RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 CACNA1AO00555 2505 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 PIEZO2Q9H5I5 2752 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 KIAA0556O60303 1618 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 IQCF6A8MYZ5 107 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 LOC730098B7Z3J9 87 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 HMGN2P05204 90 aaKnown RBP-0.04□□□□□ -2.42
HERC3-208ENST00000470815 SPRR2DP22532 72 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 TDRG1Q3Y452 100 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 UBE2D4Q9Y2X8 147 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 V9GYS6 101 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 NEXMIFQ5QGS0 1516 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 TNXBP22105 4242 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 NKTRP30414 1462 aaKnown RBP-0.04□□□□□ -2.42
HERC3-208ENST00000470815 A0A0G2JMZ2 1700 aa-0.04□□□□□ -2.42
HERC3-208ENST00000470815 TARBP1Q13395 1621 aaKnown RBP-0.05□□□□□ -2.42
HERC3-208ENST00000470815 SPTY2D1-AS1A0A0U1RR47 76 aa-0.05□□□□□ -2.42
HERC3-208ENST00000470815 K7EP34 96 aa-0.05□□□□□ -2.42
HERC3-208ENST00000470815 PEA15Q15121 130 aa-0.05□□□□□ -2.42
HERC3-208ENST00000470815 NMSQ5H8A3 153 aa-0.05□□□□□ -2.42
HERC3-208ENST00000470815 S100A16Q96FQ6 103 aaKnown RBP-0.05□□□□□ -2.42
HERC3-208ENST00000470815 MRPL34Q9BQ48 92 aaKnown RBP-0.05□□□□□ -2.42
HERC3-208ENST00000470815 SAMD9Q5K651 1589 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 ABCC2Q92887 1545 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 ANKRD26Q9UPS8 1709 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 ANKRD36A6QL64 1941 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 CYB5AP00167 134 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 SMIM11AP58511 58 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 HEPN1Q6WQI6 88 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 C9orf62Q8N4C0 152 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 ATP10BO94823 1461 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 IQSEC2Q5JU85 1478 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 AKAP12Q02952 1782 aa-0.06□□□□□ -2.42
HERC3-208ENST00000470815 HERC2O95714 4834 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 MON2Q7Z3U7 1717 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 CUX1P39880 1505 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 ATRQ13535 2644 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 BSNQ9UPA5 3926 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 SHPRHQ149N8 1683 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 TRAV21A0A0B4J279 112 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 MYMXA0A1B0GTQ4 84 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 A0A1B0GUT8 65 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 M0R2T5 61 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 COX7BP24311 80 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 GNG2P59768 71 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 PLGLAQ15195 96 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.07□□□□□ -2.42
HERC3-208ENST00000470815 PTPN13Q12923 2485 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 MYH4Q9Y623 1939 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 PLIN4Q96Q06 1357 aa-0.07□□□□□ -2.42
HERC3-208ENST00000470815 EPRSP07814 1512 aaKnown RBP-0.08□□□□□ -2.42
HERC3-208ENST00000470815 CLTCQ00610 1675 aaKnown RBP-0.08□□□□□ -2.42
HERC3-208ENST00000470815 FANCAO15360 1455 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 PVALEFA0A1B0GWK0 134 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 SNRPFP62306 86 aaKnown RBP-0.08□□□□□ -2.42
HERC3-208ENST00000470815 WFDC13Q8IUB5 93 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 GAFA1Q96PS6 74 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 TROQ12816 1431 aaPredicted RBP-0.08□□□□□ -2.42
HERC3-208ENST00000470815 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.08□□□□□ -2.42
HERC3-208ENST00000470815 C5P01031 1676 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 HSPG2P98160 4391 aa-0.08□□□□□ -2.42
HERC3-208ENST00000470815 CCDC141Q6ZP82 1450 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 MAGI2Q86UL8 1455 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 MAP1BP46821 2468 aaKnown RBP-0.09□□□□□ -2.42
HERC3-208ENST00000470815 FAT2Q9NYQ8 4349 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 CHD8Q9HCK8 2581 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 CEP162Q5TB80 1403 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 NDUFA3O95167 84 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 LINC00643Q86TS7 51 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 CDKN2A-AS1Q9UH64 79 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 WNK1Q9H4A3 2382 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 DCHS2Q6V1P9 2916 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 SPTBN4Q9H254 2564 aa-0.09□□□□□ -2.42
HERC3-208ENST00000470815 KMT2AQ03164 3969 aa-0.1□□□□□ -2.42
HERC3-208ENST00000470815 CLIP1P30622 1438 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 SPTA1P02549 2419 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 CEBPZOSA8MTT3 80 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 CCL22O00626 93 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 WFDC9Q8NEX5 89 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 RGPD2P0DJD1 1756 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 FLNCQ14315 2725 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 LRRC37AA6NMS7 1700 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 UBR1Q8IWV7 1749 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 CRYBG1Q9Y4K1 1723 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 ATP7BP35670 1465 aa-0.1□□□□□ -2.43
HERC3-208ENST00000470815 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.1□□□□□ -2.43
HERC3-208ENST00000470815 TTC37Q6PGP7 1564 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 LRRC7Q96NW7 1537 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 STAB1Q9NY15 2570 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 NSD1Q96L73 2696 aaPredicted RBP-0.11□□□□□ -2.43
HERC3-208ENST00000470815 HERC1Q15751 4861 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 SPRR2BP35325 72 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 DEFB135Q30KP9 77 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 KRTAP6-1Q3LI64 71 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 RABAC1Q9UI14 185 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 EP300Q09472 2414 aaPredicted RBP-0.11□□□□□ -2.43
HERC3-208ENST00000470815 RGPD1P0DJD0 1748 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 SMARCA2P51531 1590 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 REV3LO60673 3130 aa-0.11□□□□□ -2.43
HERC3-208ENST00000470815 LPAP08519 4548 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 UBR3Q6ZT12 1888 aa-0.12□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms