RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 AEBP2Q6ZN18 517 aaPredicted RBP23.78■■□□□ 1.4
USP40-209ENST00000452724 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
USP40-209ENST00000452724 SENP3Q9H4L4 574 aaPredicted RBP20.39■□□□□ 0.85
USP40-209ENST00000452724 PHF23Q9BUL5 403 aaPredicted RBP20.1■□□□□ 0.81
USP40-209ENST00000452724 FOXD1Q16676 465 aa18.87■□□□□ 0.61
USP40-209ENST00000452724 PLPPR3Q6T4P5 718 aa18.55■□□□□ 0.56
USP40-209ENST00000452724 ADRA2BP18089 450 aa17.82■□□□□ 0.44
USP40-209ENST00000452724 PPP6R1Q9UPN7 881 aa17.82■□□□□ 0.44
USP40-209ENST00000452724 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.44
USP40-209ENST00000452724 MSH5O43196 834 aa17.66■□□□□ 0.42
USP40-209ENST00000452724 POTEDQ86YR6 584 aa16.61■□□□□ 0.25
USP40-209ENST00000452724 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
USP40-209ENST00000452724 MAPK8IP2Q13387 824 aaPredicted RBP16.25■□□□□ 0.19
USP40-209ENST00000452724 PPP4R3CPQ6ZMV5 832 aa16.25■□□□□ 0.19
USP40-209ENST00000452724 DMRT2Q9Y5R5 561 aa16.17■□□□□ 0.18
USP40-209ENST00000452724 CNKSR2Q8WXI2 1034 aa15.91■□□□□ 0.14
USP40-209ENST00000452724 NCBP3Q53F19 620 aaKnown RBP15.82■□□□□ 0.12
USP40-209ENST00000452724 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
USP40-209ENST00000452724 HOXD11P31277 338 aaPredicted RBP15.68■□□□□ 0.1
USP40-209ENST00000452724 DCAF8L1A6NGE4 600 aa15.54■□□□□ 0.08
USP40-209ENST00000452724 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
USP40-209ENST00000452724 KCNA4P22459 653 aa15.42■□□□□ 0.06
USP40-209ENST00000452724 DNAJC5BQ9UF47 199 aa15.14■□□□□ 0.01
USP40-209ENST00000452724 RNF39Q9H2S5 420 aa15.02■□□□□ -0
USP40-209ENST00000452724 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.01□□□□□ -0.011e-7■□□□□ 8.2
USP40-209ENST00000452724 CACNB1Q02641 598 aaPredicted RBP14.95□□□□□ -0.02
USP40-209ENST00000452724 C1QBPQ07021 282 aaKnown RBP14.88□□□□□ -0.03
USP40-209ENST00000452724 SLC4A1APQ9BWU0 796 aaKnown RBP14.69□□□□□ -0.06
USP40-209ENST00000452724 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
USP40-209ENST00000452724 U3KPZ7 1027 aaPredicted RBP14.64□□□□□ -0.07
USP40-209ENST00000452724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
USP40-209ENST00000452724 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
USP40-209ENST00000452724 APLP2Q06481 763 aa14.46□□□□□ -0.09
USP40-209ENST00000452724 MYCNP04198 464 aaPredicted RBP14.38□□□□□ -0.11
USP40-209ENST00000452724 SAMD1Q6SPF0 538 aaPredicted RBP14.38□□□□□ -0.11
USP40-209ENST00000452724 CAPN15O75808 1086 aa14.37□□□□□ -0.11
USP40-209ENST00000452724 FOXD4L1Q9NU39 408 aa14.36□□□□□ -0.11
USP40-209ENST00000452724 SPINK5Q9NQ38 1064 aaPredicted RBP14.32□□□□□ -0.12
USP40-209ENST00000452724 ZNF219Q9P2Y4 722 aaPredicted RBP14.24□□□□□ -0.13
USP40-209ENST00000452724 TRHP20396 242 aaPredicted RBP14.21□□□□□ -0.13
USP40-209ENST00000452724 DSG3P32926 999 aa14.16□□□□□ -0.14
USP40-209ENST00000452724 ZBTB22O15209 634 aa14.13□□□□□ -0.15
USP40-209ENST00000452724 ABCB7O75027 752 aa14.02□□□□□ -0.17
USP40-209ENST00000452724 ATXN8OSP0DMR3 200 aa13.93□□□□□ -0.18
USP40-209ENST00000452724 ATF5Q9Y2D1 282 aaPredicted RBP13.88□□□□□ -0.19
USP40-209ENST00000452724 POLA2Q14181 598 aa13.87□□□□□ -0.19
USP40-209ENST00000452724 EHMT2Q96KQ7 1210 aa13.83□□□□□ -0.2
USP40-209ENST00000452724 CSRNP3Q8WYN3 585 aa13.79□□□□□ -0.2
USP40-209ENST00000452724 ZBTB12Q9Y330 459 aaPredicted RBP13.73□□□□□ -0.21
USP40-209ENST00000452724 RBM42Q9BTD8 480 aaKnown RBP13.62□□□□□ -0.23
USP40-209ENST00000452724 FBLN2P98095 1184 aa13.5□□□□□ -0.25
USP40-209ENST00000452724 OSCARQ8IYS5 282 aa13.4□□□□□ -0.26
USP40-209ENST00000452724 AKT1S1Q96B36 256 aa13.32□□□□□ -0.28
USP40-209ENST00000452724 MKRN4PQ13434 485 aaPredicted RBP13.28□□□□□ -0.28
USP40-209ENST00000452724 SPDYE2BA6NHP3 402 aa13.27□□□□□ -0.29
USP40-209ENST00000452724 SPDYE6P0CI01 402 aa13.27□□□□□ -0.29
USP40-209ENST00000452724 SPDYE2Q495Y8 402 aa13.27□□□□□ -0.29
USP40-209ENST00000452724 REM2Q8IYK8 340 aaPredicted RBP13.16□□□□□ -0.3
USP40-209ENST00000452724 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
USP40-209ENST00000452724 POTEHQ6S545 545 aa13.12□□□□□ -0.31
USP40-209ENST00000452724 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
USP40-209ENST00000452724 SSUH2Q9Y2M2 353 aa13.07□□□□□ -0.32
USP40-209ENST00000452724 PITPNM1O00562 1244 aa13□□□□□ -0.33
USP40-209ENST00000452724 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
USP40-209ENST00000452724 PABPN1Q86U42 306 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP40-209ENST00000452724 CLEC11AQ9Y240 323 aa12.92□□□□□ -0.34
USP40-209ENST00000452724 SPDYE4A6NLX3 237 aa12.9□□□□□ -0.34
USP40-209ENST00000452724 PIP4P2Q8N4L2 257 aa12.85□□□□□ -0.35
USP40-209ENST00000452724 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP40-209ENST00000452724 PRR29P0C7W0 189 aa12.76□□□□□ -0.37
USP40-209ENST00000452724 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
USP40-209ENST00000452724 PRKAR2AP13861 404 aaKnown RBP12.7□□□□□ -0.38
USP40-209ENST00000452724 HAX1O00165 279 aa12.59□□□□□ -0.39
USP40-209ENST00000452724 PROM2Q8N271 834 aa12.58□□□□□ -0.4
USP40-209ENST00000452724 CHADLQ6NUI6 762 aa12.57□□□□□ -0.4
USP40-209ENST00000452724 FKBP8Q14318 412 aa12.55□□□□□ -0.4
USP40-209ENST00000452724 FARP1Q9Y4F1 1045 aaPredicted RBP12.46□□□□□ -0.41
USP40-209ENST00000452724 SP7Q8TDD2 431 aaPredicted RBP12.45□□□□□ -0.42
USP40-209ENST00000452724 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
USP40-209ENST00000452724 C19orf67A6NJJ6 358 aa12.41□□□□□ -0.42
USP40-209ENST00000452724 PLEKHG5O94827 1062 aa12.37□□□□□ -0.43
USP40-209ENST00000452724 NPM1P06748 294 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP40-209ENST00000452724 CD44P16070 742 aaKnown RBP12.33□□□□□ -0.44
USP40-209ENST00000452724 EVX2Q03828 476 aa12.32□□□□□ -0.44
USP40-209ENST00000452724 MIER1Q8N108 512 aa12.3□□□□□ -0.44
USP40-209ENST00000452724 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
USP40-209ENST00000452724 PAK3O75914 559 aaPredicted RBP12.26□□□□□ -0.45
USP40-209ENST00000452724 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
USP40-209ENST00000452724 MNX1P50219 401 aaPredicted RBP12.23□□□□□ -0.45
USP40-209ENST00000452724 ZBTB47Q9UFB7 747 aaPredicted RBP12.2□□□□□ -0.46
USP40-209ENST00000452724 CLCN6P51797 869 aa12.19□□□□□ -0.46
USP40-209ENST00000452724 ZRANB1Q9UGI0 708 aa12.19□□□□□ -0.46
USP40-209ENST00000452724 GABBR2O75899 941 aa12.14□□□□□ -0.47
USP40-209ENST00000452724 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
USP40-209ENST00000452724 VASPP50552 380 aaPredicted RBP12.06□□□□□ -0.48
USP40-209ENST00000452724 TSPYL2Q9H2G4 693 aaPredicted RBP12.05□□□□□ -0.48
USP40-209ENST00000452724 PHF12Q96QT6 1004 aa12.01□□□□□ -0.49
USP40-209ENST00000452724 KLHL34Q8N239 644 aa11.99□□□□□ -0.49
USP40-209ENST00000452724 RASEFQ8IZ41 740 aa11.98□□□□□ -0.49
USP40-209ENST00000452724 FAM212AQ96EL1 285 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms