RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 SPRR2DP22532 72 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 DEFA5Q01523 94 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 S100A13Q99584 98 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 HECTD4Q9Y4D8 3996 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 TRANK1O15050 2925 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.02□□□□□ -2.412e-8■■■■■ 32.1
PTPN4-205ENST00000433888 DIP2BQ9P265 1576 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 USP32Q8NFA0 1604 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 MAP3K4Q9Y6R4 1608 aa0.02□□□□□ -2.41
PTPN4-205ENST00000433888 PTPN13Q12923 2485 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 A0A087WXM4 84 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 CCL22O00626 93 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 PRRC2CQ9Y520 2896 aaKnown RBP0.01□□□□□ -2.41
PTPN4-205ENST00000433888 MED14O60244 1454 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 CCDC18Q5T9S5 1454 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 RB1CC1Q8TDY2 1594 aa0.01□□□□□ -2.41
PTPN4-205ENST00000433888 RPL38P63173 70 aaKnown RBP0□□□□□ -2.41
PTPN4-205ENST00000433888 LRRC9Q6ZRR7 1453 aa0□□□□□ -2.41
PTPN4-205ENST00000433888 PREX1Q8TCU6 1659 aa0□□□□□ -2.41
PTPN4-205ENST00000433888 AKAP13Q12802 2813 aa-0□□□□□ -2.41
PTPN4-205ENST00000433888 SPTA1P02549 2419 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 C4AP0C0L4 1744 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 C4BP0C0L5 1744 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 PIK3C2BO00750 1634 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 UMAD1C9J7I0 102 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 SMIM13P0DJ93 91 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 DEFB135Q30KP9 77 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 BVES-AS1Q5T3Y7 98 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 LYSTQ99698 3801 aa-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 MAP1BP46821 2468 aaKnown RBP-0.01□□□□□ -2.41
PTPN4-205ENST00000433888 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.02□□□□□ -2.41
PTPN4-205ENST00000433888 ERVK-7P63135 1459 aa-0.02□□□□□ -2.41
PTPN4-205ENST00000433888 TENM2Q9NT68 2774 aa-0.02□□□□□ -2.41
PTPN4-205ENST00000433888 SCN11AQ9UI33 1791 aa-0.02□□□□□ -2.41
PTPN4-205ENST00000433888 LRP2P98164 4655 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 ARFGEF2Q9Y6D5 1785 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 CHD8Q9HCK8 2581 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 ZANQ9Y493 2812 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 WNK1Q9H4A3 2382 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 MUC12Q9UKN1 5478 aa-0.03□□□□□ -2.41
PTPN4-205ENST00000433888 NDUFB1O75438 58 aa-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 IFI27P40305 119 aaPredicted RBP-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 NREPQ16612 68 aa-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 URB2Q14146 1524 aaKnown RBP-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 FLNBO75369 2602 aaKnown RBP-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 FLNAP21333 2647 aaKnown RBP-0.04□□□□□ -2.42
PTPN4-205ENST00000433888 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.05□□□□□ -2.42
PTPN4-205ENST00000433888 DCAF1Q9Y4B6 1507 aa-0.05□□□□□ -2.42
PTPN4-205ENST00000433888 TNRC18O15417 2968 aaPredicted RBP-0.05□□□□□ -2.42
PTPN4-205ENST00000433888 TIAM2Q8IVF5 1701 aa-0.05□□□□□ -2.42
PTPN4-205ENST00000433888 ARHGAP35Q9NRY4 1499 aa-0.05□□□□□ -2.42
PTPN4-205ENST00000433888 NWD1Q149M9 1564 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 RGPD8O14715 1765 aaPredicted RBP-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 RGPD5Q99666 1765 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 FAT1Q14517 4588 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 DSTQ03001 7570 aaKnown RBP-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 RICTORQ6R327 1708 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 LINC00158P58513 81 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 DEFB121Q5J5C9 76 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 KNL1Q8NG31 2342 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 NESP48681 1621 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 COL6A3P12111 3177 aa-0.06□□□□□ -2.42
PTPN4-205ENST00000433888 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 PLCH1Q4KWH8 1693 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 H3BVH4 76 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 NDUFA4O00483 81 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 PRO3102Q9H379 93 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 LRP1BQ9NZR2 4599 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 EP300Q09472 2414 aaPredicted RBP-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 SVEP1Q4LDE5 3571 aa-0.07□□□□□ -2.42
PTPN4-205ENST00000433888 KMT2CQ8NEZ4 4911 aaKnown RBP-0.08□□□□□ -2.42
PTPN4-205ENST00000433888 C18orf32Q8TCD1 76 aa-0.08□□□□□ -2.42
PTPN4-205ENST00000433888 APC2O95996 2303 aa-0.09□□□□□ -2.42
PTPN4-205ENST00000433888 CNOT1A5YKK6 2376 aaKnown RBP-0.09□□□□□ -2.42
PTPN4-205ENST00000433888 DSPP15924 2871 aaKnown RBP-0.09□□□□□ -2.42
PTPN4-205ENST00000433888 DDX60LQ5H9U9 1706 aaKnown RBP-0.1□□□□□ -2.42
PTPN4-205ENST00000433888 ATP5EP2Q5VTU8 51 aa-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 KDM5DQ9BY66 1539 aa-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 HERC1Q15751 4861 aa-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 CICQ96RK0 1608 aaPredicted RBP-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 MUC2Q02817 5179 aa-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 STAB1Q9NY15 2570 aa-0.1□□□□□ -2.43
PTPN4-205ENST00000433888 ACANP16112 2415 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 FLGP20930 4061 aaPredicted RBP-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 CFAP43Q8NDM7 1665 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 H0YGG7 62 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 HMGA1P17096 107 aaKnown RBP-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 SPRR2BP35325 72 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 COX6B2Q6YFQ2 88 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 LRRIQ1Q96JM4 1722 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 PKD1P98161 4303 aa-0.11□□□□□ -2.43
PTPN4-205ENST00000433888 MAGI3Q5TCQ9 1506 aa-0.12□□□□□ -2.43
PTPN4-205ENST00000433888 PKHD1P08F94 4074 aa-0.12□□□□□ -2.43
PTPN4-205ENST00000433888 H0YAA0 97 aa-0.12□□□□□ -2.43
PTPN4-205ENST00000433888 ADAMTS12P58397 1594 aa-0.12□□□□□ -2.43
PTPN4-205ENST00000433888 TJP1Q07157 1748 aa-0.13□□□□□ -2.43
PTPN4-205ENST00000433888 PDZD2O15018 2839 aa-0.13□□□□□ -2.43
PTPN4-205ENST00000433888 STARD9Q9P2P6 4700 aa-0.13□□□□□ -2.43
PTPN4-205ENST00000433888 NBEAL1Q6ZS30 2694 aa-0.13□□□□□ -2.43
PTPN4-205ENST00000433888 C3orf79P0CE67 100 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms