RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 TRAV23DV6A0A075B6W5 121 aa6.28□□□□□ -1.4
PDLIM5-222ENST00000615540 A0A1B0GX51 115 aa6.28□□□□□ -1.4
PDLIM5-222ENST00000615540 WFDC10BQ8IUB3 73 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 Q8IZM0 81 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 WFDC9Q8NEX5 89 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 UBE2AP49459 152 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 XGP55808 180 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 POLQO75417 2590 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 TRAV10A0A0B4J240 114 aa6.27□□□□□ -1.41
PDLIM5-222ENST00000615540 A0A087WZ39 114 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 KRTAP10-3P60369 221 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 ABCA2Q9BZC7 2435 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 CRYBG3Q68DQ2 2970 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 JMJD7-PLA2G4BH0Y9G9 81 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 AGRNO00468 2067 aa6.26□□□□□ -1.41
PDLIM5-222ENST00000615540 SORL1Q92673 2214 aa6.25□□□□□ -1.41
PDLIM5-222ENST00000615540 KLK5Q9Y337 293 aaPredicted RBP6.25□□□□□ -1.41
PDLIM5-222ENST00000615540 SYCNQ0VAF6 134 aa6.25□□□□□ -1.41
PDLIM5-222ENST00000615540 A8MTW9 85 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 NDUFV3P56181 108 aaKnown RBP6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 LYPD5Q6UWN5 251 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 ENHOQ6UWT2 76 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 HIVEP2P31629 2446 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 UPK3BQ9BT76 320 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 CSDC2Q9Y534 153 aaKnown RBP6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 NREPQ16612 68 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 FAM19A1Q7Z5A9 133 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 KRTAP1-3Q8IUG1 177 aa6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 FUSP35637 526 aaKnown RBP eCLIP6.24□□□□□ -1.41
PDLIM5-222ENST00000615540 X6R8D5 127 aa6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 ASH1LQ9NR48 2969 aaKnown RBP6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 A0A096LNI7 61 aa6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 HIGD2AQ9BW72 106 aa6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 SONP18583 2426 aaKnown RBP6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 COX17Q14061 63 aa6.23□□□□□ -1.41
PDLIM5-222ENST00000615540 NDUFS5O43920 106 aa6.22□□□□□ -1.41
PDLIM5-222ENST00000615540 Q6ZQY7 126 aa6.22□□□□□ -1.41
PDLIM5-222ENST00000615540 ZNF575Q86XF7 245 aa6.22□□□□□ -1.41
PDLIM5-222ENST00000615540 LINC00643Q86TS7 51 aa6.22□□□□□ -1.41
PDLIM5-222ENST00000615540 C3orf84H3BNL1 204 aa6.22□□□□□ -1.41
PDLIM5-222ENST00000615540 TRBV10-3A0A0K0K1G6 114 aa6.21□□□□□ -1.41
PDLIM5-222ENST00000615540 ACACBO00763 2458 aa6.21□□□□□ -1.42
PDLIM5-222ENST00000615540 LINC00337Q8N6G1 96 aa6.21□□□□□ -1.42
PDLIM5-222ENST00000615540 ZNF73O43830 326 aaPredicted RBP6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 PPDPFQ9H3Y8 114 aa6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 M0R378 163 aa6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 IGLV5-39A0A0G2JS06 123 aa6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 SMCPP49901 116 aaPredicted RBP6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 SPATA3Q8NHX4 192 aa6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 ATOX1O00244 68 aa6.2□□□□□ -1.42
PDLIM5-222ENST00000615540 SOSTDC1Q6X4U4 206 aa6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 Q8N814 137 aa6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 CCDC179H3BU77 68 aa6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 RPL28P46779 137 aaKnown RBP6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 NAV2Q8IVL1 2488 aa6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 A0A1B0GUV1 79 aa6.19□□□□□ -1.42
PDLIM5-222ENST00000615540 KRTAP24-1Q3LI83 254 aa6.18□□□□□ -1.42
PDLIM5-222ENST00000615540 DCHS2Q6V1P9 2916 aa6.18□□□□□ -1.42
PDLIM5-222ENST00000615540 H3BQ85 93 aa6.18□□□□□ -1.42
PDLIM5-222ENST00000615540 HRCT1Q6UXD1 115 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 FAM218AQ96MZ4 157 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 Q6ZRU5 148 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 CITED1Q99966 193 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 B9D2Q9BPU9 175 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 SBSPONQ8IVN8 264 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 CSNK1G2-AS1Q8NCQ2 148 aa6.17□□□□□ -1.42
PDLIM5-222ENST00000615540 CCDC168Q8NDH2 2452 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 USP17L23D6RBM5 183 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 LITAFQ99732 161 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 CCKP06307 115 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 GIG44P09565 113 aaPredicted RBP6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 ESRGQ1W209 222 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 C10orf25Q5T742 122 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 SMIM20Q8N5G0 67 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 ZNF462Q96JM2 2506 aa6.16□□□□□ -1.42
PDLIM5-222ENST00000615540 LOC107984640A0A0U1RRK4 108 aa6.15□□□□□ -1.42
PDLIM5-222ENST00000615540 IGLV5-45A0A087WSX0 123 aa6.15□□□□□ -1.42
PDLIM5-222ENST00000615540 IGHV3OR16-9A0A0B4J2B5 98 aa6.15□□□□□ -1.42
PDLIM5-222ENST00000615540 KRTAP10-11P60412 298 aa6.15□□□□□ -1.42
PDLIM5-222ENST00000615540 A0A087WVE0 104 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 KRTAP1-1Q07627 177 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 C14orf177Q52M58 125 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 Q8NAQ8 132 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 IL17DQ8TAD2 202 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 PRO0461Q9UI25 63 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 LRCOL1A6NCL2 159 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 H0Y9J4 135 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 AKAP9Q99996 3911 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 CDIP1Q9H305 208 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 PLAC8L1A1L4L8 177 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 BPY2O14599 106 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 LY6G6CO95867 125 aa6.14□□□□□ -1.43
PDLIM5-222ENST00000615540 EIF4EBP3O60516 100 aaPredicted RBP6.13□□□□□ -1.43
PDLIM5-222ENST00000615540 ANKRD17O75179 2603 aaKnown RBP6.13□□□□□ -1.43
PDLIM5-222ENST00000615540 CREBBPQ92793 2442 aa6.13□□□□□ -1.43
PDLIM5-222ENST00000615540 M0QXV9 152 aa6.13□□□□□ -1.43
PDLIM5-222ENST00000615540 C3orf22Q8N5N4 141 aa6.12□□□□□ -1.43
PDLIM5-222ENST00000615540 PKIGQ9Y2B9 76 aa6.12□□□□□ -1.43
PDLIM5-222ENST00000615540 NOTCH2Q04721 2471 aa6.12□□□□□ -1.43
PDLIM5-222ENST00000615540 EGFEM1PQ0D2K5 195 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms