RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PCNX1Q96RV3 2341 aa-0.52□□□□□ -2.49
USP40-209ENST00000452724 TOPAZ1Q8N9V7 1692 aa-0.53□□□□□ -2.49
USP40-209ENST00000452724 CLIP1P30622 1438 aa-0.53□□□□□ -2.49
USP40-209ENST00000452724 TRBV7-7A0A0K0K1E9 115 aa-0.53□□□□□ -2.49
USP40-209ENST00000452724 ZNF720Q7Z2F6 126 aa-0.53□□□□□ -2.49
USP40-209ENST00000452724 PDZD2O15018 2839 aa-0.53□□□□□ -2.49
USP40-209ENST00000452724 FMN2Q9NZ56 1722 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 SPTY2D1-AS1A0A0U1RR47 76 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 ETDBQ3ZM63 59 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 COL5A1-AS1Q5SY13 56 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 FYCO1Q9BQS8 1478 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 NRXN1Q9ULB1 1477 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 STAB2Q8WWQ8 2551 aa-0.54□□□□□ -2.5
USP40-209ENST00000452724 LRRC37AA6NMS7 1700 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 CHD1O14646 1710 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 UQCRHLA0A096LP55 91 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 D6R8Y8 96 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 MUSTN1Q8IVN3 82 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 PSENENQ9NZ42 101 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 CDKN2A-AS1Q9UH64 79 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 SAMD9Q5K651 1589 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 CNTLNQ9NXG0 1405 aa-0.55□□□□□ -2.5
USP40-209ENST00000452724 PDCD11Q14690 1871 aaKnown RBP-0.56□□□□□ -2.5
USP40-209ENST00000452724 LEPROTL1O95214 131 aa-0.56□□□□□ -2.5
USP40-209ENST00000452724 IGLC2P0DOY2 106 aa-0.56□□□□□ -2.5
USP40-209ENST00000452724 IGLC3P0DOY3 106 aa-0.56□□□□□ -2.5
USP40-209ENST00000452724 FAUP35544 74 aaKnown RBP-0.56□□□□□ -2.5
USP40-209ENST00000452724 HIGD1BQ9P298 99 aa-0.56□□□□□ -2.5
USP40-209ENST00000452724 TARBP1Q13395 1621 aaKnown RBP-0.56□□□□□ -2.5
USP40-209ENST00000452724 NBEAL1Q6ZS30 2694 aa-0.57□□□□□ -2.5
USP40-209ENST00000452724 PAPPA2Q9BXP8 1791 aa-0.57□□□□□ -2.5
USP40-209ENST00000452724 F8WEM9 126 aa-0.57□□□□□ -2.5
USP40-209ENST00000452724 M0R143 59 aa-0.57□□□□□ -2.5
USP40-209ENST00000452724 KRTAP6-2Q3LI66 62 aa-0.57□□□□□ -2.5
USP40-209ENST00000452724 MARF1Q9Y4F3 1742 aaKnown RBP-0.58□□□□□ -2.5
USP40-209ENST00000452724 EPRSP07814 1512 aaKnown RBP-0.58□□□□□ -2.5
USP40-209ENST00000452724 CUX1P39880 1505 aa-0.58□□□□□ -2.5
USP40-209ENST00000452724 HEPN1Q6WQI6 88 aa-0.58□□□□□ -2.5
USP40-209ENST00000452724 PKHD1P08F94 4074 aa-0.58□□□□□ -2.5
USP40-209ENST00000452724 KNDC1Q76NI1 1749 aa-0.58□□□□□ -2.5
USP40-209ENST00000452724 NMSQ5H8A3 153 aa-0.59□□□□□ -2.5
USP40-209ENST00000452724 NCMAPQ5T1S8 102 aa-0.59□□□□□ -2.5
USP40-209ENST00000452724 UBE2D4Q9Y2X8 147 aa-0.59□□□□□ -2.5
USP40-209ENST00000452724 ABCA3Q99758 1704 aa-0.59□□□□□ -2.5
USP40-209ENST00000452724 SHPRHQ149N8 1683 aa-0.59□□□□□ -2.5
USP40-209ENST00000452724 MAP1AP78559 2803 aaPredicted RBP-0.6□□□□□ -2.5
USP40-209ENST00000452724 SPRR2EP22531 72 aa-0.6□□□□□ -2.51
USP40-209ENST00000452724 DEFB112Q30KQ8 113 aa-0.6□□□□□ -2.51
USP40-209ENST00000452724 WFDC13Q8IUB5 93 aa-0.6□□□□□ -2.51
USP40-209ENST00000452724 GYPAP02724 150 aa-0.61□□□□□ -2.51
USP40-209ENST00000452724 SMIM11AP58511 58 aa-0.61□□□□□ -2.51
USP40-209ENST00000452724 COX6B2Q6YFQ2 88 aa-0.61□□□□□ -2.51
USP40-209ENST00000452724 KIAA1551Q9HCM1 1747 aa-0.61□□□□□ -2.51
USP40-209ENST00000452724 VPS8Q8N3P4 1428 aa-0.62□□□□□ -2.51
USP40-209ENST00000452724 LELP1Q5T871 98 aa-0.62□□□□□ -2.51
USP40-209ENST00000452724 FANCAO15360 1455 aa-0.62□□□□□ -2.51
USP40-209ENST00000452724 FLGP20930 4061 aaPredicted RBP-0.62□□□□□ -2.51
USP40-209ENST00000452724 SVEP1Q4LDE5 3571 aa-0.62□□□□□ -2.51
USP40-209ENST00000452724 COX7BP24311 80 aa-0.63□□□□□ -2.51
USP40-209ENST00000452724 MAGI2Q86UL8 1455 aa-0.63□□□□□ -2.51
USP40-209ENST00000452724 SETD2Q9BYW2 2564 aaPredicted RBP-0.63□□□□□ -2.51
USP40-209ENST00000452724 ATP10BO94823 1461 aa-0.64□□□□□ -2.51
USP40-209ENST00000452724 S100A8P05109 93 aa-0.64□□□□□ -2.51
USP40-209ENST00000452724 HMGN2P05204 90 aaKnown RBP-0.64□□□□□ -2.51
USP40-209ENST00000452724 PEG3Q9GZU2 1588 aa-0.65□□□□□ -2.51
USP40-209ENST00000452724 KRTAP19-8Q3LI54 63 aa-0.65□□□□□ -2.51
USP40-209ENST00000452724 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.66□□□□□ -2.51
USP40-209ENST00000452724 PTPN23Q9H3S7 1636 aa-0.66□□□□□ -2.51
USP40-209ENST00000452724 A0A1B0GUT8 65 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 H0YGG7 62 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 PKIAP61925 76 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 RPL38P63173 70 aaKnown RBP-0.66□□□□□ -2.52
USP40-209ENST00000452724 PLGLAQ15195 96 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 SNHG12Q9BXW3 62 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 LAMA5O15230 3695 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 HERC1Q15751 4861 aa-0.66□□□□□ -2.52
USP40-209ENST00000452724 ABCC10Q5T3U5 1492 aa-0.67□□□□□ -2.52
USP40-209ENST00000452724 C5P01031 1676 aa-0.67□□□□□ -2.52
USP40-209ENST00000452724 PEA15Q15121 130 aa-0.67□□□□□ -2.52
USP40-209ENST00000452724 NF1P21359 2839 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 FAT1Q14517 4588 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 CREBBPQ92793 2442 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 ADAMTS12P58397 1594 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 MON2Q7Z3U7 1717 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 C20orf78Q9BR46 151 aa-0.68□□□□□ -2.52
USP40-209ENST00000452724 TGP01266 2768 aa-0.69□□□□□ -2.52
USP40-209ENST00000452724 CYB5AP00167 134 aa-0.69□□□□□ -2.52
USP40-209ENST00000452724 PYY3Q5JQD4 70 aa-0.69□□□□□ -2.52
USP40-209ENST00000452724 GAFA1Q96PS6 74 aa-0.69□□□□□ -2.52
USP40-209ENST00000452724 CICQ96RK0 1608 aaPredicted RBP-0.69□□□□□ -2.52
USP40-209ENST00000452724 ATP7BP35670 1465 aa-0.7□□□□□ -2.52
USP40-209ENST00000452724 KMT2CQ8NEZ4 4911 aaKnown RBP-0.7□□□□□ -2.52
USP40-209ENST00000452724 SONP18583 2426 aaKnown RBP-0.7□□□□□ -2.52
USP40-209ENST00000452724 TROQ12816 1431 aaPredicted RBP-0.71□□□□□ -2.52
USP40-209ENST00000452724 KNL1Q8NG31 2342 aa-0.71□□□□□ -2.52
USP40-209ENST00000452724 CLTCQ00610 1675 aaKnown RBP-0.71□□□□□ -2.52
USP40-209ENST00000452724 ANKRD36A6QL64 1941 aa-0.71□□□□□ -2.52
USP40-209ENST00000452724 LRRC9Q6ZRR7 1453 aa-0.71□□□□□ -2.52
USP40-209ENST00000452724 IQCF6A8MYZ5 107 aa-0.71□□□□□ -2.52
USP40-209ENST00000452724 NDUFA3O95167 84 aa-0.71□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms