RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 MT1AP04731 61 aa-1.43□□□□□ -2.64
SMC4-223ENST00000493695 ETDBQ3ZM63 59 aa-1.43□□□□□ -2.64
SMC4-223ENST00000493695 AP4S1Q9Y587 144 aa-1.43□□□□□ -2.64
SMC4-223ENST00000493695 USP9YO00507 2555 aaPredicted RBP-1.43□□□□□ -2.64
SMC4-223ENST00000493695 ALKQ9UM73 1620 aa-1.44□□□□□ -2.64
SMC4-223ENST00000493695 TROQ12816 1431 aaPredicted RBP-1.44□□□□□ -2.64
SMC4-223ENST00000493695 FASNP49327 2511 aaKnown RBP-1.45□□□□□ -2.64
SMC4-223ENST00000493695 F8WEM9 126 aa-1.45□□□□□ -2.64
SMC4-223ENST00000493695 S100A10P60903 97 aa-1.45□□□□□ -2.64
SMC4-223ENST00000493695 LAMA1P25391 3075 aa-1.45□□□□□ -2.64
SMC4-223ENST00000493695 FANCAO15360 1455 aa-1.45□□□□□ -2.64
SMC4-223ENST00000493695 APOBP04114 4563 aaKnown RBP-1.45□□□□□ -2.64
SMC4-223ENST00000493695 D6R8Y8 96 aa-1.46□□□□□ -2.64
SMC4-223ENST00000493695 H0YGG7 62 aa-1.46□□□□□ -2.64
SMC4-223ENST00000493695 MUSTN1Q8IVN3 82 aa-1.46□□□□□ -2.64
SMC4-223ENST00000493695 UBE2D4Q9Y2X8 147 aa-1.46□□□□□ -2.64
SMC4-223ENST00000493695 VPS13BQ7Z7G8 4022 aa-1.47□□□□□ -2.64
SMC4-223ENST00000493695 LEPROTL1O95214 131 aa-1.47□□□□□ -2.64
SMC4-223ENST00000493695 LINC00032P0C843 101 aa-1.47□□□□□ -2.64
SMC4-223ENST00000493695 ZNF720Q7Z2F6 126 aa-1.47□□□□□ -2.64
SMC4-223ENST00000493695 ANK3Q12955 4377 aaKnown RBP-1.48□□□□□ -2.65
SMC4-223ENST00000493695 COX6B2Q6YFQ2 88 aa-1.48□□□□□ -2.65
SMC4-223ENST00000493695 TCEAL7Q9BRU2 100 aa-1.48□□□□□ -2.65
SMC4-223ENST00000493695 EPPK1P58107 5090 aaKnown RBP-1.48□□□□□ -2.65
SMC4-223ENST00000493695 CNTLNQ9NXG0 1405 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 PDE4DIPQ5VU43 2346 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 RGPD8O14715 1765 aaPredicted RBP-1.49□□□□□ -2.65
SMC4-223ENST00000493695 RGPD5Q99666 1765 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 PEG3Q9GZU2 1588 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 UQCRHLA0A096LP55 91 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 NMSQ5H8A3 153 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 DPY30Q9C005 99 aa-1.49□□□□□ -2.65
SMC4-223ENST00000493695 KALRNO60229 2985 aa-1.5□□□□□ -2.65
SMC4-223ENST00000493695 COX7BP24311 80 aa-1.5□□□□□ -2.65
SMC4-223ENST00000493695 MYH4Q9Y623 1939 aa-1.5□□□□□ -2.65
SMC4-223ENST00000493695 DOPEY1Q5JWR5 2465 aa-1.5□□□□□ -2.65
SMC4-223ENST00000493695 MYO18BQ8IUG5 2567 aa-1.51□□□□□ -2.65
SMC4-223ENST00000493695 C4AP0C0L4 1744 aa-1.51□□□□□ -2.65
SMC4-223ENST00000493695 C4BP0C0L5 1744 aa-1.51□□□□□ -2.65
SMC4-223ENST00000493695 COL5A1-AS1Q5SY13 56 aa-1.51□□□□□ -2.65
SMC4-223ENST00000493695 RGPD1P0DJD0 1748 aa-1.52□□□□□ -2.65
SMC4-223ENST00000493695 UBR3Q6ZT12 1888 aa-1.52□□□□□ -2.65
SMC4-223ENST00000493695 RBP2P50120 134 aa-1.52□□□□□ -2.65
SMC4-223ENST00000493695 ACBD7Q8N6N7 88 aa-1.52□□□□□ -2.65
SMC4-223ENST00000493695 ATP6V1G2-DDX39BF2Z307 99 aa-1.53□□□□□ -2.65
SMC4-223ENST00000493695 FAUP35544 74 aaKnown RBP-1.53□□□□□ -2.65
SMC4-223ENST00000493695 LRRC9Q6ZRR7 1453 aa-1.53□□□□□ -2.65
SMC4-223ENST00000493695 DNAH11Q96DT5 4516 aa-1.53□□□□□ -2.65
SMC4-223ENST00000493695 LRRC7Q96NW7 1537 aa-1.54□□□□□ -2.66
SMC4-223ENST00000493695 ATP10BO94823 1461 aa-1.54□□□□□ -2.66
SMC4-223ENST00000493695 NDUFA3O95167 84 aa-1.55□□□□□ -2.66
SMC4-223ENST00000493695 DSPP15924 2871 aaKnown RBP-1.55□□□□□ -2.66
SMC4-223ENST00000493695 TIAM2Q8IVF5 1701 aa-1.55□□□□□ -2.66
SMC4-223ENST00000493695 ANKRD26Q9UPS8 1709 aa-1.55□□□□□ -2.66
SMC4-223ENST00000493695 ATP7BP35670 1465 aa-1.56□□□□□ -2.66
SMC4-223ENST00000493695 GCN1Q92616 2671 aaKnown RBP-1.56□□□□□ -2.66
SMC4-223ENST00000493695 UBR1Q8IWV7 1749 aa-1.56□□□□□ -2.66
SMC4-223ENST00000493695 TNRC6CQ9HCJ0 1690 aaKnown RBP-1.56□□□□□ -2.66
SMC4-223ENST00000493695 MYO3AQ8NEV4 1616 aa-1.56□□□□□ -2.66
SMC4-223ENST00000493695 NCMAPQ5T1S8 102 aa-1.58□□□□□ -2.66
SMC4-223ENST00000493695 SUPT6HQ7KZ85 1726 aaKnown RBP-1.58□□□□□ -2.66
SMC4-223ENST00000493695 HMGN2P05204 90 aaKnown RBP-1.59□□□□□ -2.66
SMC4-223ENST00000493695 H3BNG1 76 aa-1.6□□□□□ -2.67
SMC4-223ENST00000493695 WDR87Q6ZQQ6 2873 aa-1.6□□□□□ -2.67
SMC4-223ENST00000493695 POLR1AO95602 1720 aaPredicted RBP-1.6□□□□□ -2.67
SMC4-223ENST00000493695 A0A1B0GUT8 65 aa-1.61□□□□□ -2.67
SMC4-223ENST00000493695 RPL38P63173 70 aaKnown RBP-1.61□□□□□ -2.67
SMC4-223ENST00000493695 NBEAQ8NFP9 2946 aa-1.61□□□□□ -2.67
SMC4-223ENST00000493695 ABCC10Q5T3U5 1492 aa-1.62□□□□□ -2.67
SMC4-223ENST00000493695 PLXNC1O60486 1568 aa-1.62□□□□□ -2.67
SMC4-223ENST00000493695 VPS8Q8N3P4 1428 aa-1.62□□□□□ -2.67
SMC4-223ENST00000493695 C9orf92A6NGG3 77 aa-1.62□□□□□ -2.67
SMC4-223ENST00000493695 RYR3Q15413 4870 aa-1.62□□□□□ -2.67
SMC4-223ENST00000493695 BAZ1AQ9NRL2 1556 aaPredicted RBP-1.63□□□□□ -2.67
SMC4-223ENST00000493695 CEP162Q5TB80 1403 aa-1.63□□□□□ -2.67
SMC4-223ENST00000493695 PLGLAQ15195 96 aa-1.63□□□□□ -2.67
SMC4-223ENST00000493695 GAFA1Q96PS6 74 aa-1.63□□□□□ -2.67
SMC4-223ENST00000493695 NEXMIFQ5QGS0 1516 aa-1.63□□□□□ -2.67
SMC4-223ENST00000493695 M0R143 59 aa-1.64□□□□□ -2.67
SMC4-223ENST00000493695 CEP170BQ9Y4F5 1589 aaPredicted RBP-1.64□□□□□ -2.67
SMC4-223ENST00000493695 DNAH2Q9P225 4427 aa-1.65□□□□□ -2.67
SMC4-223ENST00000493695 USP32Q8NFA0 1604 aa-1.65□□□□□ -2.67
SMC4-223ENST00000493695 UTP20O75691 2785 aaKnown RBP-1.65□□□□□ -2.67
SMC4-223ENST00000493695 GYPAP02724 150 aa-1.65□□□□□ -2.67
SMC4-223ENST00000493695 C20orf78Q9BR46 151 aa-1.65□□□□□ -2.67
SMC4-223ENST00000493695 WIZO95785 1651 aa-1.65□□□□□ -2.67
SMC4-223ENST00000493695 BIRC6Q9NR09 4857 aa-1.66□□□□□ -2.67
SMC4-223ENST00000493695 IQCF6A8MYZ5 107 aa-1.66□□□□□ -2.68
SMC4-223ENST00000493695 NESP48681 1621 aa-1.66□□□□□ -2.68
SMC4-223ENST00000493695 DNAH1Q9P2D7 4330 aa-1.67□□□□□ -2.68
SMC4-223ENST00000493695 MTORP42345 2549 aa-1.67□□□□□ -2.68
SMC4-223ENST00000493695 AKAP12Q02952 1782 aa-1.67□□□□□ -2.68
SMC4-223ENST00000493695 SCN11AQ9UI33 1791 aa-1.67□□□□□ -2.68
SMC4-223ENST00000493695 NWD1Q149M9 1564 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 SMIM11AP58511 58 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 LTN1O94822 1766 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 MGAM2Q2M2H8 2515 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 LRRK2Q5S007 2527 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 HYDINQ4G0P3 5121 aa-1.68□□□□□ -2.68
SMC4-223ENST00000493695 TMEM131LA2VDJ0 1609 aa-1.69□□□□□ -2.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms