RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 CCL19Q99731 98 aa1.12□□□□□ -2.23
LIMA1-207ENST00000551486 COL5A1P20908 1838 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-207ENST00000551486 DNHD1Q96M86 4753 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 CEP192Q8TEP8 1941 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 SORL1Q92673 2214 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 IGKV2-28A0A075B6P5 120 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 NDUFA1O15239 70 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 IGKV2D-28P01615 120 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 RPS27P42677 84 aaKnown RBP1.11□□□□□ -2.23
LIMA1-207ENST00000551486 EPG5Q9HCE0 2579 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 RYR1P21817 5038 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 BDP1A6H8Y1 2624 aa1.11□□□□□ -2.23
LIMA1-207ENST00000551486 MKI67P46013 3256 aaKnown RBP1.11□□□□□ -2.23
LIMA1-207ENST00000551486 ZNF292O60281 2723 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 SCN7AQ01118 1682 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 KIAA1109Q2LD37 5005 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 NRXN2Q9P2S2 1712 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 ITPR3Q14573 2671 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 PIEZO1Q92508 2521 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 F5P12259 2224 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 CADP27708 2225 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 MED13LQ71F56 2210 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 DEFB131BA0A096LNP1 70 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 G3V318 75 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 CCL22O00626 93 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 C10orf55Q5SWW7 151 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 Q6ZRX8 168 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 LEAP2Q969E1 77 aa1.1□□□□□ -2.23
LIMA1-207ENST00000551486 C4AP0C0L4 1744 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 C4BP0C0L5 1744 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 PARP4Q9UKK3 1724 aaKnown RBP1.09□□□□□ -2.23
LIMA1-207ENST00000551486 TOGARAM1Q9Y4F4 1720 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 GOLGB1Q14789 3259 aaKnown RBP1.09□□□□□ -2.23
LIMA1-207ENST00000551486 IGKV2D-24A0A075B6R9 120 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 POLR2KP53803 58 aaKnown RBP1.09□□□□□ -2.23
LIMA1-207ENST00000551486 RPL39P62891 51 aaKnown RBP1.09□□□□□ -2.23
LIMA1-207ENST00000551486 LINC00575Q6W349 94 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 Q8IZM0 81 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 PLAC4Q8WY50 150 aa1.09□□□□□ -2.23
LIMA1-207ENST00000551486 HECTD1Q9ULT8 2610 aa1.09□□□□□ -2.24
LIMA1-207ENST00000551486 ABCA1O95477 2261 aa1.09□□□□□ -2.24
LIMA1-207ENST00000551486 RTTNQ86VV8 2226 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 A0A096LNT2 108 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 INE1O15225 51 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 PIGYQ3MUY2 71 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 RPL39LQ96EH5 51 aaKnown RBP1.08□□□□□ -2.24
LIMA1-207ENST00000551486 ZFHX2Q9C0A1 2572 aaPredicted RBP1.08□□□□□ -2.24
LIMA1-207ENST00000551486 CENPFP49454 3210 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 NRAPQ86VF7 1730 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 BCORQ6W2J9 1755 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 ASXL3Q9C0F0 2248 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 GCN1Q92616 2671 aaKnown RBP1.08□□□□□ -2.24
LIMA1-207ENST00000551486 KALRNO60229 2985 aa1.08□□□□□ -2.24
LIMA1-207ENST00000551486 SPTBN4Q9H254 2564 aa1.07□□□□□ -2.24
LIMA1-207ENST00000551486 REV3LO60673 3130 aa1.07□□□□□ -2.24
LIMA1-207ENST00000551486 GVQW2A0A096LPI5 108 aaPredicted RBP1.07□□□□□ -2.24
LIMA1-207ENST00000551486 SPTY2D1-AS1A0A0U1RR47 76 aa1.07□□□□□ -2.24
LIMA1-207ENST00000551486 MRPL33O75394 65 aaKnown RBP1.07□□□□□ -2.24
LIMA1-207ENST00000551486 PCOTHQ58A44 107 aa1.07□□□□□ -2.24
LIMA1-207ENST00000551486 VWFP04275 2813 aa1.07□□□□□ -2.24
LIMA1-207ENST00000551486 RANBP2P49792 3224 aaKnown RBP1.07□□□□□ -2.24
LIMA1-207ENST00000551486 ABCA2Q9BZC7 2435 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 TECTAO75443 2155 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 I3L2K1 104 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 LY6G6CO95867 125 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 ANGP03950 147 aaKnown RBP1.06□□□□□ -2.24
LIMA1-207ENST00000551486 KRTAP10-10P60014 251 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 IGFL1Q6UW32 110 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 Q6ZRN7 208 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-207ENST00000551486 DEFB104AQ8WTQ1 72 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 AHCTF1Q8WYP5 2266 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 ASPMQ8IZT6 3477 aa1.06□□□□□ -2.24
LIMA1-207ENST00000551486 STAB1Q9NY15 2570 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 RELNP78509 3460 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 K7EQZ3 153 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 COX6A2Q02221 97 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 WFDC13Q8IUB5 93 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 DEFB106AQ8N104 65 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 KNTC1P50748 2209 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 CACNA1CQ13936 2221 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 CSMD1Q96PZ7 3565 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 PDE4DIPQ5VU43 2346 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 FN1P02751 2386 aaKnown RBP1.05□□□□□ -2.24
LIMA1-207ENST00000551486 GPR179Q6PRD1 2367 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 DOPEY1Q5JWR5 2465 aa1.05□□□□□ -2.24
LIMA1-207ENST00000551486 COL4A5P29400 1685 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 LMO7Q8WWI1 1683 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 URB1O60287 2271 aaKnown RBP1.04□□□□□ -2.24
LIMA1-207ENST00000551486 PLXNB2O15031 1838 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 FASNP49327 2511 aaKnown RBP1.04□□□□□ -2.24
LIMA1-207ENST00000551486 PRCDQ00LT1 54 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 WFDC10BQ8IUB3 73 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 C10orf95Q9H7T3 257 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 SPEGQ15772 3267 aa1.04□□□□□ -2.24
LIMA1-207ENST00000551486 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.04□□□□□ -2.24
LIMA1-207ENST00000551486 FLG2Q5D862 2391 aaPredicted RBP1.04□□□□□ -2.24
LIMA1-207ENST00000551486 BRCA2P51587 3418 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 ABCA12Q86UK0 2595 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 LRRC37AA6NMS7 1700 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms