RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 POLA1P09884 1462 aaPredicted RBP1.34□□□□□ -2.19
SMC5-203ENST00000475540 MUC2Q02817 5179 aa1.34□□□□□ -2.2
SMC5-203ENST00000475540 URB2Q14146 1524 aaKnown RBP1.34□□□□□ -2.2
SMC5-203ENST00000475540 BIRC6Q9NR09 4857 aa1.34□□□□□ -2.2
SMC5-203ENST00000475540 NF1P21359 2839 aa1.34□□□□□ -2.2
SMC5-203ENST00000475540 PDZD2O15018 2839 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 RGPD1P0DJD0 1748 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 TRBV6-1A0A0K0K1D8 114 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 H3BQF6 201 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 ARMS2P0C7Q2 107 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 SSBP3-AS1Q7Z2R9 100 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 CADP27708 2225 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 VPS13AQ96RL7 3174 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 ZFHX3Q15911 3703 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 HYDINQ4G0P3 5121 aa1.33□□□□□ -2.2
SMC5-203ENST00000475540 CROCC2H7BZ55 1655 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 C1orf167Q5SNV9 1468 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 ARHGAP35Q9NRY4 1499 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 F8WEM9 126 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 GVINP1Q7Z2Y8 2422 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 DNAH14Q0VDD8 3507 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 ZZEF1O43149 2961 aa1.32□□□□□ -2.2
SMC5-203ENST00000475540 PTPRZ1P23471 2315 aaPredicted RBP1.31□□□□□ -2.2
SMC5-203ENST00000475540 USP32Q8NFA0 1604 aa1.31□□□□□ -2.2
SMC5-203ENST00000475540 SUPT6HQ7KZ85 1726 aaKnown RBP1.31□□□□□ -2.2
SMC5-203ENST00000475540 SMG1Q96Q15 3661 aaKnown RBP1.31□□□□□ -2.2
SMC5-203ENST00000475540 PLXNB2O15031 1838 aa1.31□□□□□ -2.2
SMC5-203ENST00000475540 MAGI2Q86UL8 1455 aa1.31□□□□□ -2.2
SMC5-203ENST00000475540 TULP4Q9NRJ4 1543 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 SPTA1P02549 2419 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 NBEAQ8NFP9 2946 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 KIF14Q15058 1648 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 CEP295Q9C0D2 2601 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 A0A0D9SFI3 127 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 SPINK7P58062 85 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 ALKAL2Q6UX46 152 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 FDCSPQ8NFU4 85 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 LINC01600Q96MT4 127 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 CSMD1Q96PZ7 3565 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 UTP20O75691 2785 aaKnown RBP1.3□□□□□ -2.2
SMC5-203ENST00000475540 ABCA8O94911 1581 aa1.3□□□□□ -2.2
SMC5-203ENST00000475540 WDR87Q6ZQQ6 2873 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 PREX2Q70Z35 1606 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 DMXL1Q9Y485 3027 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 POLR1AO95602 1720 aaPredicted RBP1.29□□□□□ -2.2
SMC5-203ENST00000475540 HMGN2P05204 90 aaKnown RBP1.29□□□□□ -2.2
SMC5-203ENST00000475540 COX6A2Q02221 97 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 PRB3Q04118 309 aaPredicted RBP1.29□□□□□ -2.2
SMC5-203ENST00000475540 CRYBG3Q68DQ2 2970 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 PSENENQ9NZ42 101 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 CACNA1CQ13936 2221 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 C3P01024 1663 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 CELSR1Q9NYQ6 3014 aa1.29□□□□□ -2.2
SMC5-203ENST00000475540 LOC400499M0QZD8 3231 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 CREBBPQ92793 2442 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 CELSR2Q9HCU4 2923 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 LEPROTL1O95214 131 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 SNRPFP62306 86 aaKnown RBP1.28□□□□□ -2.2
SMC5-203ENST00000475540 MAP3K1Q13233 1512 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 TARBP1Q13395 1621 aaKnown RBP1.28□□□□□ -2.2
SMC5-203ENST00000475540 UBR1Q8IWV7 1749 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 XRN1Q8IZH2 1706 aaKnown RBP1.28□□□□□ -2.2
SMC5-203ENST00000475540 ASXL3Q9C0F0 2248 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 ITPR1Q14643 2758 aa1.28□□□□□ -2.2
SMC5-203ENST00000475540 EPPK1P58107 5090 aaKnown RBP1.28□□□□□ -2.21
SMC5-203ENST00000475540 ZANQ9Y493 2812 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 KNDC1Q76NI1 1749 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 CEP170BQ9Y4F5 1589 aaPredicted RBP1.27□□□□□ -2.21
SMC5-203ENST00000475540 KCPQ6ZWJ8 1503 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 D6R8Y8 96 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 H0Y9P7 68 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 TDRG1Q3Y452 100 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 MUSTN1Q8IVN3 82 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 S100A13Q99584 98 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 CNFNQ9BYD5 112 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 SPCS1Q9Y6A9 102 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 MTORP42345 2549 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 MYH4Q9Y623 1939 aa1.27□□□□□ -2.21
SMC5-203ENST00000475540 KDM5DQ9BY66 1539 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 COL12A1Q99715 3063 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 SPATA8Q6RVD6 105 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 DEFB107AQ8IZN7 70 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 DEFB123Q8N688 67 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 PRO3102Q9H379 93 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 NRXN3Q9Y4C0 1643 aa1.26□□□□□ -2.21
SMC5-203ENST00000475540 MAGI3Q5TCQ9 1506 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 FANCD2Q9BXW9 1451 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 FRYLO94915 3013 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 GNGT1P63211 74 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 FREM2Q5SZK8 3169 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 KMT2CQ8NEZ4 4911 aaKnown RBP1.25□□□□□ -2.21
SMC5-203ENST00000475540 USP9YO00507 2555 aaPredicted RBP1.25□□□□□ -2.21
SMC5-203ENST00000475540 EP300Q09472 2414 aaPredicted RBP1.25□□□□□ -2.21
SMC5-203ENST00000475540 FAM186AA6NE01 2351 aa1.25□□□□□ -2.21
SMC5-203ENST00000475540 RIF1Q5UIP0 2472 aaKnown RBP1.24□□□□□ -2.21
SMC5-203ENST00000475540 TNRC6CQ9HCJ0 1690 aaKnown RBP1.24□□□□□ -2.21
SMC5-203ENST00000475540 LRRC9Q6ZRR7 1453 aa1.24□□□□□ -2.21
SMC5-203ENST00000475540 A0A0G2JMZ2 1700 aa1.23□□□□□ -2.21
SMC5-203ENST00000475540 C5P01031 1676 aa1.23□□□□□ -2.21
SMC5-203ENST00000475540 LAMC1P11047 1609 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms