RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 KIAA1549Q9HCM3 1950 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 KRTAP10-2P60368 255 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 VCANP13611 3396 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 M0QZ58 72 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 SMIM29Q86T20 159 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 TTTY13Q9BZ97 58 aa2.51□□□□□ -2.01
USH2A-202ENST00000366942 COA6Q5JTJ3 125 aaKnown RBP2.51□□□□□ -2.01
USH2A-202ENST00000366942 A0A1W2PNM2 257 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 EIF4EBP3O60516 100 aaPredicted RBP2.5□□□□□ -2.01
USH2A-202ENST00000366942 CHD7Q9P2D1 2997 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 ZFHX4Q86UP3 3567 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 HCFC1P51610 2035 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 MAP1AP78559 2803 aaPredicted RBP2.5□□□□□ -2.01
USH2A-202ENST00000366942 A0A0D9SG42 100 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 MYO15AQ9UKN7 3530 aa2.5□□□□□ -2.01
USH2A-202ENST00000366942 Q8N377 158 aa2.49□□□□□ -2.01
USH2A-202ENST00000366942 LOC110117498A0A087WWA1 95 aa2.49□□□□□ -2.01
USH2A-202ENST00000366942 TEX15Q9BXT5 2789 aa2.49□□□□□ -2.01
USH2A-202ENST00000366942 PCSK5Q92824 1860 aa2.48□□□□□ -2.01
USH2A-202ENST00000366942 H1FX-AS1Q4G0G2 97 aa2.48□□□□□ -2.01
USH2A-202ENST00000366942 DMAC1Q96GE9 116 aa2.48□□□□□ -2.01
USH2A-202ENST00000366942 Q6ZRN7 208 aaPredicted RBP2.48□□□□□ -2.01
USH2A-202ENST00000366942 GIG44P09565 113 aaPredicted RBP2.48□□□□□ -2.01
USH2A-202ENST00000366942 TENM4Q6N022 2769 aa2.47□□□□□ -2.01
USH2A-202ENST00000366942 UTP20O75691 2785 aaKnown RBP2.47□□□□□ -2.01
USH2A-202ENST00000366942 SPRR1BP22528 89 aa2.47□□□□□ -2.01
USH2A-202ENST00000366942 BSNQ9UPA5 3926 aa2.47□□□□□ -2.01
USH2A-202ENST00000366942 C1orf195Q5TG92 126 aa2.46□□□□□ -2.02
USH2A-202ENST00000366942 NSD1Q96L73 2696 aaPredicted RBP2.46□□□□□ -2.02
USH2A-202ENST00000366942 KRTAP10-10P60014 251 aa2.45□□□□□ -2.02
USH2A-202ENST00000366942 RANBP2P49792 3224 aaKnown RBP2.45□□□□□ -2.02
USH2A-202ENST00000366942 CCDC179H3BU77 68 aa2.45□□□□□ -2.02
USH2A-202ENST00000366942 Q8NDZ9 215 aa2.45□□□□□ -2.02
USH2A-202ENST00000366942 C4orf26Q17RF5 130 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 COX7CP15954 63 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 YPEL4Q96NS1 127 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 A0A1B0GU33 70 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 LOC105371267A0A1B0GV96 52 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 WFDC2Q14508 124 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 MIR22HGQ0VDD5 57 aa2.44□□□□□ -2.02
USH2A-202ENST00000366942 RPL37P61927 97 aaKnown RBP2.44□□□□□ -2.02
USH2A-202ENST00000366942 PMAIP1Q13794 54 aa2.43□□□□□ -2.02
USH2A-202ENST00000366942 TPRXLQ17RH7 258 aa2.43□□□□□ -2.02
USH2A-202ENST00000366942 ADAMTSL4-AS1Q5T5F5 129 aa2.43□□□□□ -2.02
USH2A-202ENST00000366942 COL6A3P12111 3177 aa2.43□□□□□ -2.02
USH2A-202ENST00000366942 NOTCH2NLQ7Z3S9 236 aa2.43□□□□□ -2.02
USH2A-202ENST00000366942 Q75L30 129 aa2.42□□□□□ -2.02
USH2A-202ENST00000366942 COL27A1Q8IZC6 1860 aaPredicted RBP2.42□□□□□ -2.02
USH2A-202ENST00000366942 A0A087X002 238 aa2.42□□□□□ -2.02
USH2A-202ENST00000366942 Q1T7F1 81 aa2.42□□□□□ -2.02
USH2A-202ENST00000366942 P0C880 135 aa2.41□□□□□ -2.02
USH2A-202ENST00000366942 CFAP54Q96N23 3096 aa2.41□□□□□ -2.02
USH2A-202ENST00000366942 A0A087WVE0 104 aa2.41□□□□□ -2.02
USH2A-202ENST00000366942 CYP4F30PQ9H0H9 118 aa2.41□□□□□ -2.02
USH2A-202ENST00000366942 DNAH14Q0VDD8 3507 aa2.4□□□□□ -2.03
USH2A-202ENST00000366942 ZNF292O60281 2723 aa2.4□□□□□ -2.03
USH2A-202ENST00000366942 CHD6Q8TD26 2715 aa2.4□□□□□ -2.03
USH2A-202ENST00000366942 TNP1P09430 55 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 A0A0G2JQZ4 141 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 TRIOO75962 3097 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 KMT2BQ9UMN6 2715 aaPredicted RBP2.39□□□□□ -2.03
USH2A-202ENST00000366942 WDFY4Q6ZS81 3184 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 KRTAP3-3Q9BYR6 98 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 KRTAP3-2Q9BYR7 98 aa2.39□□□□□ -2.03
USH2A-202ENST00000366942 COA5Q86WW8 74 aa2.38□□□□□ -2.03
USH2A-202ENST00000366942 TSPEAR-AS2P59090 65 aa2.38□□□□□ -2.03
USH2A-202ENST00000366942 A8MUU9 505 aa2.37□□□□□ -2.03
USH2A-202ENST00000366942 KRTAP1-5Q9BYS1 174 aa2.37□□□□□ -2.03
USH2A-202ENST00000366942 KRTAP10-8P60410 259 aa2.37□□□□□ -2.03
USH2A-202ENST00000366942 DCHS1Q96JQ0 3298 aa2.37□□□□□ -2.03
USH2A-202ENST00000366942 ADM2Q7Z4H4 148 aa2.37□□□□□ -2.03
USH2A-202ENST00000366942 PSPHP1O15172 72 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 KLKP1Q107X0 134 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 HIVEP1P15822 2718 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 FRYLO94915 3013 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 A0A0A0MQY5 61 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 SPEGQ15772 3267 aa2.36□□□□□ -2.03
USH2A-202ENST00000366942 LOC100996750A0A140TA64 210 aa2.35□□□□□ -2.03
USH2A-202ENST00000366942 KRTAP4-6Q9BYQ5 205 aa2.35□□□□□ -2.03
USH2A-202ENST00000366942 ASB16-AS1Q495Z4 193 aa2.35□□□□□ -2.03
USH2A-202ENST00000366942 LCE2DQ5TA82 110 aaPredicted RBP2.35□□□□□ -2.03
USH2A-202ENST00000366942 SPANXA2-OT1Q8N9U9 137 aa2.35□□□□□ -2.03
USH2A-202ENST00000366942 Q8N9P0 234 aaPredicted RBP2.35□□□□□ -2.03
USH2A-202ENST00000366942 C5orf42Q9H799 3197 aa2.35□□□□□ -2.03
USH2A-202ENST00000366942 MMP24-AS1A0A0U1RRL7 71 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 LAMA1P25391 3075 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 UBR5O95071 2799 aaPredicted RBP2.34□□□□□ -2.03
USH2A-202ENST00000366942 Q5XG85 94 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 KTN1-AS1Q86SY8 53 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 CENPEQ02224 2701 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 ASPMQ8IZT6 3477 aa2.34□□□□□ -2.03
USH2A-202ENST00000366942 SPRR1AP35321 89 aa2.34□□□□□ -2.04
USH2A-202ENST00000366942 TENM3Q9P273 2699 aa2.34□□□□□ -2.04
USH2A-202ENST00000366942 VPS13AQ96RL7 3174 aa2.33□□□□□ -2.04
USH2A-202ENST00000366942 CFAP47Q6ZTR5 3102 aa2.32□□□□□ -2.04
USH2A-202ENST00000366942 Q5VV11 94 aa2.31□□□□□ -2.04
USH2A-202ENST00000366942 FBN3Q75N90 2809 aa2.31□□□□□ -2.04
USH2A-202ENST00000366942 SMG1Q96Q15 3661 aaKnown RBP2.31□□□□□ -2.04
USH2A-202ENST00000366942 FRYQ5TBA9 3013 aa2.31□□□□□ -2.04
USH2A-202ENST00000366942 ITPR2Q14571 2701 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms