RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 AEBP2Q6ZN18 517 aaPredicted RBP25.82■■□□□ 1.72
SMC4-215ENST00000484799 CHIC1Q5VXU3 224 aa25.01■■□□□ 1.59
SMC4-215ENST00000484799 SENP3Q9H4L4 574 aaPredicted RBP22.17■■□□□ 1.14
SMC4-215ENST00000484799 PHF23Q9BUL5 403 aaPredicted RBP21.91■■□□□ 1.1
SMC4-215ENST00000484799 FOXD1Q16676 465 aa20.5■□□□□ 0.87
SMC4-215ENST00000484799 PLPPR3Q6T4P5 718 aa20.27■□□□□ 0.84
SMC4-215ENST00000484799 ADRA2BP18089 450 aa19.48■□□□□ 0.71
SMC4-215ENST00000484799 PPP6R1Q9UPN7 881 aa19.43■□□□□ 0.7
SMC4-215ENST00000484799 PIAS4Q8N2W9 510 aaPredicted RBP19.37■□□□□ 0.69
SMC4-215ENST00000484799 MSH5O43196 834 aa19.17■□□□□ 0.66
SMC4-215ENST00000484799 SCAF1Q9H7N4 1312 aaKnown RBP18.03■□□□□ 0.48
SMC4-215ENST00000484799 POTEDQ86YR6 584 aa17.92■□□□□ 0.46
SMC4-215ENST00000484799 PPP4R3CPQ6ZMV5 832 aa17.79■□□□□ 0.44
SMC4-215ENST00000484799 MAPK8IP2Q13387 824 aaPredicted RBP17.75■□□□□ 0.43
SMC4-215ENST00000484799 DMRT2Q9Y5R5 561 aa17.57■□□□□ 0.4
SMC4-215ENST00000484799 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
SMC4-215ENST00000484799 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
SMC4-215ENST00000484799 RNF216Q9NWF9 866 aaPredicted RBP17.1■□□□□ 0.33
SMC4-215ENST00000484799 DCAF8L1A6NGE4 600 aa17.06■□□□□ 0.32
SMC4-215ENST00000484799 HOXD11P31277 338 aaPredicted RBP17.04■□□□□ 0.32
SMC4-215ENST00000484799 KCNA4P22459 653 aa16.95■□□□□ 0.3
SMC4-215ENST00000484799 NPM3O75607 178 aaKnown RBP16.92■□□□□ 0.3
SMC4-215ENST00000484799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.46■□□□□ 0.232e-9■□□□□ 8.6
SMC4-215ENST00000484799 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
SMC4-215ENST00000484799 RNF39Q9H2S5 420 aa16.28■□□□□ 0.2
SMC4-215ENST00000484799 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
SMC4-215ENST00000484799 SLC4A1APQ9BWU0 796 aaKnown RBP16.19■□□□□ 0.18
SMC4-215ENST00000484799 C1QBPQ07021 282 aaKnown RBP16.17■□□□□ 0.18
SMC4-215ENST00000484799 SLC4A2P04920 1241 aa15.99■□□□□ 0.15
SMC4-215ENST00000484799 U3KPZ7 1027 aaPredicted RBP15.94■□□□□ 0.14
SMC4-215ENST00000484799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
SMC4-215ENST00000484799 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
SMC4-215ENST00000484799 APLP2Q06481 763 aa15.83■□□□□ 0.12
SMC4-215ENST00000484799 CAPN15O75808 1086 aa15.75■□□□□ 0.11
SMC4-215ENST00000484799 FOXD4L1Q9NU39 408 aa15.75■□□□□ 0.11
SMC4-215ENST00000484799 SAMD1Q6SPF0 538 aaPredicted RBP15.73■□□□□ 0.11
SMC4-215ENST00000484799 MYCNP04198 464 aaPredicted RBP15.72■□□□□ 0.11
SMC4-215ENST00000484799 SPINK5Q9NQ38 1064 aaPredicted RBP15.62■□□□□ 0.09
SMC4-215ENST00000484799 TRHP20396 242 aaPredicted RBP15.59■□□□□ 0.09
SMC4-215ENST00000484799 ZNF219Q9P2Y4 722 aaPredicted RBP15.54■□□□□ 0.08
SMC4-215ENST00000484799 ZBTB22O15209 634 aa15.47■□□□□ 0.07
SMC4-215ENST00000484799 DSG3P32926 999 aa15.4■□□□□ 0.06
SMC4-215ENST00000484799 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
SMC4-215ENST00000484799 ABCB7O75027 752 aa15.34■□□□□ 0.05
SMC4-215ENST00000484799 ATXN8OSP0DMR3 200 aa15.24■□□□□ 0.03
SMC4-215ENST00000484799 POLA2Q14181 598 aa15.21■□□□□ 0.03
SMC4-215ENST00000484799 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
SMC4-215ENST00000484799 ATF5Q9Y2D1 282 aaPredicted RBP15.19■□□□□ 0.02
SMC4-215ENST00000484799 ZBTB12Q9Y330 459 aaPredicted RBP15□□□□□ -0.01
SMC4-215ENST00000484799 FBLN2P98095 1184 aa14.84□□□□□ -0.03
SMC4-215ENST00000484799 RBM42Q9BTD8 480 aaKnown RBP14.83□□□□□ -0.04
SMC4-215ENST00000484799 OSCARQ8IYS5 282 aa14.63□□□□□ -0.07
SMC4-215ENST00000484799 AKT1S1Q96B36 256 aa14.52□□□□□ -0.09
SMC4-215ENST00000484799 MKRN4PQ13434 485 aaPredicted RBP14.5□□□□□ -0.09
SMC4-215ENST00000484799 SPDYE2BA6NHP3 402 aa14.49□□□□□ -0.09
SMC4-215ENST00000484799 SPDYE6P0CI01 402 aa14.49□□□□□ -0.09
SMC4-215ENST00000484799 SPDYE2Q495Y8 402 aa14.49□□□□□ -0.09
SMC4-215ENST00000484799 ZNF692Q9BU19 519 aaPredicted RBP14.46□□□□□ -0.09
SMC4-215ENST00000484799 REM2Q8IYK8 340 aaPredicted RBP14.35□□□□□ -0.11
SMC4-215ENST00000484799 CHRDL2Q6WN34 429 aa14.27□□□□□ -0.13
SMC4-215ENST00000484799 SSUH2Q9Y2M2 353 aa14.22□□□□□ -0.13
SMC4-215ENST00000484799 CLEC11AQ9Y240 323 aa14.21□□□□□ -0.13
SMC4-215ENST00000484799 SPDYE4A6NLX3 237 aa14.2□□□□□ -0.14
SMC4-215ENST00000484799 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
SMC4-215ENST00000484799 POTEHQ6S545 545 aa14.19□□□□□ -0.14
SMC4-215ENST00000484799 SPDYE1Q8NFV5 336 aaPredicted RBP14.19□□□□□ -0.14
SMC4-215ENST00000484799 PITPNM1O00562 1244 aa14.15□□□□□ -0.14
SMC4-215ENST00000484799 PRR29P0C7W0 189 aa14.02□□□□□ -0.17
SMC4-215ENST00000484799 STAG3Q9UJ98 1225 aa13.99□□□□□ -0.17
SMC4-215ENST00000484799 PIP4P2Q8N4L2 257 aa13.98□□□□□ -0.17
SMC4-215ENST00000484799 FXR2P51116 673 aaKnown RBP eCLIP13.93□□□□□ -0.18
SMC4-215ENST00000484799 FKBP8Q14318 412 aa13.89□□□□□ -0.19
SMC4-215ENST00000484799 PRKAR2AP13861 404 aaKnown RBP13.88□□□□□ -0.19
SMC4-215ENST00000484799 HAX1O00165 279 aa13.78□□□□□ -0.2
SMC4-215ENST00000484799 CHADLQ6NUI6 762 aa13.76□□□□□ -0.21
SMC4-215ENST00000484799 PROM2Q8N271 834 aa13.7□□□□□ -0.22
SMC4-215ENST00000484799 PLEKHG5O94827 1062 aa13.69□□□□□ -0.22
SMC4-215ENST00000484799 FARP1Q9Y4F1 1045 aaPredicted RBP13.62□□□□□ -0.23
SMC4-215ENST00000484799 MIER1Q8N108 512 aa13.61□□□□□ -0.23
SMC4-215ENST00000484799 CREBZFQ9NS37 354 aa13.59□□□□□ -0.23
SMC4-215ENST00000484799 FBXO3Q9UK99 471 aa13.59□□□□□ -0.23
SMC4-215ENST00000484799 NPM1P06748 294 aaKnown RBP eCLIP13.56□□□□□ -0.24
SMC4-215ENST00000484799 PLCD3Q8N3E9 789 aa13.56□□□□□ -0.24
SMC4-215ENST00000484799 SP7Q8TDD2 431 aaPredicted RBP13.49□□□□□ -0.25
SMC4-215ENST00000484799 C19orf67A6NJJ6 358 aa13.47□□□□□ -0.25
SMC4-215ENST00000484799 PAK3O75914 559 aaPredicted RBP13.47□□□□□ -0.25
SMC4-215ENST00000484799 CD44P16070 742 aaKnown RBP13.46□□□□□ -0.25
SMC4-215ENST00000484799 ZBTB47Q9UFB7 747 aaPredicted RBP13.44□□□□□ -0.26
SMC4-215ENST00000484799 EVX2Q03828 476 aa13.39□□□□□ -0.27
SMC4-215ENST00000484799 ZRANB1Q9UGI0 708 aa13.37□□□□□ -0.27
SMC4-215ENST00000484799 KLHL34Q8N239 644 aa13.33□□□□□ -0.28
SMC4-215ENST00000484799 MNX1P50219 401 aaPredicted RBP13.32□□□□□ -0.28
SMC4-215ENST00000484799 VASPP50552 380 aaPredicted RBP13.28□□□□□ -0.28
SMC4-215ENST00000484799 CLCN6P51797 869 aa13.27□□□□□ -0.29
SMC4-215ENST00000484799 TSPYL2Q9H2G4 693 aaPredicted RBP13.27□□□□□ -0.29
SMC4-215ENST00000484799 GABBR2O75899 941 aa13.22□□□□□ -0.29
SMC4-215ENST00000484799 ZNF579Q8NAF0 562 aaKnown RBP13.19□□□□□ -0.3
SMC4-215ENST00000484799 FAM212AQ96EL1 285 aa13.15□□□□□ -0.3
SMC4-215ENST00000484799 DCAF8Q5TAQ9 597 aa13.14□□□□□ -0.31
SMC4-215ENST00000484799 RASEFQ8IZ41 740 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms