RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 C2orf48Q96LS8 159 aa6.83□□□□□ -1.32
VPS4B-204ENST00000589604 ERG28Q9UKR5 140 aa6.83□□□□□ -1.32
VPS4B-204ENST00000589604 A0A1B0GWB2 263 aa6.82□□□□□ -1.32
VPS4B-204ENST00000589604 LRCOL1A6NCL2 159 aa6.82□□□□□ -1.32
VPS4B-204ENST00000589604 CIRBPQ14011 172 aaKnown RBP6.82□□□□□ -1.32
VPS4B-204ENST00000589604 C6orf48Q9UBA6 75 aa6.82□□□□□ -1.32
VPS4B-204ENST00000589604 FUSP35637 526 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS4B-204ENST00000589604 LCE2AQ5TA79 106 aaPredicted RBP6.81□□□□□ -1.32
VPS4B-204ENST00000589604 Q6ZRU5 148 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 LINC00336Q6ZUF6 198 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 MIR7-3HGQ8N6C7 128 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 LINC00308Q8TCZ7 52 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 A0A087WTM6 91 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 LECT2O14960 151 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 IFITM1P13164 125 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 PFN2P35080 140 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 LINC00158P58513 81 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 NPC2P61916 151 aa6.81□□□□□ -1.32
VPS4B-204ENST00000589604 TAX1BP3O14907 124 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 CFC1BP0CG36 223 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 CFC1P0CG37 223 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 COX17Q14061 63 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 COL5A1-AS1Q5SY13 56 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 CAMK2N2Q96S95 79 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 PPDPFQ9H3Y8 114 aa6.8□□□□□ -1.32
VPS4B-204ENST00000589604 LOC107984156A0A0G2JMH3 177 aa6.79□□□□□ -1.32
VPS4B-204ENST00000589604 TRBV30A0A0K0K1B3 111 aa6.79□□□□□ -1.32
VPS4B-204ENST00000589604 KRTAP10-2P60368 255 aa6.79□□□□□ -1.32
VPS4B-204ENST00000589604 ARL17AQ8IVW1 177 aa6.79□□□□□ -1.32
VPS4B-204ENST00000589604 NHP2Q9NX24 153 aaKnown RBP6.79□□□□□ -1.32
VPS4B-204ENST00000589604 DNAH5Q8TE73 4624 aa6.79□□□□□ -1.32
VPS4B-204ENST00000589604 A6NDN8 102 aa6.78□□□□□ -1.32
VPS4B-204ENST00000589604 K7ERJ3 54 aa6.78□□□□□ -1.32
VPS4B-204ENST00000589604 PSCAO43653 123 aa6.78□□□□□ -1.32
VPS4B-204ENST00000589604 RPL24P83731 157 aaKnown RBP6.78□□□□□ -1.32
VPS4B-204ENST00000589604 SYCNQ0VAF6 134 aa6.78□□□□□ -1.32
VPS4B-204ENST00000589604 SND1-IT1Q9HBX3 110 aa6.77□□□□□ -1.33
VPS4B-204ENST00000589604 Q8NDZ9 215 aa6.76□□□□□ -1.33
VPS4B-204ENST00000589604 DYNC1H1Q14204 4646 aaKnown RBP6.75□□□□□ -1.33
VPS4B-204ENST00000589604 IGKV2-28A0A075B6P5 120 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 A0A0B4J2C4 111 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 IGKV2D-28P01615 120 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 Q8N814 137 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 RAB37Q96AX2 223 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 CARD19Q96LW7 228 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.74□□□□□ -1.33
VPS4B-204ENST00000589604 NDUFC2-KCTD14E9PQ53 114 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 TLX1NBP0CAT3 122 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 CNBPP62633 177 aaKnown RBP6.74□□□□□ -1.33
VPS4B-204ENST00000589604 UBE2V1Q13404 147 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 Q6ZRP5 223 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 COPS9Q8WXC6 57 aa6.74□□□□□ -1.33
VPS4B-204ENST00000589604 A0A1B0GV90 55 aa6.73□□□□□ -1.33
VPS4B-204ENST00000589604 LRP1BQ9NZR2 4599 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.72□□□□□ -1.33
VPS4B-204ENST00000589604 GAGE2BQ13066 116 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 GAGE2EQ4V326 116 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 C14orf177Q52M58 125 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 GAGE2AQ6NT46 116 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 NAA38Q9BRA0 125 aaKnown RBP6.72□□□□□ -1.33
VPS4B-204ENST00000589604 GAGE2DQ9UEU5 116 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 PRO1854Q9UHT4 67 aa6.72□□□□□ -1.33
VPS4B-204ENST00000589604 PRR3P79522 188 aaKnown RBP6.71□□□□□ -1.33
VPS4B-204ENST00000589604 LINC00337Q8N6G1 96 aa6.71□□□□□ -1.33
VPS4B-204ENST00000589604 XAGE1AQ9HD64 81 aa6.71□□□□□ -1.33
VPS4B-204ENST00000589604 NDUFC2O95298 119 aa6.71□□□□□ -1.34
VPS4B-204ENST00000589604 TSPAN13O95857 204 aa6.71□□□□□ -1.34
VPS4B-204ENST00000589604 LINC01620Q4KN68 170 aa6.71□□□□□ -1.34
VPS4B-204ENST00000589604 C9orf129Q5T035 196 aaKnown RBP6.71□□□□□ -1.34
VPS4B-204ENST00000589604 H3BUT2 72 aa6.7□□□□□ -1.34
VPS4B-204ENST00000589604 KRTAP10-1P60331 282 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 C9orf163Q8N9P6 203 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 HERC2O95714 4834 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 LOC107984640A0A0U1RRK4 108 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 C16orf90A8MZG2 172 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 RPL13AP40429 203 aaKnown RBP6.68□□□□□ -1.34
VPS4B-204ENST00000589604 KRTAP7-1Q8IUC3 87 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 KRTAP17-1Q9BYP8 105 aa6.68□□□□□ -1.34
VPS4B-204ENST00000589604 IGLV5-52A0A0A0MRZ9 124 aa6.67□□□□□ -1.34
VPS4B-204ENST00000589604 A0A1W2PPM0 123 aa6.67□□□□□ -1.34
VPS4B-204ENST00000589604 RPL18AQ02543 176 aaKnown RBP6.67□□□□□ -1.34
VPS4B-204ENST00000589604 APOBP04114 4563 aaKnown RBP6.67□□□□□ -1.34
VPS4B-204ENST00000589604 TRAV13-2A0A0B4J235 113 aa6.66□□□□□ -1.34
VPS4B-204ENST00000589604 H7C2G1 150 aa6.66□□□□□ -1.34
VPS4B-204ENST00000589604 KIAA1109Q2LD37 5005 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 A0A096LNI7 61 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 TRBV10-2A0A0K0K1G8 114 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 NCR3O14931 201 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 SDIM1Q6ZPB5 146 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 DNAH8Q96JB1 4490 aa6.65□□□□□ -1.34
VPS4B-204ENST00000589604 IGLV5-37A0A075B6J1 123 aa6.64□□□□□ -1.35
VPS4B-204ENST00000589604 FAM168BA1KXE4 195 aa6.64□□□□□ -1.35
VPS4B-204ENST00000589604 IGLV6-57P01721 117 aa6.63□□□□□ -1.35
VPS4B-204ENST00000589604 SMIM11BQ8TCY0 68 aa6.63□□□□□ -1.35
VPS4B-204ENST00000589604 PANO1I0J062 215 aa6.62□□□□□ -1.35
VPS4B-204ENST00000589604 FABP2P12104 132 aa6.62□□□□□ -1.35
VPS4B-204ENST00000589604 RPL28P46779 137 aaKnown RBP6.62□□□□□ -1.35
VPS4B-204ENST00000589604 HAMPP81172 84 aa6.62□□□□□ -1.35
VPS4B-204ENST00000589604 OR13C6PQ8NH95 151 aa6.62□□□□□ -1.35
VPS4B-204ENST00000589604 HSPG2P98160 4391 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms