 94 aa7.93□□□□□ -1.14
VPS13A-204ENST00000376634 A0A1W2PNM2 257 aa7.93□□□□□ -1.14
VPS13A-204ENST00000376634 WIPF1O43516 503 aa7.93□□□□□ -1.14
VPS13A-204ENST00000376634 CASC10Q5T4H9 136 aa7.89□□□□□ -1.15
VPS13A-204ENST00000376634 FAM229BQ4G0N7 80 aa7.86□□□□□ -1.15
VPS13A-204ENST00000376634 TRIOO75962 3097 aa7.86□□□□□ -1.15
VPS13A-204ENST00000376634 KRTAP10-3P60369 221 aa7.85□□□□□ -1.15
VPS13A-204ENST00000376634 CSAG1Q6PB30 78 aa7.85□□□□□ -1.15
VPS13A-204ENST00000376634 SPINK7P58062 85 aa7.84□□□□□ -1.15
VPS13A-204ENST00000376634 LRBAP50851 2863 aa7.84□□□□□ -1.15
VPS13A-204ENST00000376634 FRYQ5TBA9 3013 aa7.82□□□□□ -1.16
VPS13A-204ENST00000376634 VPS13AQ96RL7 3174 aa7.82□□□□□ -1.16
VPS13A-204ENST00000376634 A0A096LNT2 108 aa7.81□□□□□ -1.16
VPS13A-204ENST00000376634 FRYLO94915 3013 aa7.81□□□□□ -1.16
VPS13A-204ENST00000376634 ZCCHC13Q8WW36 166 aaKnown RBP7.81□□□□□ -1.16
VPS13A-204ENST00000376634 FLNCQ14315 2725 aa7.8□□□□□ -1.16
VPS13A-204ENST00000376634 PRAC1Q96KF2 57 aa7.8□□□□□ -1.16
VPS13A-204ENST00000376634 CHD9Q3L8U1 2897 aa7.79□□□□□ -1.16
VPS13A-204ENST00000376634 R4GN34 69 aa7.79□□□□□ -1.16
VPS13A-204ENST00000376634 LINC01558Q9Y6Z2 57 aa7.76□□□□□ -1.17
VPS13A-204ENST00000376634 TNP2Q05952 138 aa7.76□□□□□ -1.17
VPS13A-204ENST00000376634 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.76□□□□□ -1.17
VPS13A-204ENST00000376634 Q8N9P0 234 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-204ENST00000376634 CHD7Q9P2D1 2997 aa7.74□□□□□ -1.17
VPS13A-204ENST00000376634 Q5VV11 94 aa7.73□□□□□ -1.17
VPS13A-204ENST00000376634 TENM1Q9UKZ4 2725 aa7.72□□□□□ -1.17
VPS13A-204ENST00000376634 ROMO1P60602 79 aa7.72□□□□□ -1.17
VPS13A-204ENST00000376634 KALRNO60229 2985 aa7.72□□□□□ -1.17
VPS13A-204ENST00000376634 Q5XG85 94 aa7.71□□□□□ -1.17
VPS13A-204ENST00000376634 HIVEP1P15822 2718 aa7.71□□□□□ -1.18
VPS13A-204ENST00000376634 NF1P21359 2839 aa7.69□□□□□ -1.18
VPS13A-204ENST00000376634 Q5W150 140 aa7.69□□□□□ -1.18
VPS13A-204ENST00000376634 SEC61BP60468 96 aaKnown RBP7.68□□□□□ -1.18
VPS13A-204ENST00000376634 XIRP2A4UGR9 3374 aa7.68□□□□□ -1.18
VPS13A-204ENST00000376634 CRYBG3Q68DQ2 2970 aa7.68□□□□□ -1.18
VPS13A-204ENST00000376634 ASH1LQ9NR48 2969 aaKnown RBP7.68□□□□□ -1.18
VPS13A-204ENST00000376634 PRUNE2Q8WUY3 3088 aa7.68□□□□□ -1.18
VPS13A-204ENST00000376634 MMP24-AS1A0A0U1RRL7 71 aa7.68□□□□□ -1.18
VPS13A-204ENST00000376634 H1FX-AS1Q4G0G2 97 aa7.66□□□□□ -1.18
VPS13A-204ENST00000376634 PLAC8Q9NZF1 115 aa7.66□□□□□ -1.18
VPS13A-204ENST00000376634 FP248Q71RG6 208 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-204ENST00000376634 RPL37P61927 97 aaKnown RBP7.64□□□□□ -1.19
VPS13A-204ENST00000376634 WDFY4Q6ZS81 3184 aa7.63□□□□□ -1.19
VPS13A-204ENST00000376634 KRTAP1-3Q8IUG1 177 aa7.62□□□□□ -1.19
VPS13A-204ENST00000376634 PLAC4Q8WY50 150 aa7.61□□□□□ -1.19
VPS13A-204ENST00000376634 M0QZ58 72 aa7.61□□□□□ -1.19
VPS13A-204ENST00000376634 TACC2O95359 2948 aa7.59□□□□□ -1.19
VPS13A-204ENST00000376634 CELSR2Q9HCU4 2923 aa7.58□□□□□ -1.2
VPS13A-204ENST00000376634 KRTAP1-1Q07627 177 aa7.58□□□□□ -1.2
VPS13A-204ENST00000376634 Q5VSD8 79 aa7.57□□□□□ -1.2
VPS13A-204ENST00000376634 LINC00472Q9H8W2 130 aa7.56□□□□□ -1.2
VPS13A-204ENST00000376634 KRTAP16-1A8MUX0 517 aa7.56□□□□□ -1.2
VPS13A-204ENST00000376634 FREM2Q5SZK8 3169 aa7.55□□□□□ -1.2
VPS13A-204ENST00000376634 CYSTM1Q9H1C7 97 aa7.55□□□□□ -1.2
VPS13A-204ENST00000376634 ASB16-AS1Q495Z4 193 aa7.54□□□□□ -1.2
VPS13A-204ENST00000376634 MKI67P46013 3256 aaKnown RBP7.53□□□□□ -1.2
VPS13A-204ENST00000376634 COL12A1Q99715 3063 aa7.53□□□□□ -1.2
VPS13A-204ENST00000376634 NIPBLQ6KC79 2804 aaeCLIP7.52□□□□□ -1.2
VPS13A-204ENST00000376634 DMXL2Q8TDJ6 3036 aa7.52□□□□□ -1.2
VPS13A-204ENST00000376634 SPRR1AP35321 89 aa7.52□□□□□ -1.21
VPS13A-204ENST00000376634 TNRC18O15417 2968 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-204ENST00000376634 ADM2Q7Z4H4 148 aa7.51□□□□□ -1.21
VPS13A-204ENST00000376634 TENM3Q9P273 2699 aa7.5□□□□□ -1.21
VPS13A-204ENST00000376634 RANBP2P49792 3224 aaKnown RBP7.49□□□□□ -1.21
VPS13A-204ENST00000376634 ZZEF1O43149 2961 aa7.46□□□□□ -1.21
VPS13A-204ENST00000376634 SPRR1BP22528 89 aa7.45□□□□□ -1.22
VPS13A-204ENST00000376634 Q8NDZ9 215 aa7.44□□□□□ -1.22
VPS13A-204ENST00000376634 PANO1I0J062 215 aa7.43□□□□□ -1.22
VPS13A-204ENST00000376634 HTTP42858 3142 aa7.43□□□□□ -1.22
VPS13A-204ENST00000376634 NBEAQ8NFP9 2946 aa7.42□□□□□ -1.22
VPS13A-204ENST00000376634 CELSR3Q9NYQ7 3312 aa7.42□□□□□ -1.22
VPS13A-204ENST00000376634 SPATA8Q6RVD6 105 aa7.41□□□□□ -1.22
VPS13A-204ENST00000376634 KRTAP26-1Q6PEX3 210 aa7.41□□□□□ -1.22
VPS13A-204ENST00000376634 Q6ZR54 194 aa7.4□□□□□ -1.22
VPS13A-204ENST00000376634 LAMA1P25391 3075 aa7.38□□□□□ -1.23
VPS13A-204ENST00000376634 OXTP01178 125 aa7.38□□□□□ -1.23
VPS13A-204ENST00000376634 USP34Q70CQ2 3546 aa7.38□□□□□ -1.23
VPS13A-204ENST00000376634 C20orf166-AS1Q96NR2 134 aa7.36□□□□□ -1.23
VPS13A-204ENST00000376634 KRTAP1-5Q9BYS1 174 aa7.36□□□□□ -1.23
VPS13A-204ENST00000376634 PDZD2O15018 2839 aa7.36□□□□□ -1.23
VPS13A-204ENST00000376634 KRTAP10-1P60331 282 aa7.35□□□□□ -1.23
VPS13A-204ENST00000376634 LAMA3Q16787 3333 aa7.34□□□□□ -1.23
VPS13A-204ENST00000376634 REV3LO60673 3130 aa7.34□□□□□ -1.23
VPS13A-204ENST00000376634 DCHS2Q6V1P9 2916 aa7.32□□□□□ -1.24
VPS13A-204ENST00000376634 LCE6AA0A183 80 aa7.32□□□□□ -1.24
VPS13A-204ENST00000376634 ZANQ9Y493 2812 aa7.32□□□□□ -1.24
VPS13A-204ENST00000376634 COL6A3P12111 3177 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms