RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 AEBP2Q6ZN18 517 aaPredicted RBP35.78■■■■□ 3.32
SMC5-203ENST00000475540 CHIC1Q5VXU3 224 aa34.95■■■■□ 3.19
SMC5-203ENST00000475540 PHF23Q9BUL5 403 aaPredicted RBP30.7■■■□□ 2.51
SMC5-203ENST00000475540 SENP3Q9H4L4 574 aaPredicted RBP30.45■■■□□ 2.47
SMC5-203ENST00000475540 PLPPR3Q6T4P5 718 aa28.4■■■□□ 2.14
SMC5-203ENST00000475540 FOXD1Q16676 465 aa28.23■■■□□ 2.11
SMC5-203ENST00000475540 ADRA2BP18089 450 aa27.11■■□□□ 1.93
SMC5-203ENST00000475540 PPP6R1Q9UPN7 881 aa27.11■■□□□ 1.93
SMC5-203ENST00000475540 PIAS4Q8N2W9 510 aaPredicted RBP26.64■■□□□ 1.86
SMC5-203ENST00000475540 MSH5O43196 834 aa26.1■■□□□ 1.77
SMC5-203ENST00000475540 POTEDQ86YR6 584 aa25.73■■□□□ 1.71
SMC5-203ENST00000475540 PPP4R3CPQ6ZMV5 832 aa25.01■■□□□ 1.59
SMC5-203ENST00000475540 SCAF1Q9H7N4 1312 aaKnown RBP24.9■■□□□ 1.58
SMC5-203ENST00000475540 MAPK8IP2Q13387 824 aaPredicted RBP24.61■■□□□ 1.53
SMC5-203ENST00000475540 NCBP3Q53F19 620 aaKnown RBP24.4■■□□□ 1.5
SMC5-203ENST00000475540 KCNA4P22459 653 aa24.33■■□□□ 1.49
SMC5-203ENST00000475540 CNKSR2Q8WXI2 1034 aa24.33■■□□□ 1.49
SMC5-203ENST00000475540 DMRT2Q9Y5R5 561 aa24.27■■□□□ 1.48
SMC5-203ENST00000475540 NPM3O75607 178 aaKnown RBP23.95■■□□□ 1.42
SMC5-203ENST00000475540 RNF216Q9NWF9 866 aaPredicted RBP23.86■■□□□ 1.41
SMC5-203ENST00000475540 HOXD11P31277 338 aaPredicted RBP23.75■■□□□ 1.39
SMC5-203ENST00000475540 DCAF8L1A6NGE4 600 aa23.3■■□□□ 1.32
SMC5-203ENST00000475540 DNAJC5BQ9UF47 199 aa23.25■■□□□ 1.31
SMC5-203ENST00000475540 SLC4A1APQ9BWU0 796 aaKnown RBP23.2■■□□□ 1.3
SMC5-203ENST00000475540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.7■■□□□ 1.22
SMC5-203ENST00000475540 SLC4A2P04920 1241 aa22.61■■□□□ 1.21
SMC5-203ENST00000475540 EHMT2Q96KQ7 1210 aa22.47■■□□□ 1.19
SMC5-203ENST00000475540 FOXD4L1Q9NU39 408 aa22.44■■□□□ 1.18
SMC5-203ENST00000475540 ZBTB22O15209 634 aa22.34■■□□□ 1.17
SMC5-203ENST00000475540 RNF39Q9H2S5 420 aa22.32■■□□□ 1.16
SMC5-203ENST00000475540 U3KPZ7 1027 aaPredicted RBP22.25■■□□□ 1.15
SMC5-203ENST00000475540 CACNB1Q02641 598 aaPredicted RBP22.24■■□□□ 1.15
SMC5-203ENST00000475540 CSRNP3Q8WYN3 585 aa22.23■■□□□ 1.15
SMC5-203ENST00000475540 MYCNP04198 464 aaPredicted RBP22.17■■□□□ 1.14
SMC5-203ENST00000475540 C1QBPQ07021 282 aaKnown RBP22.09■■□□□ 1.13
SMC5-203ENST00000475540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.05■■□□□ 1.12
SMC5-203ENST00000475540 HNRNPUL2Q1KMD3 747 aaKnown RBP22.05■■□□□ 1.12
SMC5-203ENST00000475540 SAMD1Q6SPF0 538 aaPredicted RBP21.94■■□□□ 1.1
SMC5-203ENST00000475540 APLP2Q06481 763 aa21.85■■□□□ 1.09
SMC5-203ENST00000475540 ATXN8OSP0DMR3 200 aa21.68■■□□□ 1.06
SMC5-203ENST00000475540 SPINK5Q9NQ38 1064 aaPredicted RBP21.65■■□□□ 1.06
SMC5-203ENST00000475540 CAPN15O75808 1086 aa21.63■■□□□ 1.05
SMC5-203ENST00000475540 TRHP20396 242 aaPredicted RBP21.52■■□□□ 1.04
SMC5-203ENST00000475540 ATF5Q9Y2D1 282 aaPredicted RBP21.52■■□□□ 1.04
SMC5-203ENST00000475540 ZNF219Q9P2Y4 722 aaPredicted RBP21.51■■□□□ 1.03
SMC5-203ENST00000475540 DSG3P32926 999 aa21.23■□□□□ 0.99
SMC5-203ENST00000475540 ABCB7O75027 752 aa21.17■□□□□ 0.98
SMC5-203ENST00000475540 POLA2Q14181 598 aa21.14■□□□□ 0.97
SMC5-203ENST00000475540 ZBTB12Q9Y330 459 aaPredicted RBP20.81■□□□□ 0.92
SMC5-203ENST00000475540 FBLN2P98095 1184 aa20.72■□□□□ 0.91
SMC5-203ENST00000475540 MKRN4PQ13434 485 aaPredicted RBP20.58■□□□□ 0.89
SMC5-203ENST00000475540 OSCARQ8IYS5 282 aa20.38■□□□□ 0.85
SMC5-203ENST00000475540 RBM42Q9BTD8 480 aaKnown RBP20.29■□□□□ 0.84
SMC5-203ENST00000475540 SPDYE2BA6NHP3 402 aa20.22■□□□□ 0.83
SMC5-203ENST00000475540 SPDYE6P0CI01 402 aa20.22■□□□□ 0.83
SMC5-203ENST00000475540 SPDYE2Q495Y8 402 aa20.22■□□□□ 0.83
SMC5-203ENST00000475540 ZNF692Q9BU19 519 aaPredicted RBP20.17■□□□□ 0.82
SMC5-203ENST00000475540 SPDYE4A6NLX3 237 aa20.16■□□□□ 0.82
SMC5-203ENST00000475540 FKBP8Q14318 412 aa20.13■□□□□ 0.81
SMC5-203ENST00000475540 POTEHQ6S545 545 aa20.08■□□□□ 0.81
SMC5-203ENST00000475540 SSUH2Q9Y2M2 353 aa20.02■□□□□ 0.8
SMC5-203ENST00000475540 AKT1S1Q96B36 256 aa20.01■□□□□ 0.79
SMC5-203ENST00000475540 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
SMC5-203ENST00000475540 REM2Q8IYK8 340 aaPredicted RBP19.8■□□□□ 0.76
SMC5-203ENST00000475540 PROM2Q8N271 834 aa19.75■□□□□ 0.75
SMC5-203ENST00000475540 SPDYE1Q8NFV5 336 aaPredicted RBP19.66■□□□□ 0.74
SMC5-203ENST00000475540 CLEC11AQ9Y240 323 aa19.59■□□□□ 0.73
SMC5-203ENST00000475540 STAG3Q9UJ98 1225 aa19.58■□□□□ 0.72
SMC5-203ENST00000475540 PITPNM1O00562 1244 aa19.55■□□□□ 0.72
SMC5-203ENST00000475540 FBXO3Q9UK99 471 aa19.49■□□□□ 0.71
SMC5-203ENST00000475540 CHRDL2Q6WN34 429 aa19.43■□□□□ 0.7
SMC5-203ENST00000475540 PRR29P0C7W0 189 aa19.41■□□□□ 0.7
SMC5-203ENST00000475540 FXR2P51116 673 aaKnown RBP eCLIP19.21■□□□□ 0.67
SMC5-203ENST00000475540 MIER1Q8N108 512 aa19.17■□□□□ 0.66
SMC5-203ENST00000475540 PIP4P2Q8N4L2 257 aa19.16■□□□□ 0.66
SMC5-203ENST00000475540 VASPP50552 380 aaPredicted RBP19.15■□□□□ 0.66
SMC5-203ENST00000475540 PLCD3Q8N3E9 789 aa19.14■□□□□ 0.65
SMC5-203ENST00000475540 PLEKHG5O94827 1062 aa19.12■□□□□ 0.65
SMC5-203ENST00000475540 PRKAR2AP13861 404 aaKnown RBP19.09■□□□□ 0.65
SMC5-203ENST00000475540 CREBZFQ9NS37 354 aa19.08■□□□□ 0.64
SMC5-203ENST00000475540 CHADLQ6NUI6 762 aa19.06■□□□□ 0.64
SMC5-203ENST00000475540 ZBTB47Q9UFB7 747 aaPredicted RBP18.94■□□□□ 0.62
SMC5-203ENST00000475540 KLHL34Q8N239 644 aa18.92■□□□□ 0.62
SMC5-203ENST00000475540 FARP1Q9Y4F1 1045 aaPredicted RBP18.9■□□□□ 0.62
SMC5-203ENST00000475540 IFNLR1Q8IU57 520 aaPredicted RBP18.88■□□□□ 0.61
SMC5-203ENST00000475540 NPM1P06748 294 aaKnown RBP eCLIP18.85■□□□□ 0.61
SMC5-203ENST00000475540 MNX1P50219 401 aaPredicted RBP18.85■□□□□ 0.61
SMC5-203ENST00000475540 SPOCK2Q92563 424 aa18.71■□□□□ 0.59
SMC5-203ENST00000475540 HAX1O00165 279 aa18.62■□□□□ 0.57
SMC5-203ENST00000475540 NUBP1P53384 320 aa18.61■□□□□ 0.57
SMC5-203ENST00000475540 SP7Q8TDD2 431 aaPredicted RBP18.6■□□□□ 0.57
SMC5-203ENST00000475540 C19orf67A6NJJ6 358 aa18.55■□□□□ 0.56
SMC5-203ENST00000475540 PAK3O75914 559 aaPredicted RBP18.55■□□□□ 0.56
SMC5-203ENST00000475540 CD44P16070 742 aaKnown RBP18.54■□□□□ 0.56
SMC5-203ENST00000475540 RASEFQ8IZ41 740 aa18.54■□□□□ 0.56
SMC5-203ENST00000475540 DCAF8Q5TAQ9 597 aa18.51■□□□□ 0.55
SMC5-203ENST00000475540 FAM212AQ96EL1 285 aa18.51■□□□□ 0.55
SMC5-203ENST00000475540 TSPYL2Q9H2G4 693 aaPredicted RBP18.5■□□□□ 0.55
SMC5-203ENST00000475540 GSE1Q14687 1217 aa18.46■□□□□ 0.55
SMC5-203ENST00000475540 ZRANB1Q9UGI0 708 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms