RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 FAM229BQ4G0N7 80 aa7.57□□□□□ -1.2
PCF11-201ENST00000298281 ZCCHC13Q8WW36 166 aaKnown RBP7.56□□□□□ -1.2
PCF11-201ENST00000298281 ROMO1P60602 79 aa7.55□□□□□ -1.2
PCF11-201ENST00000298281 OCR1Q9BZK8 76 aa7.55□□□□□ -1.2
PCF11-201ENST00000298281 PRAC1Q96KF2 57 aa7.54□□□□□ -1.2
PCF11-201ENST00000298281 CASC10Q5T4H9 136 aa7.54□□□□□ -1.2
PCF11-201ENST00000298281 BRCA2P51587 3418 aa7.54□□□□□ -1.2
PCF11-201ENST00000298281 Q75L30 129 aa7.5□□□□□ -1.21
PCF11-201ENST00000298281 ADM2Q7Z4H4 148 aa7.49□□□□□ -1.21
PCF11-201ENST00000298281 RPL37P61927 97 aaKnown RBP7.48□□□□□ -1.21
PCF11-201ENST00000298281 LINC01558Q9Y6Z2 57 aa7.47□□□□□ -1.21
PCF11-201ENST00000298281 NBEAL1Q6ZS30 2694 aa7.46□□□□□ -1.22
PCF11-201ENST00000298281 XIRP2A4UGR9 3374 aa7.45□□□□□ -1.22
PCF11-201ENST00000298281 KRTAP1-3Q8IUG1 177 aa7.45□□□□□ -1.22
PCF11-201ENST00000298281 KRTAP16-1A8MUX0 517 aa7.45□□□□□ -1.22
PCF11-201ENST00000298281 BAHCC1Q9P281 2608 aa7.43□□□□□ -1.22
PCF11-201ENST00000298281 KRTAP1-1Q07627 177 aa7.42□□□□□ -1.22
PCF11-201ENST00000298281 PLAC8Q9NZF1 115 aa7.41□□□□□ -1.22
PCF11-201ENST00000298281 FP248Q71RG6 208 aaPredicted RBP7.39□□□□□ -1.23
PCF11-201ENST00000298281 Q8NDZ9 215 aa7.38□□□□□ -1.23
PCF11-201ENST00000298281 PRUNE2Q8WUY3 3088 aa7.38□□□□□ -1.23
PCF11-201ENST00000298281 CENPEQ02224 2701 aa7.37□□□□□ -1.23
PCF11-201ENST00000298281 MMP24-AS1A0A0U1RRL7 71 aa7.36□□□□□ -1.23
PCF11-201ENST00000298281 SPRR1AP35321 89 aa7.36□□□□□ -1.23
PCF11-201ENST00000298281 Q5W150 140 aa7.36□□□□□ -1.23
PCF11-201ENST00000298281 OXTP01178 125 aa7.35□□□□□ -1.23
PCF11-201ENST00000298281 LAMA3Q16787 3333 aa7.34□□□□□ -1.23
PCF11-201ENST00000298281 CHD6Q8TD26 2715 aa7.34□□□□□ -1.23
PCF11-201ENST00000298281 SPRR1BP22528 89 aa7.34□□□□□ -1.23
PCF11-201ENST00000298281 TEX15Q9BXT5 2789 aa7.33□□□□□ -1.24
PCF11-201ENST00000298281 CDH23Q9H251 3354 aa7.32□□□□□ -1.24
PCF11-201ENST00000298281 SPATA8Q6RVD6 105 aa7.32□□□□□ -1.24
PCF11-201ENST00000298281 TEP1Q99973 2627 aaKnown RBP7.31□□□□□ -1.24
PCF11-201ENST00000298281 UNC79Q9P2D8 2635 aa7.3□□□□□ -1.24
PCF11-201ENST00000298281 SETXQ7Z333 2677 aaKnown RBP7.3□□□□□ -1.24
PCF11-201ENST00000298281 NOTCH1P46531 2555 aa7.29□□□□□ -1.24
PCF11-201ENST00000298281 RANBP2P49792 3224 aaKnown RBP7.29□□□□□ -1.24
PCF11-201ENST00000298281 LINC00472Q9H8W2 130 aa7.28□□□□□ -1.24
PCF11-201ENST00000298281 STAB2Q8WWQ8 2551 aa7.28□□□□□ -1.24
PCF11-201ENST00000298281 REV3LO60673 3130 aa7.27□□□□□ -1.25
PCF11-201ENST00000298281 CHD7Q9P2D1 2997 aa7.24□□□□□ -1.25
PCF11-201ENST00000298281 HTTP42858 3142 aa7.24□□□□□ -1.25
PCF11-201ENST00000298281 P0C880 135 aa7.22□□□□□ -1.25
PCF11-201ENST00000298281 Q5VV11 94 aa7.22□□□□□ -1.25
PCF11-201ENST00000298281 C10orf95Q9H7T3 257 aa7.21□□□□□ -1.25
PCF11-201ENST00000298281 A8MUU9 505 aa7.2□□□□□ -1.26
PCF11-201ENST00000298281 COL6A5A8TX70 2615 aa7.18□□□□□ -1.26
PCF11-201ENST00000298281 LAMA2P24043 3122 aaKnown RBP7.17□□□□□ -1.26
PCF11-201ENST00000298281 CFAP54Q96N23 3096 aa7.16□□□□□ -1.26
PCF11-201ENST00000298281 Q5XG85 94 aa7.14□□□□□ -1.27
PCF11-201ENST00000298281 DNAH14Q0VDD8 3507 aa7.14□□□□□ -1.27
PCF11-201ENST00000298281 SZT2Q5T011 3432 aa7.14□□□□□ -1.27
PCF11-201ENST00000298281 PANO1I0J062 215 aa7.14□□□□□ -1.27
PCF11-201ENST00000298281 A0A0C4DFX4 3053 aa7.13□□□□□ -1.27
PCF11-201ENST00000298281 GCN1Q92616 2671 aaKnown RBP7.13□□□□□ -1.27
PCF11-201ENST00000298281 TNP1P09430 55 aa7.12□□□□□ -1.27
PCF11-201ENST00000298281 ASB16-AS1Q495Z4 193 aa7.12□□□□□ -1.27
PCF11-201ENST00000298281 LCE6AA0A183 80 aa7.11□□□□□ -1.27
PCF11-201ENST00000298281 KRTAP26-1Q6PEX3 210 aa7.1□□□□□ -1.27
PCF11-201ENST00000298281 COL6A3P12111 3177 aa7.1□□□□□ -1.27
PCF11-201ENST00000298281 NDUFAF8A1L188 74 aa7.09□□□□□ -1.27
PCF11-201ENST00000298281 Q6ZR54 194 aa7.09□□□□□ -1.27
PCF11-201ENST00000298281 CELSR3Q9NYQ7 3312 aa7.08□□□□□ -1.28
PCF11-201ENST00000298281 KRTAP10-1P60331 282 aa7.07□□□□□ -1.28
PCF11-201ENST00000298281 KRTAP1-5Q9BYS1 174 aa7.06□□□□□ -1.28
PCF11-201ENST00000298281 ZNF292O60281 2723 aa7.06□□□□□ -1.28
PCF11-201ENST00000298281 SPTBN5Q9NRC6 3674 aaKnown RBP7.04□□□□□ -1.28
PCF11-201ENST00000298281 UNC80Q8N2C7 3258 aa7.04□□□□□ -1.28
PCF11-201ENST00000298281 KRTAP10-2P60368 255 aa7.02□□□□□ -1.29
PCF11-201ENST00000298281 CYSTM1Q9H1C7 97 aa7.02□□□□□ -1.29
PCF11-201ENST00000298281 TRANK1O15050 2925 aa7.02□□□□□ -1.29
PCF11-201ENST00000298281 FREM2Q5SZK8 3169 aa7.02□□□□□ -1.29
PCF11-201ENST00000298281 KRTAP10-8P60410 259 aa7□□□□□ -1.29
PCF11-201ENST00000298281 TNRC18O15417 2968 aaPredicted RBP6.99□□□□□ -1.29
PCF11-201ENST00000298281 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
PCF11-201ENST00000298281 A8MU10 97 aa6.98□□□□□ -1.29
PCF11-201ENST00000298281 KRTAP4-16G5E9R7 235 aaPredicted RBP6.98□□□□□ -1.29
PCF11-201ENST00000298281 RPS29P62273 56 aaKnown RBP6.98□□□□□ -1.29
PCF11-201ENST00000298281 NSD1Q96L73 2696 aaPredicted RBP6.97□□□□□ -1.29
PCF11-201ENST00000298281 KRTAP29-1A8MX34 341 aaPredicted RBP6.96□□□□□ -1.3
PCF11-201ENST00000298281 KMT2BQ9UMN6 2715 aaPredicted RBP6.96□□□□□ -1.3
PCF11-201ENST00000298281 EYSQ5T1H1 3165 aa6.95□□□□□ -1.3
PCF11-201ENST00000298281 WDFY4Q6ZS81 3184 aa6.95□□□□□ -1.3
PCF11-201ENST00000298281 MAP1AP78559 2803 aaPredicted RBP6.94□□□□□ -1.3
PCF11-201ENST00000298281 ITPR2Q14571 2701 aa6.93□□□□□ -1.3
PCF11-201ENST00000298281 USP34Q70CQ2 3546 aa6.92□□□□□ -1.3
PCF11-201ENST00000298281 CHD9Q3L8U1 2897 aa6.91□□□□□ -1.3
PCF11-201ENST00000298281 TRIOO75962 3097 aa6.91□□□□□ -1.3
PCF11-201ENST00000298281 CRYBG3Q68DQ2 2970 aa6.9□□□□□ -1.3
PCF11-201ENST00000298281 LAMA1P25391 3075 aa6.89□□□□□ -1.31
PCF11-201ENST00000298281 NBEAL2Q6ZNJ1 2754 aa6.89□□□□□ -1.31
PCF11-201ENST00000298281 UBR5O95071 2799 aaPredicted RBP6.89□□□□□ -1.31
PCF11-201ENST00000298281 A0A087X002 238 aa6.88□□□□□ -1.31
PCF11-201ENST00000298281 VCANP13611 3396 aa6.88□□□□□ -1.31
PCF11-201ENST00000298281 MGAQ8IWI9 3026 aa6.87□□□□□ -1.31
PCF11-201ENST00000298281 IGSF10Q6WRI0 2623 aa6.87□□□□□ -1.31
PCF11-201ENST00000298281 VPS13AQ96RL7 3174 aa6.86□□□□□ -1.31
PCF11-201ENST00000298281 APCP25054 2843 aa6.84□□□□□ -1.31
PCF11-201ENST00000298281 A0A1B0GVY2 172 aa6.82□□□□□ -1.32
PCF11-201ENST00000298281 NOTCH2NLQ7Z3S9 236 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms