RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
LIMA1-207ENST00000551486 CHIC1Q5VXU3 224 aa14.15□□□□□ -0.14
LIMA1-207ENST00000551486 SENP3Q9H4L4 574 aaPredicted RBP12.94□□□□□ -0.34
LIMA1-207ENST00000551486 PHF23Q9BUL5 403 aaPredicted RBP12.7□□□□□ -0.38
LIMA1-207ENST00000551486 POTEDQ86YR6 584 aa12.67□□□□□ -0.38
LIMA1-207ENST00000551486 FOXD1Q16676 465 aa12.01□□□□□ -0.49
LIMA1-207ENST00000551486 MSH5O43196 834 aa11.49□□□□□ -0.57
LIMA1-207ENST00000551486 PIAS4Q8N2W9 510 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-207ENST00000551486 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
LIMA1-207ENST00000551486 PPP6R1Q9UPN7 881 aa10.99□□□□□ -0.65
LIMA1-207ENST00000551486 ADRA2BP18089 450 aa10.98□□□□□ -0.65
LIMA1-207ENST00000551486 CACNB1Q02641 598 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-207ENST00000551486 SCAF1Q9H7N4 1312 aaKnown RBP10.22□□□□□ -0.77
LIMA1-207ENST00000551486 DMRT2Q9Y5R5 561 aa10.18□□□□□ -0.78
LIMA1-207ENST00000551486 MAPK8IP2Q13387 824 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-207ENST00000551486 DCAF8L1A6NGE4 600 aa9.86□□□□□ -0.83
LIMA1-207ENST00000551486 POTEHQ6S545 545 aa9.75□□□□□ -0.85
LIMA1-207ENST00000551486 PPP4R3CPQ6ZMV5 832 aa9.73□□□□□ -0.85
LIMA1-207ENST00000551486 RNF39Q9H2S5 420 aa9.73□□□□□ -0.85
LIMA1-207ENST00000551486 HOXD11P31277 338 aaPredicted RBP9.7□□□□□ -0.86
LIMA1-207ENST00000551486 CNKSR2Q8WXI2 1034 aa9.63□□□□□ -0.87
LIMA1-207ENST00000551486 RNF216Q9NWF9 866 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-207ENST00000551486 C1QBPQ07021 282 aaKnown RBP9.58□□□□□ -0.88
LIMA1-207ENST00000551486 DNAJC5BQ9UF47 199 aa9.46□□□□□ -0.9
LIMA1-207ENST00000551486 NCBP3Q53F19 620 aaKnown RBP9.39□□□□□ -0.91
LIMA1-207ENST00000551486 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIMA1-207ENST00000551486 NPM3O75607 178 aaKnown RBP9.11□□□□□ -0.95
LIMA1-207ENST00000551486 CAPN15O75808 1086 aa9.04□□□□□ -0.96
LIMA1-207ENST00000551486 U3KPZ7 1027 aaPredicted RBP9□□□□□ -0.97
LIMA1-207ENST00000551486 DSG3P32926 999 aa8.96□□□□□ -0.98
LIMA1-207ENST00000551486 SPINK5Q9NQ38 1064 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-207ENST00000551486 APLP2Q06481 763 aa8.92□□□□□ -0.98
LIMA1-207ENST00000551486 TRHP20396 242 aaPredicted RBP8.82□□□□□ -1
LIMA1-207ENST00000551486 ZNF219Q9P2Y4 722 aaPredicted RBP8.82□□□□□ -1
LIMA1-207ENST00000551486 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.81□□□□□ -1
LIMA1-207ENST00000551486 HNRNPUL2Q1KMD3 747 aaKnown RBP8.81□□□□□ -1
LIMA1-207ENST00000551486 ABCB7O75027 752 aa8.75□□□□□ -1.01
LIMA1-207ENST00000551486 SP7Q8TDD2 431 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-207ENST00000551486 SLC4A2P04920 1241 aa8.73□□□□□ -1.01
LIMA1-207ENST00000551486 SAMD1Q6SPF0 538 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-207ENST00000551486 KCNA4P22459 653 aa8.7□□□□□ -1.02
LIMA1-207ENST00000551486 RBM42Q9BTD8 480 aaKnown RBP8.67□□□□□ -1.02
LIMA1-207ENST00000551486 CHRDL2Q6WN34 429 aa8.58□□□□□ -1.04
LIMA1-207ENST00000551486 MYCNP04198 464 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-207ENST00000551486 POLA2Q14181 598 aa8.5□□□□□ -1.05
LIMA1-207ENST00000551486 ZBTB12Q9Y330 459 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-207ENST00000551486 AKT1S1Q96B36 256 aa8.38□□□□□ -1.07
LIMA1-207ENST00000551486 PLSCR2Q9NRY7 297 aa8.34□□□□□ -1.07
LIMA1-207ENST00000551486 FOXD4L1Q9NU39 408 aa8.27□□□□□ -1.09
LIMA1-207ENST00000551486 REM2Q8IYK8 340 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-207ENST00000551486 SLC4A1APQ9BWU0 796 aaKnown RBP8.24□□□□□ -1.09
LIMA1-207ENST00000551486 HAX1O00165 279 aa8.23□□□□□ -1.09
LIMA1-207ENST00000551486 PIP4P2Q8N4L2 257 aa8.22□□□□□ -1.09
LIMA1-207ENST00000551486 OSCARQ8IYS5 282 aa8.21□□□□□ -1.1
LIMA1-207ENST00000551486 ATF5Q9Y2D1 282 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-207ENST00000551486 LHX8Q68G74 356 aa8.17□□□□□ -1.1
LIMA1-207ENST00000551486 PITPNM1O00562 1244 aa8.15□□□□□ -1.1
LIMA1-207ENST00000551486 FXR2P51116 673 aaKnown RBP eCLIP8.14□□□□□ -1.11
LIMA1-207ENST00000551486 FBLN2P98095 1184 aa8.08□□□□□ -1.12
LIMA1-207ENST00000551486 EVX2Q03828 476 aa8.08□□□□□ -1.12
LIMA1-207ENST00000551486 SPDYE2BA6NHP3 402 aa8.06□□□□□ -1.12
LIMA1-207ENST00000551486 SPDYE6P0CI01 402 aa8.06□□□□□ -1.12
LIMA1-207ENST00000551486 ATXN8OSP0DMR3 200 aa8.06□□□□□ -1.12
LIMA1-207ENST00000551486 SPDYE2Q495Y8 402 aa8.06□□□□□ -1.12
LIMA1-207ENST00000551486 SPDYE1Q8NFV5 336 aaPredicted RBP8□□□□□ -1.13
LIMA1-207ENST00000551486 CLEC11AQ9Y240 323 aa8□□□□□ -1.13
LIMA1-207ENST00000551486 PRKAR2AP13861 404 aaKnown RBP7.98□□□□□ -1.13
LIMA1-207ENST00000551486 ZNF692Q9BU19 519 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-207ENST00000551486 ZBTB22O15209 634 aa7.93□□□□□ -1.14
LIMA1-207ENST00000551486 C19orf67A6NJJ6 358 aa7.89□□□□□ -1.15
LIMA1-207ENST00000551486 GABBR2O75899 941 aa7.86□□□□□ -1.15
LIMA1-207ENST00000551486 SSUH2Q9Y2M2 353 aa7.86□□□□□ -1.15
LIMA1-207ENST00000551486 PRR29P0C7W0 189 aa7.85□□□□□ -1.15
LIMA1-207ENST00000551486 MKRN4PQ13434 485 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-207ENST00000551486 CHADLQ6NUI6 762 aa7.8□□□□□ -1.16
LIMA1-207ENST00000551486 PABPN1Q86U42 306 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMA1-207ENST00000551486 CLCN6P51797 869 aa7.75□□□□□ -1.17
LIMA1-207ENST00000551486 POTEMA6NI47 508 aa7.74□□□□□ -1.17
LIMA1-207ENST00000551486 CD44P16070 742 aaKnown RBP7.72□□□□□ -1.17
LIMA1-207ENST00000551486 POTEIP0CG38 1075 aa7.71□□□□□ -1.18
LIMA1-207ENST00000551486 FARP1Q9Y4F1 1045 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-207ENST00000551486 PCDH10Q9P2E7 1040 aa7.69□□□□□ -1.18
LIMA1-207ENST00000551486 POTEGQ6S5H5 508 aa7.68□□□□□ -1.18
LIMA1-207ENST00000551486 DCBLD2Q96PD2 775 aa7.67□□□□□ -1.18
LIMA1-207ENST00000551486 STAG3Q9UJ98 1225 aa7.6□□□□□ -1.19
LIMA1-207ENST00000551486 ZRANB1Q9UGI0 708 aa7.59□□□□□ -1.19
LIMA1-207ENST00000551486 OTUD5Q96G74 571 aa7.58□□□□□ -1.2
LIMA1-207ENST00000551486 ZNF579Q8NAF0 562 aaKnown RBP7.57□□□□□ -1.2
LIMA1-207ENST00000551486 PAK3O75914 559 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-207ENST00000551486 CREBZFQ9NS37 354 aa7.5□□□□□ -1.21
LIMA1-207ENST00000551486 NPM1P06748 294 aaKnown RBP eCLIP7.48□□□□□ -1.21
LIMA1-207ENST00000551486 GALR2O43603 387 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-207ENST00000551486 SPDYE4A6NLX3 237 aa7.43□□□□□ -1.22
LIMA1-207ENST00000551486 POTEB2H3BUK9 544 aa7.42□□□□□ -1.22
LIMA1-207ENST00000551486 CSRNP3Q8WYN3 585 aa7.4□□□□□ -1.22
LIMA1-207ENST00000551486 PHF12Q96QT6 1004 aa7.4□□□□□ -1.22
LIMA1-207ENST00000551486 LCE2DQ5TA82 110 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-207ENST00000551486 MAMSTRQ6ZN01 415 aa7.36□□□□□ -1.23
LIMA1-207ENST00000551486 SLC39A7Q92504 469 aa7.35□□□□□ -1.23
LIMA1-207ENST00000551486 C7P10643 843 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms