RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 AEBP2Q6ZN18 517 aaPredicted RBP23.1■■□□□ 1.29
HERC3-208ENST00000470815 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
HERC3-208ENST00000470815 SENP3Q9H4L4 574 aaPredicted RBP19.78■□□□□ 0.76
HERC3-208ENST00000470815 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
HERC3-208ENST00000470815 FOXD1Q16676 465 aa18.39■□□□□ 0.53
HERC3-208ENST00000470815 PLPPR3Q6T4P5 718 aa17.53■□□□□ 0.4
HERC3-208ENST00000470815 MSH5O43196 834 aa17.29■□□□□ 0.36
HERC3-208ENST00000470815 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
HERC3-208ENST00000470815 PPP6R1Q9UPN7 881 aa17.13■□□□□ 0.33
HERC3-208ENST00000470815 ADRA2BP18089 450 aa17.07■□□□□ 0.32
HERC3-208ENST00000470815 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
HERC3-208ENST00000470815 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
HERC3-208ENST00000470815 MAPK8IP2Q13387 824 aaPredicted RBP15.67■□□□□ 0.1
HERC3-208ENST00000470815 DMRT2Q9Y5R5 561 aa15.67■□□□□ 0.1
HERC3-208ENST00000470815 PPP4R3CPQ6ZMV5 832 aa15.32■□□□□ 0.04
HERC3-208ENST00000470815 HOXD11P31277 338 aaPredicted RBP15.09■□□□□ 0.01
HERC3-208ENST00000470815 CNKSR2Q8WXI2 1034 aa15.09■□□□□ 0.01
HERC3-208ENST00000470815 RNF216Q9NWF9 866 aaPredicted RBP14.97□□□□□ -0.01
HERC3-208ENST00000470815 DCAF8L1A6NGE4 600 aa14.94□□□□□ -0.02
HERC3-208ENST00000470815 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
HERC3-208ENST00000470815 NCBP3Q53F19 620 aaKnown RBP14.77□□□□□ -0.05
HERC3-208ENST00000470815 RNF39Q9H2S5 420 aa14.73□□□□□ -0.05
HERC3-208ENST00000470815 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
HERC3-208ENST00000470815 C1QBPQ07021 282 aaKnown RBP14.53□□□□□ -0.08
HERC3-208ENST00000470815 NPM3O75607 178 aaKnown RBP14.51□□□□□ -0.09
HERC3-208ENST00000470815 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.32□□□□□ -0.12
HERC3-208ENST00000470815 KCNA4P22459 653 aa14.17□□□□□ -0.14
HERC3-208ENST00000470815 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
HERC3-208ENST00000470815 SLC4A2P04920 1241 aa13.86□□□□□ -0.19
HERC3-208ENST00000470815 SPINK5Q9NQ38 1064 aaPredicted RBP13.81□□□□□ -0.2
HERC3-208ENST00000470815 CAPN15O75808 1086 aa13.8□□□□□ -0.2
HERC3-208ENST00000470815 DSG3P32926 999 aa13.76□□□□□ -0.21
HERC3-208ENST00000470815 APLP2Q06481 763 aa13.72□□□□□ -0.21
HERC3-208ENST00000470815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.69□□□□□ -0.22
HERC3-208ENST00000470815 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
HERC3-208ENST00000470815 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
HERC3-208ENST00000470815 SAMD1Q6SPF0 538 aaPredicted RBP13.59□□□□□ -0.23
HERC3-208ENST00000470815 TRHP20396 242 aaPredicted RBP13.55□□□□□ -0.24
HERC3-208ENST00000470815 MYCNP04198 464 aaPredicted RBP13.46□□□□□ -0.25
HERC3-208ENST00000470815 ABCB7O75027 752 aa13.45□□□□□ -0.26
HERC3-208ENST00000470815 SLC4A1APQ9BWU0 796 aaKnown RBP13.39□□□□□ -0.27
HERC3-208ENST00000470815 FOXD4L1Q9NU39 408 aa13.28□□□□□ -0.28
HERC3-208ENST00000470815 POTEHQ6S545 545 aa13.23□□□□□ -0.29
HERC3-208ENST00000470815 POLA2Q14181 598 aa13.19□□□□□ -0.3
HERC3-208ENST00000470815 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
HERC3-208ENST00000470815 ATF5Q9Y2D1 282 aaPredicted RBP13.08□□□□□ -0.32
HERC3-208ENST00000470815 ZBTB22O15209 634 aa13.02□□□□□ -0.33
HERC3-208ENST00000470815 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
HERC3-208ENST00000470815 ATXN8OSP0DMR3 200 aa12.93□□□□□ -0.34
HERC3-208ENST00000470815 CHRDL2Q6WN34 429 aa12.86□□□□□ -0.35
HERC3-208ENST00000470815 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
HERC3-208ENST00000470815 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
HERC3-208ENST00000470815 REM2Q8IYK8 340 aaPredicted RBP12.69□□□□□ -0.38
HERC3-208ENST00000470815 FBLN2P98095 1184 aa12.64□□□□□ -0.39
HERC3-208ENST00000470815 SPDYE2BA6NHP3 402 aa12.59□□□□□ -0.39
HERC3-208ENST00000470815 SPDYE6P0CI01 402 aa12.59□□□□□ -0.39
HERC3-208ENST00000470815 SPDYE2Q495Y8 402 aa12.59□□□□□ -0.39
HERC3-208ENST00000470815 PITPNM1O00562 1244 aa12.56□□□□□ -0.4
HERC3-208ENST00000470815 PIP4P2Q8N4L2 257 aa12.54□□□□□ -0.4
HERC3-208ENST00000470815 MKRN4PQ13434 485 aaPredicted RBP12.5□□□□□ -0.41
HERC3-208ENST00000470815 FXR2P51116 673 aaKnown RBP eCLIP12.48□□□□□ -0.41
HERC3-208ENST00000470815 SSUH2Q9Y2M2 353 aa12.41□□□□□ -0.42
HERC3-208ENST00000470815 SP7Q8TDD2 431 aaPredicted RBP12.39□□□□□ -0.43
HERC3-208ENST00000470815 CSRNP3Q8WYN3 585 aa12.39□□□□□ -0.43
HERC3-208ENST00000470815 ZNF692Q9BU19 519 aaPredicted RBP12.38□□□□□ -0.43
HERC3-208ENST00000470815 SPDYE1Q8NFV5 336 aaPredicted RBP12.36□□□□□ -0.43
HERC3-208ENST00000470815 HAX1O00165 279 aa12.3□□□□□ -0.44
HERC3-208ENST00000470815 CLEC11AQ9Y240 323 aa12.28□□□□□ -0.44
HERC3-208ENST00000470815 PRKAR2AP13861 404 aaKnown RBP12.22□□□□□ -0.45
HERC3-208ENST00000470815 PABPN1Q86U42 306 aaKnown RBP eCLIP12.19□□□□□ -0.46
HERC3-208ENST00000470815 EHMT2Q96KQ7 1210 aa12.17□□□□□ -0.46
HERC3-208ENST00000470815 EVX2Q03828 476 aa12.11□□□□□ -0.47
HERC3-208ENST00000470815 PRR29P0C7W0 189 aa12.1□□□□□ -0.47
HERC3-208ENST00000470815 C19orf67A6NJJ6 358 aa12.08□□□□□ -0.48
HERC3-208ENST00000470815 CHADLQ6NUI6 762 aa12.04□□□□□ -0.48
HERC3-208ENST00000470815 STAG3Q9UJ98 1225 aa11.91□□□□□ -0.5
HERC3-208ENST00000470815 FARP1Q9Y4F1 1045 aaPredicted RBP11.91□□□□□ -0.5
HERC3-208ENST00000470815 SPDYE4A6NLX3 237 aa11.9□□□□□ -0.5
HERC3-208ENST00000470815 GABBR2O75899 941 aa11.88□□□□□ -0.51
HERC3-208ENST00000470815 CD44P16070 742 aaKnown RBP11.84□□□□□ -0.51
HERC3-208ENST00000470815 CREBZFQ9NS37 354 aa11.8□□□□□ -0.52
HERC3-208ENST00000470815 CLCN6P51797 869 aa11.79□□□□□ -0.52
HERC3-208ENST00000470815 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
HERC3-208ENST00000470815 PROM2Q8N271 834 aa11.67□□□□□ -0.54
HERC3-208ENST00000470815 ZRANB1Q9UGI0 708 aa11.65□□□□□ -0.54
HERC3-208ENST00000470815 POTEIP0CG38 1075 aa11.62□□□□□ -0.55
HERC3-208ENST00000470815 NPM1P06748 294 aaKnown RBP eCLIP11.61□□□□□ -0.55
HERC3-208ENST00000470815 LHX8Q68G74 356 aa11.61□□□□□ -0.55
HERC3-208ENST00000470815 MNX1P50219 401 aaPredicted RBP11.6□□□□□ -0.55
HERC3-208ENST00000470815 PAK3O75914 559 aaPredicted RBP11.59□□□□□ -0.55
HERC3-208ENST00000470815 DCBLD2Q96PD2 775 aa11.55□□□□□ -0.56
HERC3-208ENST00000470815 GALR2O43603 387 aaPredicted RBP11.5□□□□□ -0.57
HERC3-208ENST00000470815 PHF12Q96QT6 1004 aa11.47□□□□□ -0.57
HERC3-208ENST00000470815 PLEKHG5O94827 1062 aa11.38□□□□□ -0.59
HERC3-208ENST00000470815 MS4A3Q96HJ5 214 aa11.34□□□□□ -0.59
HERC3-208ENST00000470815 CCDC61Q9Y6R9 512 aa11.34□□□□□ -0.59
HERC3-208ENST00000470815 MIER1Q8N108 512 aa11.33□□□□□ -0.6
HERC3-208ENST00000470815 TSPYL2Q9H2G4 693 aaPredicted RBP11.32□□□□□ -0.6
HERC3-208ENST00000470815 ASTLQ6HA08 431 aaPredicted RBP11.31□□□□□ -0.6
HERC3-208ENST00000470815 PELP1Q8IZL8 1130 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms