RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 LINC01620Q4KN68 170 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 C5orf38Q86SI9 138 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 NHLRC4P0CG21 123 aaPredicted RBP10.81□□□□□ -0.68
CLN3-251ENST00000636853 CIRBPQ14011 172 aaKnown RBP10.81□□□□□ -0.68
CLN3-251ENST00000636853 Q8N3U1 123 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 TOMM7Q9P0U1 55 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 MEIG1Q5JSS6 88 aa10.79□□□□□ -0.68
CLN3-251ENST00000636853 MAST4O15021 2626 aa10.79□□□□□ -0.68
CLN3-251ENST00000636853 NDUFV3P56181 108 aaKnown RBP10.79□□□□□ -0.68
CLN3-251ENST00000636853 COX7B2Q8TF08 81 aa10.79□□□□□ -0.68
CLN3-251ENST00000636853 XCL1P47992 114 aa10.78□□□□□ -0.68
CLN3-251ENST00000636853 A0A087WZ39 114 aa10.78□□□□□ -0.68
CLN3-251ENST00000636853 NTN5Q8WTR8 489 aaPredicted RBP10.78□□□□□ -0.68
CLN3-251ENST00000636853 IFITM1P13164 125 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 FAM240AA0A1B0GVK7 77 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 H3BT86 120 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 HERV-K104P63124 156 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 SS18Q15532 418 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 Q1RN00 199 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 LINC00269Q8N2A0 174 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 LINC00308Q8TCZ7 52 aa10.77□□□□□ -0.69
CLN3-251ENST00000636853 TRAV8-4A0A0B4J246 113 aa10.76□□□□□ -0.69
CLN3-251ENST00000636853 ICOSQ9Y6W8 199 aa10.76□□□□□ -0.69
CLN3-251ENST00000636853 DEFB121Q5J5C9 76 aa10.75□□□□□ -0.69
CLN3-251ENST00000636853 ANGP03950 147 aaKnown RBP10.75□□□□□ -0.69
CLN3-251ENST00000636853 TTC32Q5I0X7 151 aa10.75□□□□□ -0.69
CLN3-251ENST00000636853 SOSTDC1Q6X4U4 206 aa10.75□□□□□ -0.69
CLN3-251ENST00000636853 UBE2WQ96B02 151 aa10.74□□□□□ -0.69
CLN3-251ENST00000636853 SS18L2Q9UHA2 77 aa10.73□□□□□ -0.69
CLN3-251ENST00000636853 DNAH3Q8TD57 4116 aa10.73□□□□□ -0.69
CLN3-251ENST00000636853 TRIAP1O43715 76 aa10.73□□□□□ -0.69
CLN3-251ENST00000636853 COX6CP09669 75 aa10.73□□□□□ -0.69
CLN3-251ENST00000636853 C11orf68Q9H3H3 251 aaKnown RBP10.73□□□□□ -0.69
CLN3-251ENST00000636853 IGLV10-54A0A075B6I4 117 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 LELP1Q5T871 98 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 COL6A5A8TX70 2615 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 B5MCH6 92 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 REG3AQ06141 175 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 Q6ZTC4 211 aa10.72□□□□□ -0.69
CLN3-251ENST00000636853 C2orf82Q6UX34 121 aa10.7□□□□□ -0.7
CLN3-251ENST00000636853 C15orf53Q8NAA6 179 aa10.7□□□□□ -0.7
CLN3-251ENST00000636853 TEX49A0A1B0GTD5 131 aa10.7□□□□□ -0.7
CLN3-251ENST00000636853 PRB2P02812 416 aaPredicted RBP10.7□□□□□ -0.7
CLN3-251ENST00000636853 CHCHD10Q8WYQ3 142 aaPredicted RBP10.7□□□□□ -0.7
CLN3-251ENST00000636853 A0A0J9YWU9 116 aa10.69□□□□□ -0.7
CLN3-251ENST00000636853 C6orf226Q5I0X4 101 aa10.69□□□□□ -0.7
CLN3-251ENST00000636853 LYPD5Q6UWN5 251 aa10.69□□□□□ -0.7
CLN3-251ENST00000636853 MIR7-3HGQ8N6C7 128 aa10.69□□□□□ -0.7
CLN3-251ENST00000636853 LST1O00453 97 aa10.68□□□□□ -0.7
CLN3-251ENST00000636853 LINC00158P58513 81 aa10.68□□□□□ -0.7
CLN3-251ENST00000636853 CD164L2Q6UWJ8 174 aa10.68□□□□□ -0.7
CLN3-251ENST00000636853 TENM3Q9P273 2699 aa10.68□□□□□ -0.7
CLN3-251ENST00000636853 KPRPQ5T749 579 aaPredicted RBP10.68□□□□□ -0.7
CLN3-251ENST00000636853 COPS9Q8WXC6 57 aa10.68□□□□□ -0.7
CLN3-251ENST00000636853 TRBV7-7A0A0K0K1E9 115 aa10.67□□□□□ -0.7
CLN3-251ENST00000636853 PFN2P35080 140 aa10.67□□□□□ -0.7
CLN3-251ENST00000636853 COX7A2LO14548 114 aa10.67□□□□□ -0.7
CLN3-251ENST00000636853 NANOS2P60321 138 aaKnown RBP10.67□□□□□ -0.7
CLN3-251ENST00000636853 NOTCH1P46531 2555 aa10.66□□□□□ -0.7
CLN3-251ENST00000636853 KLK12Q9UKR0 248 aa10.66□□□□□ -0.7
CLN3-251ENST00000636853 CCDC179H3BU77 68 aa10.65□□□□□ -0.7
CLN3-251ENST00000636853 ACYP1P07311 99 aa10.65□□□□□ -0.7
CLN3-251ENST00000636853 Q8IZM0 81 aa10.65□□□□□ -0.7
CLN3-251ENST00000636853 IBA57-AS1B1ANH7 110 aa10.65□□□□□ -0.7
CLN3-251ENST00000636853 IMUPQ9GZP8 106 aa10.65□□□□□ -0.7
CLN3-251ENST00000636853 LINC01561Q8N1V8 128 aa10.64□□□□□ -0.71
CLN3-251ENST00000636853 MALP21145 153 aa10.64□□□□□ -0.71
CLN3-251ENST00000636853 H3BNG1 76 aa10.63□□□□□ -0.71
CLN3-251ENST00000636853 C11orf45Q8TAV5 145 aa10.63□□□□□ -0.71
CLN3-251ENST00000636853 KIAA0087Q14695 138 aa10.62□□□□□ -0.71
CLN3-251ENST00000636853 WFDC10BQ8IUB3 73 aa10.62□□□□□ -0.71
CLN3-251ENST00000636853 CLEC2BQ92478 149 aa10.62□□□□□ -0.71
CLN3-251ENST00000636853 SND1-IT1Q9HBX3 110 aa10.62□□□□□ -0.71
CLN3-251ENST00000636853 CCL18P55774 89 aa10.61□□□□□ -0.71
CLN3-251ENST00000636853 ENHOQ6UWT2 76 aa10.61□□□□□ -0.71
CLN3-251ENST00000636853 PRR34Q9NV39 138 aa10.61□□□□□ -0.71
CLN3-251ENST00000636853 DEFB131BA0A096LNP1 70 aa10.61□□□□□ -0.71
CLN3-251ENST00000636853 PPDPFQ9H3Y8 114 aa10.61□□□□□ -0.71
CLN3-251ENST00000636853 CFAP161Q6P656 301 aa10.6□□□□□ -0.71
CLN3-251ENST00000636853 MRAPQ8TCY5 172 aa10.6□□□□□ -0.71
CLN3-251ENST00000636853 TMEM126AQ9H061 195 aa10.6□□□□□ -0.71
CLN3-251ENST00000636853 IGKV2-28A0A075B6P5 120 aa10.59□□□□□ -0.71
CLN3-251ENST00000636853 IGKV2D-28P01615 120 aa10.59□□□□□ -0.71
CLN3-251ENST00000636853 ESRGQ1W209 222 aa10.59□□□□□ -0.71
CLN3-251ENST00000636853 K7EIL1 84 aa10.59□□□□□ -0.71
CLN3-251ENST00000636853 LINC00337Q8N6G1 96 aa10.58□□□□□ -0.72
CLN3-251ENST00000636853 CRPP02741 224 aa10.57□□□□□ -0.72
CLN3-251ENST00000636853 LINC00526Q96FQ7 95 aa10.57□□□□□ -0.72
CLN3-251ENST00000636853 NBEAL1Q6ZS30 2694 aa10.57□□□□□ -0.72
CLN3-251ENST00000636853 C9orf116Q5BN46 136 aaPredicted RBP10.56□□□□□ -0.72
CLN3-251ENST00000636853 C6orf223Q8N319 242 aa10.56□□□□□ -0.72
CLN3-251ENST00000636853 TRAV13-2A0A0B4J235 113 aa10.56□□□□□ -0.72
CLN3-251ENST00000636853 SDIM1Q6ZPB5 146 aa10.56□□□□□ -0.72
CLN3-251ENST00000636853 CXCL5P42830 114 aa10.55□□□□□ -0.72
CLN3-251ENST00000636853 HUWE1Q7Z6Z7 4374 aaKnown RBP10.55□□□□□ -0.72
CLN3-251ENST00000636853 SPAG11BQ08648 103 aa10.55□□□□□ -0.72
CLN3-251ENST00000636853 TM2D3Q9BRN9 247 aa10.55□□□□□ -0.72
CLN3-251ENST00000636853 KLK5Q9Y337 293 aaPredicted RBP10.55□□□□□ -0.72
CLN3-251ENST00000636853 LINC00643Q86TS7 51 aa10.54□□□□□ -0.72
CLN3-251ENST00000636853 TRACP01848 142 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms