RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TEP1Q99973 2627 aaKnown RBP2.89□□□□□ -1.95
SCN1A-202ENST00000375405 NDUFAF8A1L188 74 aa2.89□□□□□ -1.95
SCN1A-202ENST00000375405 UTRNP46939 3433 aa2.89□□□□□ -1.95
SCN1A-202ENST00000375405 SPANXA2-OT1Q8N9U9 137 aa2.88□□□□□ -1.95
SCN1A-202ENST00000375405 SPRR1BP22528 89 aa2.88□□□□□ -1.95
SCN1A-202ENST00000375405 LINC01558Q9Y6Z2 57 aa2.88□□□□□ -1.95
SCN1A-202ENST00000375405 FAM229BQ4G0N7 80 aa2.88□□□□□ -1.95
SCN1A-202ENST00000375405 KRTAP10-8P60410 259 aa2.87□□□□□ -1.95
SCN1A-202ENST00000375405 Q5W150 140 aa2.87□□□□□ -1.95
SCN1A-202ENST00000375405 NBEAL1Q6ZS30 2694 aa2.87□□□□□ -1.95
SCN1A-202ENST00000375405 TNP1P09430 55 aa2.86□□□□□ -1.95
SCN1A-202ENST00000375405 A8MUU9 505 aa2.86□□□□□ -1.95
SCN1A-202ENST00000375405 PRR34Q9NV39 138 aa2.86□□□□□ -1.95
SCN1A-202ENST00000375405 NSD1Q96L73 2696 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-202ENST00000375405 ANKRD11Q6UB99 2663 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-202ENST00000375405 ITPR3Q14573 2671 aa2.84□□□□□ -1.95
SCN1A-202ENST00000375405 COL4A2P08572 1712 aa2.83□□□□□ -1.96
SCN1A-202ENST00000375405 Q75L30 129 aa2.82□□□□□ -1.96
SCN1A-202ENST00000375405 UNC79Q9P2D8 2635 aa2.82□□□□□ -1.96
SCN1A-202ENST00000375405 CNBPP62633 177 aaKnown RBP2.8□□□□□ -1.96
SCN1A-202ENST00000375405 CYSTM1Q9H1C7 97 aa2.8□□□□□ -1.96
SCN1A-202ENST00000375405 IGSF10Q6WRI0 2623 aa2.8□□□□□ -1.96
SCN1A-202ENST00000375405 EP400Q96L91 3159 aa2.79□□□□□ -1.96
SCN1A-202ENST00000375405 Q5XG85 94 aa2.79□□□□□ -1.96
SCN1A-202ENST00000375405 A0A1B0GVY2 172 aa2.79□□□□□ -1.96
SCN1A-202ENST00000375405 CENPEQ02224 2701 aa2.79□□□□□ -1.96
SCN1A-202ENST00000375405 COL6A5A8TX70 2615 aa2.79□□□□□ -1.96
SCN1A-202ENST00000375405 MMP24-AS1A0A0U1RRL7 71 aa2.78□□□□□ -1.96
SCN1A-202ENST00000375405 PANO1I0J062 215 aa2.78□□□□□ -1.96
SCN1A-202ENST00000375405 FLNBO75369 2602 aaKnown RBP2.78□□□□□ -1.97
SCN1A-202ENST00000375405 CENPFP49454 3210 aa2.78□□□□□ -1.97
SCN1A-202ENST00000375405 GIG44P09565 113 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-202ENST00000375405 KMT2BQ9UMN6 2715 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-202ENST00000375405 DNAH12Q6ZR08 3092 aa2.77□□□□□ -1.97
SCN1A-202ENST00000375405 GCN1Q92616 2671 aaKnown RBP2.76□□□□□ -1.97
SCN1A-202ENST00000375405 KRTAP10-3P60369 221 aa2.76□□□□□ -1.97
SCN1A-202ENST00000375405 PRO2289Q9P1D8 64 aa2.76□□□□□ -1.97
SCN1A-202ENST00000375405 SETXQ7Z333 2677 aaKnown RBP2.76□□□□□ -1.97
SCN1A-202ENST00000375405 CEP350Q5VT06 3117 aa2.75□□□□□ -1.97
SCN1A-202ENST00000375405 C5orf42Q9H799 3197 aa2.75□□□□□ -1.97
SCN1A-202ENST00000375405 OCR1Q9BZK8 76 aa2.74□□□□□ -1.97
SCN1A-202ENST00000375405 PP632Q6XCG6 107 aa2.73□□□□□ -1.97
SCN1A-202ENST00000375405 LCE6AA0A183 80 aa2.73□□□□□ -1.97
SCN1A-202ENST00000375405 Q5VV11 94 aa2.73□□□□□ -1.97
SCN1A-202ENST00000375405 A8MU10 97 aa2.73□□□□□ -1.97
SCN1A-202ENST00000375405 KRTAP10-10P60014 251 aa2.72□□□□□ -1.97
SCN1A-202ENST00000375405 TEX15Q9BXT5 2789 aa2.72□□□□□ -1.97
SCN1A-202ENST00000375405 DNAH14Q0VDD8 3507 aa2.72□□□□□ -1.97
SCN1A-202ENST00000375405 KRTAP10-1P60331 282 aa2.71□□□□□ -1.98
SCN1A-202ENST00000375405 CHD6Q8TD26 2715 aa2.71□□□□□ -1.98
SCN1A-202ENST00000375405 XIRP2A4UGR9 3374 aa2.7□□□□□ -1.98
SCN1A-202ENST00000375405 ITPR2Q14571 2701 aa2.7□□□□□ -1.98
SCN1A-202ENST00000375405 TNRC18O15417 2968 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-202ENST00000375405 KRTAP10-2P60368 255 aa2.69□□□□□ -1.98
SCN1A-202ENST00000375405 KRTAP25-1Q3LHN0 102 aa2.69□□□□□ -1.98
SCN1A-202ENST00000375405 KRTAP4-16G5E9R7 235 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-202ENST00000375405 A0A096LNT2 108 aa2.67□□□□□ -1.98
SCN1A-202ENST00000375405 TRIOO75962 3097 aa2.67□□□□□ -1.98
SCN1A-202ENST00000375405 A0A087X002 238 aa2.66□□□□□ -1.98
SCN1A-202ENST00000375405 CRYBG3Q68DQ2 2970 aa2.66□□□□□ -1.98
SCN1A-202ENST00000375405 SZT2Q5T011 3432 aa2.65□□□□□ -1.98
SCN1A-202ENST00000375405 MKI67P46013 3256 aaKnown RBP2.64□□□□□ -1.99
SCN1A-202ENST00000375405 CRCT1Q9UGL9 99 aa2.63□□□□□ -1.99
SCN1A-202ENST00000375405 FLNAP21333 2647 aaKnown RBP2.63□□□□□ -1.99
SCN1A-202ENST00000375405 CELSR3Q9NYQ7 3312 aa2.62□□□□□ -1.99
SCN1A-202ENST00000375405 REV3LO60673 3130 aa2.61□□□□□ -1.99
SCN1A-202ENST00000375405 CDH23Q9H251 3354 aa2.6□□□□□ -1.99
SCN1A-202ENST00000375405 KRTAP26-1Q6PEX3 210 aa2.6□□□□□ -1.99
SCN1A-202ENST00000375405 LAMA2P24043 3122 aaKnown RBP2.6□□□□□ -1.99
SCN1A-202ENST00000375405 A0A0C4DFX4 3053 aa2.6□□□□□ -1.99
SCN1A-202ENST00000375405 USP34Q70CQ2 3546 aa2.59□□□□□ -1.99
SCN1A-202ENST00000375405 BRCA2P51587 3418 aa2.59□□□□□ -1.99
SCN1A-202ENST00000375405 SPRR1AP35321 89 aa2.59□□□□□ -1.99
SCN1A-202ENST00000375405 LINC00472Q9H8W2 130 aa2.59□□□□□ -1.99
SCN1A-202ENST00000375405 RANBP2P49792 3224 aaKnown RBP2.59□□□□□ -2
SCN1A-202ENST00000375405 NOTCH2NLQ7Z3S9 236 aa2.58□□□□□ -2
SCN1A-202ENST00000375405 ZNF292O60281 2723 aa2.58□□□□□ -2
SCN1A-202ENST00000375405 RPS29P62273 56 aaKnown RBP2.56□□□□□ -2
SCN1A-202ENST00000375405 KRTAP1-3Q8IUG1 177 aa2.55□□□□□ -2
SCN1A-202ENST00000375405 FREM2Q5SZK8 3169 aa2.55□□□□□ -2
SCN1A-202ENST00000375405 KRTAP29-1A8MX34 341 aaPredicted RBP2.55□□□□□ -2
SCN1A-202ENST00000375405 ASB16-AS1Q495Z4 193 aa2.55□□□□□ -2
SCN1A-202ENST00000375405 A6NN06 94 aa2.55□□□□□ -2
SCN1A-202ENST00000375405 Q6ZRN7 208 aaPredicted RBP2.54□□□□□ -2
SCN1A-202ENST00000375405 LAMA3Q16787 3333 aa2.54□□□□□ -2
SCN1A-202ENST00000375405 UTP20O75691 2785 aaKnown RBP2.54□□□□□ -2
SCN1A-202ENST00000375405 CFAP54Q96N23 3096 aa2.54□□□□□ -2
SCN1A-202ENST00000375405 CHD9Q3L8U1 2897 aa2.53□□□□□ -2
SCN1A-202ENST00000375405 FRYQ5TBA9 3013 aa2.53□□□□□ -2
SCN1A-202ENST00000375405 UNC80Q8N2C7 3258 aa2.53□□□□□ -2
SCN1A-202ENST00000375405 DCHS1Q96JQ0 3298 aa2.53□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP1-5Q9BYS1 174 aa2.52□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP10-6P60371 365 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-202ENST00000375405 APCP25054 2843 aa2.52□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP1-1Q07627 177 aa2.52□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP12-2P59991 146 aa2.51□□□□□ -2.01
SCN1A-202ENST00000375405 MYO15AQ9UKN7 3530 aa2.51□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP17-1Q9BYP8 105 aa2.51□□□□□ -2.01
SCN1A-202ENST00000375405 COL6A3P12111 3177 aa2.51□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP11-1Q8IUC1 163 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms