RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 UNQ6190/PRO20217Q6UXQ8 127 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 TMEM91Q6ZNR0 172 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 C7orf65Q6ZTY9 151 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 COA5Q86WW8 74 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 CLVS1Q8IUQ0 354 aaPredicted RBP1.37□□□□□ -2.19
CD44-235ENST00000532339 CIB3Q96Q77 187 aaPredicted RBP1.37□□□□□ -2.19
CD44-235ENST00000532339 PFDN5Q99471 154 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 LYRM2Q9NU23 88 aaPredicted RBP1.37□□□□□ -2.19
CD44-235ENST00000532339 COPZ2Q9P299 210 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 AP4S1Q9Y587 144 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 NBEAP1P0C6P0 100 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 ARMS2P0C7Q2 107 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 METTL15P1P0C7V9 234 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 IAPPP10997 89 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 ZNF25P17030 456 aaPredicted RBP1.36□□□□□ -2.19
CD44-235ENST00000532339 ZNF345Q14585 488 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 Q1T7F1 81 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 MIR17HGQ75NE6 70 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 C9orf16Q9BUW7 83 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 NMES1Q9C002 83 aa1.36□□□□□ -2.19
CD44-235ENST00000532339 TRBV30A0A0K0K1B3 111 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 C1orf196B1AJZ1 125 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 ARL14EPLP0DKL9 152 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 SMIM17P0DL12 118 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 DEFA3P59666 94 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 NDUFA5Q16718 116 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 LINC01554Q52M75 96 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 SPANXN5Q5MJ07 72 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 Q6ZQT0 140 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 TMEM242Q9NWH2 141 aa1.35□□□□□ -2.19
CD44-235ENST00000532339 TRAV1-2A0A0B4J238 106 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 TCRBV3S1A0A5B6 114 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 ZNF727A8MUV8 499 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 TPT1P13693 172 aaKnown RBP1.34□□□□□ -2.19
CD44-235ENST00000532339 C5orf38Q86SI9 138 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 HIST3H2BBQ8N257 126 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 TMEM126AQ9H061 195 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 CST9LQ9H4G1 147 aa1.34□□□□□ -2.19
CD44-235ENST00000532339 LOC107984156A0A0G2JMH3 177 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 M0QY20 66 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 AKR1C3P42330 323 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 RRAS2P62070 204 aaPredicted RBP1.33□□□□□ -2.2
CD44-235ENST00000532339 KRTAP20-2Q3LI61 65 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 GOLT1AQ6ZVE7 132 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 LCA10Q71F78 164 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 Q86TA4 180 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 ARL17AQ8IVW1 177 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 MBD3L1Q8WWY6 194 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 MGST2Q99735 147 aa1.33□□□□□ -2.2
CD44-235ENST00000532339 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.32□□□□□ -2.2
CD44-235ENST00000532339 LOC100130705A0A1B0GUX0 176 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 IGKV2-29A2NJV5 120 aaPredicted RBP1.32□□□□□ -2.2
CD44-235ENST00000532339 TMBIM6P55061 237 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 FAM74A1Q5RGS3 127 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 MIC13Q5XKP0 118 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 FAM167A-AS1Q96KT0 104 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 HYLS1Q96M11 299 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 SPRR2GQ9BYE4 73 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 OSTCQ9NRP0 149 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 CDC42SE2Q9NRR3 84 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 ARL2-SNX15V9GYD0 113 aa1.32□□□□□ -2.2
CD44-235ENST00000532339 SYNE1Q8NF91 8797 aaKnown RBP1.32□□□□□ -2.2
CD44-235ENST00000532339 TMEM238C9JI98 176 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 M0R378 163 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 NCR2O95944 276 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 TCL1BO95988 128 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 KHDC3LQ587J8 217 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 AP3S1Q92572 193 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 GGACTQ9BVM4 153 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 OTORQ9NRC9 128 aa1.31□□□□□ -2.2
CD44-235ENST00000532339 PIGBOS1A0A0B4J2F0 54 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 TRBV6-5A0A0K0K1A5 114 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 F8W036 122 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 SLC25A6P12236 298 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 NCS1P62166 190 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 RHEBQ15382 184 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 NIT2Q9NQR4 276 aa1.3□□□□□ -2.2
CD44-235ENST00000532339 LSM2Q9Y333 95 aaKnown RBP1.3□□□□□ -2.2
CD44-235ENST00000532339 FOXA3P55318 350 aaPredicted RBP1.29□□□□□ -2.2
CD44-235ENST00000532339 UBE2L3P68036 154 aaKnown RBP1.29□□□□□ -2.2
CD44-235ENST00000532339 C9orf153Q5TBE3 101 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 C2orf82Q6UX34 121 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 TMEM14EPQ6UXP3 125 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 OR5H6Q8NGV6 325 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 OR10AG1Q8NH19 301 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 PSENENQ9NZ42 101 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 EPDR1Q9UM22 224 aa1.29□□□□□ -2.2
CD44-235ENST00000532339 TRAV13-1A0A0B4J241 112 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 HMGB3O15347 200 aaKnown RBP1.28□□□□□ -2.2
CD44-235ENST00000532339 S100A5P33763 92 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 RNASE10Q5GAN6 216 aaKnown RBP1.28□□□□□ -2.2
CD44-235ENST00000532339 LYRM7Q5U5X0 104 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 Q5XG85 94 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 HRCT1Q6UXD1 115 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 S100A16Q96FQ6 103 aaKnown RBP1.28□□□□□ -2.2
CD44-235ENST00000532339 OBSCN-AS1Q96MR7 158 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 AP1S3Q96PC3 154 aa1.28□□□□□ -2.2
CD44-235ENST00000532339 ERC2-IT1O76042 136 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 MGPP08493 103 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 GNG5P63218 68 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms