RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 A8MWP4 228 aa5.93□□□□□ -1.46
USF3-201ENST00000316407 EIF4EBP3O60516 100 aaPredicted RBP5.93□□□□□ -1.46
USF3-201ENST00000316407 XIRP2A4UGR9 3374 aa5.93□□□□□ -1.46
USF3-201ENST00000316407 WIPF1O43516 503 aa5.92□□□□□ -1.46
USF3-201ENST00000316407 MAST4O15021 2626 aa5.91□□□□□ -1.46
USF3-201ENST00000316407 A0A1B0GW54 56 aa5.9□□□□□ -1.47
USF3-201ENST00000316407 Q6ZRP5 223 aa5.9□□□□□ -1.47
USF3-201ENST00000316407 GCN1Q92616 2671 aaKnown RBP5.89□□□□□ -1.47
USF3-201ENST00000316407 A0A0C4DFX4 3053 aa5.89□□□□□ -1.47
USF3-201ENST00000316407 NBEAL1Q6ZS30 2694 aa5.89□□□□□ -1.47
USF3-201ENST00000316407 OBSCN-AS1Q96MR7 158 aa5.88□□□□□ -1.47
USF3-201ENST00000316407 CFAP54Q96N23 3096 aa5.88□□□□□ -1.47
USF3-201ENST00000316407 DSCR10P59022 87 aa5.88□□□□□ -1.47
USF3-201ENST00000316407 LINC01554Q52M75 96 aa5.87□□□□□ -1.47
USF3-201ENST00000316407 LAMA2P24043 3122 aaKnown RBP5.87□□□□□ -1.47
USF3-201ENST00000316407 CDC42SE1Q9NRR8 79 aa5.87□□□□□ -1.47
USF3-201ENST00000316407 FLNAP21333 2647 aaKnown RBP5.87□□□□□ -1.47
USF3-201ENST00000316407 KRTAP10-9P60411 292 aa5.86□□□□□ -1.47
USF3-201ENST00000316407 CHD6Q8TD26 2715 aa5.86□□□□□ -1.47
USF3-201ENST00000316407 ITPR3Q14573 2671 aa5.86□□□□□ -1.47
USF3-201ENST00000316407 A0A1W2PPR1 153 aa5.86□□□□□ -1.47
USF3-201ENST00000316407 NOTCH1P46531 2555 aa5.85□□□□□ -1.47
USF3-201ENST00000316407 C9orf92A6NGG3 77 aa5.85□□□□□ -1.47
USF3-201ENST00000316407 C16orf90A8MZG2 172 aa5.85□□□□□ -1.47
USF3-201ENST00000316407 IGFL1Q6UW32 110 aa5.85□□□□□ -1.47
USF3-201ENST00000316407 TYMSOSQ8TAI1 123 aa5.84□□□□□ -1.47
USF3-201ENST00000316407 Q8N1X5 172 aa5.84□□□□□ -1.47
USF3-201ENST00000316407 PRAC1Q96KF2 57 aa5.84□□□□□ -1.47
USF3-201ENST00000316407 MRPL34Q9BQ48 92 aaKnown RBP5.84□□□□□ -1.47
USF3-201ENST00000316407 FAM229AH3BQW9 127 aa5.84□□□□□ -1.47
USF3-201ENST00000316407 FAM229BQ4G0N7 80 aa5.84□□□□□ -1.47
USF3-201ENST00000316407 CFAP46Q8IYW2 2715 aa5.83□□□□□ -1.48
USF3-201ENST00000316407 LUZP6Q538Z0 58 aa5.82□□□□□ -1.48
USF3-201ENST00000316407 MAP1AP78559 2803 aaPredicted RBP5.82□□□□□ -1.48
USF3-201ENST00000316407 Q1T7F1 81 aa5.81□□□□□ -1.48
USF3-201ENST00000316407 DMBT1Q9UGM3 2413 aaPredicted RBP5.8□□□□□ -1.48
USF3-201ENST00000316407 C8orf17Q9NRJ1 99 aa5.8□□□□□ -1.48
USF3-201ENST00000316407 GVQW2A0A096LPI5 108 aaPredicted RBP5.8□□□□□ -1.48
USF3-201ENST00000316407 RTL8CO15255 209 aa5.8□□□□□ -1.48
USF3-201ENST00000316407 COL6A5A8TX70 2615 aa5.79□□□□□ -1.48
USF3-201ENST00000316407 A0A1B0GVX0 72 aa5.79□□□□□ -1.48
USF3-201ENST00000316407 ANAPC11Q9NYG5 84 aa5.79□□□□□ -1.48
USF3-201ENST00000316407 Q8N377 158 aa5.78□□□□□ -1.48
USF3-201ENST00000316407 Q5XG85 94 aa5.77□□□□□ -1.49
USF3-201ENST00000316407 STAB1Q9NY15 2570 aa5.77□□□□□ -1.49
USF3-201ENST00000316407 FAM104AQ969W3 186 aa5.77□□□□□ -1.49
USF3-201ENST00000316407 LINC00528Q8N1L1 170 aa5.76□□□□□ -1.49
USF3-201ENST00000316407 CYSTM1Q9H1C7 97 aa5.76□□□□□ -1.49
USF3-201ENST00000316407 KCNQ1DNQ9H478 68 aa5.76□□□□□ -1.49
USF3-201ENST00000316407 IGLV5-48A0A075B6I7 105 aa5.75□□□□□ -1.49
USF3-201ENST00000316407 PRO3102Q9H379 93 aa5.75□□□□□ -1.49
USF3-201ENST00000316407 C16orf95Q9H693 158 aa5.75□□□□□ -1.49
USF3-201ENST00000316407 LINC00588Q9Y4M8 146 aa5.75□□□□□ -1.49
USF3-201ENST00000316407 UNC79Q9P2D8 2635 aa5.74□□□□□ -1.49
USF3-201ENST00000316407 IGLV1-50A0A075B6I6 118 aa5.74□□□□□ -1.49
USF3-201ENST00000316407 CSAG1Q6PB30 78 aa5.74□□□□□ -1.49
USF3-201ENST00000316407 PRR26Q8N8Z3 221 aa5.74□□□□□ -1.49
USF3-201ENST00000316407 ZNF575Q86XF7 245 aa5.74□□□□□ -1.49
USF3-201ENST00000316407 FREM2Q5SZK8 3169 aa5.73□□□□□ -1.49
USF3-201ENST00000316407 SPANXA2-OT1Q8N9U9 137 aa5.73□□□□□ -1.49
USF3-201ENST00000316407 Q8NAQ8 132 aa5.72□□□□□ -1.49
USF3-201ENST00000316407 FLNBO75369 2602 aaKnown RBP5.72□□□□□ -1.49
USF3-201ENST00000316407 C15orf56Q8N910 161 aa5.72□□□□□ -1.49
USF3-201ENST00000316407 OCR1Q9BZK8 76 aa5.71□□□□□ -1.49
USF3-201ENST00000316407 DNAH10OSP0CZ25 163 aa5.71□□□□□ -1.5
USF3-201ENST00000316407 Q75L30 129 aa5.71□□□□□ -1.5
USF3-201ENST00000316407 STAB2Q8WWQ8 2551 aa5.71□□□□□ -1.5
USF3-201ENST00000316407 C9orf163Q8N9P6 203 aa5.7□□□□□ -1.5
USF3-201ENST00000316407 COX6B2Q6YFQ2 88 aa5.7□□□□□ -1.5
USF3-201ENST00000316407 FP248Q71RG6 208 aaPredicted RBP5.69□□□□□ -1.5
USF3-201ENST00000316407 TEX15Q9BXT5 2789 aa5.68□□□□□ -1.5
USF3-201ENST00000316407 HELZ2Q9BYK8 2649 aaKnown RBP5.68□□□□□ -1.5
USF3-201ENST00000316407 NBDYA0A0U1RRE5 68 aa5.68□□□□□ -1.5
USF3-201ENST00000316407 DNAH14Q0VDD8 3507 aa5.68□□□□□ -1.5
USF3-201ENST00000316407 VPS13AQ96RL7 3174 aa5.68□□□□□ -1.5
USF3-201ENST00000316407 RANBP2P49792 3224 aaKnown RBP5.67□□□□□ -1.5
USF3-201ENST00000316407 A0A1W2PNM2 257 aa5.67□□□□□ -1.5
USF3-201ENST00000316407 H3BNG1 76 aa5.67□□□□□ -1.5
USF3-201ENST00000316407 TRANK1O15050 2925 aa5.67□□□□□ -1.5
USF3-201ENST00000316407 LINC00304Q8N9R0 145 aa5.66□□□□□ -1.5
USF3-201ENST00000316407 Q5VV11 94 aa5.65□□□□□ -1.5
USF3-201ENST00000316407 CSNK1G2-AS1Q8NCQ2 148 aa5.65□□□□□ -1.5
USF3-201ENST00000316407 IGLV5-37A0A075B6J1 123 aa5.65□□□□□ -1.51
USF3-201ENST00000316407 MKI67P46013 3256 aaKnown RBP5.64□□□□□ -1.51
USF3-201ENST00000316407 A0A1B0GU33 70 aa5.64□□□□□ -1.51
USF3-201ENST00000316407 SPINK7P58062 85 aa5.63□□□□□ -1.51
USF3-201ENST00000316407 BRCA2P51587 3418 aa5.63□□□□□ -1.51
USF3-201ENST00000316407 PLA2G2DQ9UNK4 145 aa5.62□□□□□ -1.51
USF3-201ENST00000316407 BAHCC1Q9P281 2608 aa5.61□□□□□ -1.51
USF3-201ENST00000316407 ZNF861PO60384 105 aa5.61□□□□□ -1.51
USF3-201ENST00000316407 A0A0A0MQY5 61 aa5.61□□□□□ -1.51
USF3-201ENST00000316407 DSPP15924 2871 aaKnown RBP5.6□□□□□ -1.51
USF3-201ENST00000316407 Q8N9P0 234 aaPredicted RBP5.6□□□□□ -1.51
USF3-201ENST00000316407 APCP25054 2843 aa5.6□□□□□ -1.51
USF3-201ENST00000316407 LINC00483Q53H64 154 aa5.6□□□□□ -1.51
USF3-201ENST00000316407 OXTP01178 125 aa5.6□□□□□ -1.51
USF3-201ENST00000316407 SMR3BP02814 79 aaPredicted RBP5.59□□□□□ -1.51
USF3-201ENST00000316407 CDH23Q9H251 3354 aa5.59□□□□□ -1.51
USF3-201ENST00000316407 CELSR3Q9NYQ7 3312 aa5.59□□□□□ -1.52
USF3-201ENST00000316407 NBEAL2Q6ZNJ1 2754 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms