RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PLA2G1BP04054 148 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-217ENST00000512946 CHD7Q9P2D1 2997 aa7.79□□□□□ -1.16
LIMCH1-217ENST00000512946 FAM208BQ5VWN6 2430 aa7.79□□□□□ -1.16
LIMCH1-217ENST00000512946 LINC00315P59091 139 aa7.79□□□□□ -1.16
LIMCH1-217ENST00000512946 ALPK3Q96L96 1907 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 Q6ZSN1 163 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 LINC00167Q96N53 147 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 MRPL34Q9BQ48 92 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 ACACBO00763 2458 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 NAV3Q8IVL0 2385 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 LUZP6Q538Z0 58 aa7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 GVQW2A0A096LPI5 108 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-217ENST00000512946 H3BNG1 76 aa7.76□□□□□ -1.17
LIMCH1-217ENST00000512946 LY6G6DO95868 133 aa7.76□□□□□ -1.17
LIMCH1-217ENST00000512946 CACNA1AO00555 2505 aa7.75□□□□□ -1.17
LIMCH1-217ENST00000512946 TMEM131Q92545 1883 aa7.75□□□□□ -1.17
LIMCH1-217ENST00000512946 EPM2AB3EWF7 344 aa7.75□□□□□ -1.17
LIMCH1-217ENST00000512946 A0A1W2PNU3 283 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-217ENST00000512946 M0R2N4 97 aa7.74□□□□□ -1.17
LIMCH1-217ENST00000512946 C2orf16Q68DN1 1984 aa7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 EDN2P20800 178 aa7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 Q6ZRP5 223 aa7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 ZNF106Q9H2Y7 1883 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 C16orf95Q9H693 158 aa7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 PCNX3Q9H6A9 2034 aa7.73□□□□□ -1.17
LIMCH1-217ENST00000512946 LINC01554Q52M75 96 aa7.72□□□□□ -1.17
LIMCH1-217ENST00000512946 SONP18583 2426 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-217ENST00000512946 COL4A6Q14031 1691 aa7.72□□□□□ -1.17
LIMCH1-217ENST00000512946 EYSQ5T1H1 3165 aa7.71□□□□□ -1.17
LIMCH1-217ENST00000512946 LY6G6CO95867 125 aa7.71□□□□□ -1.17
LIMCH1-217ENST00000512946 Q1T7F1 81 aa7.71□□□□□ -1.17
LIMCH1-217ENST00000512946 C18orf65Q6ZTR6 163 aa7.71□□□□□ -1.17
LIMCH1-217ENST00000512946 IGLV8-61A0A075B6I0 122 aa7.71□□□□□ -1.18
LIMCH1-217ENST00000512946 SPG11Q96JI7 2443 aa7.71□□□□□ -1.18
LIMCH1-217ENST00000512946 DOPEY1Q5JWR5 2465 aa7.71□□□□□ -1.18
LIMCH1-217ENST00000512946 IGLV6-57P01721 117 aa7.71□□□□□ -1.18
LIMCH1-217ENST00000512946 LITAFQ99732 161 aa7.71□□□□□ -1.18
LIMCH1-217ENST00000512946 MUC6Q6W4X9 2439 aa7.7□□□□□ -1.18
LIMCH1-217ENST00000512946 ATG2AQ2TAZ0 1938 aa7.7□□□□□ -1.18
LIMCH1-217ENST00000512946 C19orf84I3L1E1 186 aa7.69□□□□□ -1.18
LIMCH1-217ENST00000512946 WISP2O76076 250 aa7.69□□□□□ -1.18
LIMCH1-217ENST00000512946 C1orf134Q5TEV5 83 aa7.69□□□□□ -1.18
LIMCH1-217ENST00000512946 NUP210LQ5VU65 1888 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 K7EQZ3 153 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 RPL37AP61513 92 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 COL6A3P12111 3177 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 XIRP2A4UGR9 3374 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 TRIOO75962 3097 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 INAFM1C9JVW0 142 aa7.68□□□□□ -1.18
LIMCH1-217ENST00000512946 SPACA4Q8TDM5 124 aa7.67□□□□□ -1.18
LIMCH1-217ENST00000512946 DSCAMO60469 2012 aa7.66□□□□□ -1.18
LIMCH1-217ENST00000512946 USP34Q70CQ2 3546 aa7.65□□□□□ -1.18
LIMCH1-217ENST00000512946 MYO18BQ8IUG5 2567 aa7.65□□□□□ -1.18
LIMCH1-217ENST00000512946 MUC4Q99102 2169 aa7.65□□□□□ -1.18
LIMCH1-217ENST00000512946 AVPP01185 164 aa7.65□□□□□ -1.18
LIMCH1-217ENST00000512946 C8orf17Q9NRJ1 99 aa7.64□□□□□ -1.19
LIMCH1-217ENST00000512946 CHD9Q3L8U1 2897 aa7.64□□□□□ -1.19
LIMCH1-217ENST00000512946 C16orf90A8MZG2 172 aa7.64□□□□□ -1.19
LIMCH1-217ENST00000512946 A0A0A0MQY5 61 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 PRO3102Q9H379 93 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 RBM12B-AS1Q9P1G2 102 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 FHL3Q13643 280 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 ST20-AS1Q8NBB2 130 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 KCNQ1DNQ9H478 68 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 NOTCH4Q99466 2003 aa7.63□□□□□ -1.19
LIMCH1-217ENST00000512946 LINC00528Q8N1L1 170 aa7.62□□□□□ -1.19
LIMCH1-217ENST00000512946 ZNF462Q96JM2 2506 aa7.62□□□□□ -1.19
LIMCH1-217ENST00000512946 PTPN13Q12923 2485 aa7.61□□□□□ -1.19
LIMCH1-217ENST00000512946 APLNQ9ULZ1 77 aa7.61□□□□□ -1.19
LIMCH1-217ENST00000512946 ABCA2Q9BZC7 2435 aa7.61□□□□□ -1.19
LIMCH1-217ENST00000512946 REV3LO60673 3130 aa7.61□□□□□ -1.19
LIMCH1-217ENST00000512946 H3BS24 57 aa7.6□□□□□ -1.19
LIMCH1-217ENST00000512946 PIEZO1Q92508 2521 aa7.6□□□□□ -1.19
LIMCH1-217ENST00000512946 A0A1B0GVX0 72 aa7.59□□□□□ -1.19
LIMCH1-217ENST00000512946 Q75L30 129 aa7.58□□□□□ -1.2
LIMCH1-217ENST00000512946 C9orf129Q5T035 196 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-217ENST00000512946 FAM104AQ969W3 186 aa7.58□□□□□ -1.2
LIMCH1-217ENST00000512946 NOTCH2Q04721 2471 aa7.57□□□□□ -1.2
LIMCH1-217ENST00000512946 Q96NJ1 140 aa7.57□□□□□ -1.2
LIMCH1-217ENST00000512946 TYMSOSQ8TAI1 123 aa7.56□□□□□ -1.2
LIMCH1-217ENST00000512946 DMAC1Q96GE9 116 aa7.56□□□□□ -1.2
LIMCH1-217ENST00000512946 DNAH14Q0VDD8 3507 aa7.56□□□□□ -1.2
LIMCH1-217ENST00000512946 KLK9Q2XQG4 91 aa7.55□□□□□ -1.2
LIMCH1-217ENST00000512946 EXPH5Q8NEV8 1989 aa7.54□□□□□ -1.2
LIMCH1-217ENST00000512946 IGLV1-50A0A075B6I6 118 aa7.54□□□□□ -1.2
LIMCH1-217ENST00000512946 KIF26AQ9ULI4 1882 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-217ENST00000512946 IGFL1Q6UW32 110 aa7.54□□□□□ -1.2
LIMCH1-217ENST00000512946 NAV2Q8IVL1 2488 aa7.52□□□□□ -1.21
LIMCH1-217ENST00000512946 PLA2G2DQ9UNK4 145 aa7.52□□□□□ -1.21
LIMCH1-217ENST00000512946 NCOR2Q9Y618 2525 aa7.52□□□□□ -1.21
LIMCH1-217ENST00000512946 SPTBN4Q9H254 2564 aa7.51□□□□□ -1.21
LIMCH1-217ENST00000512946 VPS13AQ96RL7 3174 aa7.51□□□□□ -1.21
LIMCH1-217ENST00000512946 C15orf56Q8N910 161 aa7.51□□□□□ -1.21
LIMCH1-217ENST00000512946 PHF5AQ7RTV0 110 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-217ENST00000512946 COL5A1P20908 1838 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-217ENST00000512946 SPEGQ15772 3267 aa7.5□□□□□ -1.21
LIMCH1-217ENST00000512946 OBSCN-AS1Q96MR7 158 aa7.49□□□□□ -1.21
LIMCH1-217ENST00000512946 KIAA1549LQ6ZVL6 1849 aa7.49□□□□□ -1.21
LIMCH1-217ENST00000512946 ADAMTS20P59510 1910 aa7.49□□□□□ -1.21
LIMCH1-217ENST00000512946 MYO9AB2RTY4 2548 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms