RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 RGPD5Q99666 1765 aa-0.04□□□□□ -2.42
SMC4-215ENST00000484799 C9orf62Q8N4C0 152 aa-0.04□□□□□ -2.42
SMC4-215ENST00000484799 CDKN2A-AS1Q9UH64 79 aa-0.04□□□□□ -2.42
SMC4-215ENST00000484799 COL6A3P12111 3177 aa-0.04□□□□□ -2.42
SMC4-215ENST00000484799 SUPT6HQ7KZ85 1726 aaKnown RBP-0.04□□□□□ -2.42
SMC4-215ENST00000484799 LRP2P98164 4655 aa-0.05□□□□□ -2.42
SMC4-215ENST00000484799 RGPD1P0DJD0 1748 aa-0.05□□□□□ -2.42
SMC4-215ENST00000484799 TIAM2Q8IVF5 1701 aa-0.05□□□□□ -2.42
SMC4-215ENST00000484799 TMEM131LA2VDJ0 1609 aa-0.05□□□□□ -2.42
SMC4-215ENST00000484799 SPRR2BP35325 72 aa-0.06□□□□□ -2.42
SMC4-215ENST00000484799 HEPN1Q6WQI6 88 aa-0.06□□□□□ -2.42
SMC4-215ENST00000484799 COX6B2Q6YFQ2 88 aa-0.06□□□□□ -2.42
SMC4-215ENST00000484799 GAFA1Q96PS6 74 aa-0.06□□□□□ -2.42
SMC4-215ENST00000484799 NDUFB1O75438 58 aa-0.07□□□□□ -2.42
SMC4-215ENST00000484799 DSTQ03001 7570 aaKnown RBP-0.07□□□□□ -2.42
SMC4-215ENST00000484799 STAB1Q9NY15 2570 aa-0.07□□□□□ -2.42
SMC4-215ENST00000484799 LTN1O94822 1766 aa-0.08□□□□□ -2.42
SMC4-215ENST00000484799 KANTRA0A1W2PQU2 76 aa-0.08□□□□□ -2.42
SMC4-215ENST00000484799 CEBPZOSA8MTT3 80 aa-0.08□□□□□ -2.42
SMC4-215ENST00000484799 STAB2Q8WWQ8 2551 aa-0.08□□□□□ -2.42
SMC4-215ENST00000484799 KNL1Q8NG31 2342 aa-0.09□□□□□ -2.42
SMC4-215ENST00000484799 URB2Q14146 1524 aaKnown RBP-0.09□□□□□ -2.42
SMC4-215ENST00000484799 POLR1AO95602 1720 aaPredicted RBP-0.1□□□□□ -2.42
SMC4-215ENST00000484799 NBEAL1Q6ZS30 2694 aa-0.11□□□□□ -2.43
SMC4-215ENST00000484799 TRAV21A0A0B4J279 112 aa-0.11□□□□□ -2.43
SMC4-215ENST00000484799 DEFB135Q30KP9 77 aa-0.11□□□□□ -2.43
SMC4-215ENST00000484799 WFDC9Q8NEX5 89 aa-0.11□□□□□ -2.43
SMC4-215ENST00000484799 PCNX1Q96RV3 2341 aa-0.12□□□□□ -2.43
SMC4-215ENST00000484799 AKAP13Q12802 2813 aa-0.12□□□□□ -2.43
SMC4-215ENST00000484799 WFDC13Q8IUB5 93 aa-0.12□□□□□ -2.43
SMC4-215ENST00000484799 MED14O60244 1454 aa-0.12□□□□□ -2.43
SMC4-215ENST00000484799 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.12□□□□□ -2.43
SMC4-215ENST00000484799 PDZD2O15018 2839 aa-0.12□□□□□ -2.43
SMC4-215ENST00000484799 USP32Q8NFA0 1604 aa-0.13□□□□□ -2.43
SMC4-215ENST00000484799 MAGI3Q5TCQ9 1506 aa-0.13□□□□□ -2.43
SMC4-215ENST00000484799 TDRG1Q3Y452 100 aa-0.14□□□□□ -2.43
SMC4-215ENST00000484799 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.14□□□□□ -2.43
SMC4-215ENST00000484799 CCDC18Q5T9S5 1454 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 LELP1Q5T871 98 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 S100A13Q99584 98 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 HECTD1Q9ULT8 2610 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 CREBBPQ92793 2442 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 PDE4DIPQ5VU43 2346 aa-0.15□□□□□ -2.43
SMC4-215ENST00000484799 CCDC88BA6NC98 1476 aa-0.16□□□□□ -2.43
SMC4-215ENST00000484799 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.16□□□□□ -2.43
SMC4-215ENST00000484799 ADIRFQ15847 76 aa-0.16□□□□□ -2.44
SMC4-215ENST00000484799 ST20Q9HBF5 79 aa-0.16□□□□□ -2.44
SMC4-215ENST00000484799 NWD1Q149M9 1564 aa-0.16□□□□□ -2.44
SMC4-215ENST00000484799 NCOA2Q15596 1464 aa-0.16□□□□□ -2.44
SMC4-215ENST00000484799 PIK3C2BO00750 1634 aa-0.16□□□□□ -2.44
SMC4-215ENST00000484799 PRRC2CQ9Y520 2896 aaKnown RBP-0.17□□□□□ -2.44
SMC4-215ENST00000484799 ATP5EP2Q5VTU8 51 aa-0.17□□□□□ -2.44
SMC4-215ENST00000484799 NESP48681 1621 aa-0.17□□□□□ -2.44
SMC4-215ENST00000484799 TGP01266 2768 aa-0.17□□□□□ -2.44
SMC4-215ENST00000484799 DOT1LQ8TEK3 1739 aa-0.18□□□□□ -2.44
SMC4-215ENST00000484799 SRRM2Q9UQ35 2752 aaKnown RBP-0.18□□□□□ -2.44
SMC4-215ENST00000484799 CICQ96RK0 1608 aaPredicted RBP-0.18□□□□□ -2.44
SMC4-215ENST00000484799 PTPN23Q9H3S7 1636 aa-0.18□□□□□ -2.44
SMC4-215ENST00000484799 SETD2Q9BYW2 2564 aaPredicted RBP-0.18□□□□□ -2.44
SMC4-215ENST00000484799 C4AP0C0L4 1744 aa-0.18□□□□□ -2.44
SMC4-215ENST00000484799 C4BP0C0L5 1744 aa-0.18□□□□□ -2.44
SMC4-215ENST00000484799 NDUFA3O95167 84 aa-0.19□□□□□ -2.44
SMC4-215ENST00000484799 DCAF1Q9Y4B6 1507 aa-0.19□□□□□ -2.44
SMC4-215ENST00000484799 ARFGEF2Q9Y6D5 1785 aa-0.19□□□□□ -2.44
SMC4-215ENST00000484799 ADAMTS12P58397 1594 aa-0.19□□□□□ -2.44
SMC4-215ENST00000484799 NBASA2RRP1 2371 aa-0.2□□□□□ -2.44
SMC4-215ENST00000484799 HMGA1P17096 107 aaKnown RBP-0.2□□□□□ -2.44
SMC4-215ENST00000484799 ZNF831Q5JPB2 1677 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 PKHD1P08F94 4074 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 ABCC1P33527 1531 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 KDM5DQ9BY66 1539 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 UMAD1C9J7I0 102 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 IFI27P40305 119 aaPredicted RBP-0.21□□□□□ -2.44
SMC4-215ENST00000484799 DIP2BQ9P265 1576 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 LRP1BQ9NZR2 4599 aa-0.21□□□□□ -2.44
SMC4-215ENST00000484799 H0YGG7 62 aa-0.22□□□□□ -2.44
SMC4-215ENST00000484799 C3orf79P0CE67 100 aa-0.22□□□□□ -2.44
SMC4-215ENST00000484799 DEFB121Q5J5C9 76 aa-0.22□□□□□ -2.44
SMC4-215ENST00000484799 MUC2Q02817 5179 aa-0.22□□□□□ -2.45
SMC4-215ENST00000484799 ERVK-7P63135 1459 aa-0.22□□□□□ -2.45
SMC4-215ENST00000484799 KRTAP6-1Q3LI64 71 aa-0.23□□□□□ -2.45
SMC4-215ENST00000484799 NF1P21359 2839 aa-0.23□□□□□ -2.45
SMC4-215ENST00000484799 PRO3102Q9H379 93 aa-0.24□□□□□ -2.45
SMC4-215ENST00000484799 ARHGAP35Q9NRY4 1499 aa-0.24□□□□□ -2.45
SMC4-215ENST00000484799 CFAP74Q9C0B2 1584 aa-0.24□□□□□ -2.45
SMC4-215ENST00000484799 SCN11AQ9UI33 1791 aa-0.24□□□□□ -2.45
SMC4-215ENST00000484799 TNRC18O15417 2968 aaPredicted RBP-0.24□□□□□ -2.45
SMC4-215ENST00000484799 LCE6AA0A183 80 aa-0.25□□□□□ -2.45
SMC4-215ENST00000484799 PLXNC1O60486 1568 aa-0.25□□□□□ -2.45
SMC4-215ENST00000484799 CFAP43Q8NDM7 1665 aa-0.25□□□□□ -2.45
SMC4-215ENST00000484799 DSPP15924 2871 aaKnown RBP-0.25□□□□□ -2.45
SMC4-215ENST00000484799 FLGP20930 4061 aaPredicted RBP-0.25□□□□□ -2.45
SMC4-215ENST00000484799 SPTBN4Q9H254 2564 aa-0.26□□□□□ -2.45
SMC4-215ENST00000484799 WIZO95785 1651 aa-0.26□□□□□ -2.45
SMC4-215ENST00000484799 A0A087WXM4 84 aa-0.26□□□□□ -2.45
SMC4-215ENST00000484799 IFI6P09912 130 aa-0.26□□□□□ -2.45
SMC4-215ENST00000484799 SPRR2AP35326 72 aa-0.26□□□□□ -2.45
SMC4-215ENST00000484799 H3BUT2 72 aa-0.27□□□□□ -2.45
SMC4-215ENST00000484799 DEPDC5O75140 1603 aa-0.27□□□□□ -2.45
SMC4-215ENST00000484799 PKD1P98161 4303 aa-0.28□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms