RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 ALKBH7Q9BT30 221 aaPredicted RBP9.63□□□□□ -0.87
VRK3-221ENST00000600284 GEMIN7Q9H840 131 aaKnown RBP9.63□□□□□ -0.87
VRK3-221ENST00000600284 TOMM7Q9P0U1 55 aa9.63□□□□□ -0.87
VRK3-221ENST00000600284 LINC01546A6NGU7 62 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 IFITM2Q01629 132 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 ODF1Q14990 250 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 COX19Q49B96 90 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 C9orf129Q5T035 196 aaKnown RBP9.62□□□□□ -0.87
VRK3-221ENST00000600284 KRTAP11-1Q8IUC1 163 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 CDKN2A-AS1Q9UH64 79 aa9.62□□□□□ -0.87
VRK3-221ENST00000600284 UBE2BP63146 152 aa9.61□□□□□ -0.87
VRK3-221ENST00000600284 SCGB3A1Q96QR1 104 aa9.61□□□□□ -0.87
VRK3-221ENST00000600284 F8VRH5 84 aa9.6□□□□□ -0.87
VRK3-221ENST00000600284 H0Y9J4 135 aa9.6□□□□□ -0.87
VRK3-221ENST00000600284 CXCL5P42830 114 aa9.6□□□□□ -0.87
VRK3-221ENST00000600284 LRP2P98164 4655 aa9.6□□□□□ -0.87
VRK3-221ENST00000600284 TINCRA0A1B0GVN0 87 aa9.59□□□□□ -0.87
VRK3-221ENST00000600284 IGLV5-45A0A087WSX0 123 aa9.57□□□□□ -0.88
VRK3-221ENST00000600284 PDZD11Q5EBL8 140 aa9.57□□□□□ -0.88
VRK3-221ENST00000600284 LINC00469Q8N7U9 141 aa9.57□□□□□ -0.88
VRK3-221ENST00000600284 SMIM1B2RUZ4 78 aa9.56□□□□□ -0.88
VRK3-221ENST00000600284 LBHQ53QV2 105 aaPredicted RBP9.56□□□□□ -0.88
VRK3-221ENST00000600284 C10orf91Q5T1B1 145 aa9.56□□□□□ -0.88
VRK3-221ENST00000600284 CST9LQ9H4G1 147 aa9.56□□□□□ -0.88
VRK3-221ENST00000600284 C22orf24Q9Y442 160 aa9.56□□□□□ -0.88
VRK3-221ENST00000600284 IGLV1-50A0A075B6I6 118 aa9.55□□□□□ -0.88
VRK3-221ENST00000600284 TP73-AS1Q9UF72 201 aa9.55□□□□□ -0.88
VRK3-221ENST00000600284 NUPR1O60356 82 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 FABP9Q0Z7S8 132 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 PMVKQ15126 192 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 RHEBQ15382 184 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 FA2HQ7L5A8 372 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 COMMD7Q86VX2 200 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 PRR26Q8N8Z3 221 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 COX7B2Q8TF08 81 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 MRPL18Q9H0U6 180 aaKnown RBP9.54□□□□□ -0.88
VRK3-221ENST00000600284 XAGE1AQ9HD64 81 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 SMCO4Q9NRQ5 59 aa9.54□□□□□ -0.88
VRK3-221ENST00000600284 CARHSP1Q9Y2V2 147 aaKnown RBP9.53□□□□□ -0.88
VRK3-221ENST00000600284 ZNF861PO60384 105 aa9.52□□□□□ -0.89
VRK3-221ENST00000600284 KRTAP1-4P0C5Y4 121 aa9.52□□□□□ -0.89
VRK3-221ENST00000600284 RPS10P5Q9NQ39 176 aa9.52□□□□□ -0.89
VRK3-221ENST00000600284 MRPL55Q7Z7F7 128 aaKnown RBP9.51□□□□□ -0.89
VRK3-221ENST00000600284 RNF213Q63HN8 5207 aa9.5□□□□□ -0.89
VRK3-221ENST00000600284 H3BRM9 83 aa9.5□□□□□ -0.89
VRK3-221ENST00000600284 RPL13AP40429 203 aaKnown RBP9.5□□□□□ -0.89
VRK3-221ENST00000600284 SPINK8P0C7L1 97 aa9.49□□□□□ -0.89
VRK3-221ENST00000600284 LINC00614P0C842 121 aa9.47□□□□□ -0.89
VRK3-221ENST00000600284 IGLC3P0DOY3 106 aa9.47□□□□□ -0.89
VRK3-221ENST00000600284 TRAPPC1Q9Y5R8 145 aa9.47□□□□□ -0.89
VRK3-221ENST00000600284 ATP5LO75964 103 aa9.46□□□□□ -0.9
VRK3-221ENST00000600284 IGLV5-37A0A075B6J1 123 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 A0A096LNJ9 63 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 BCE1O60756 84 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 RPL28P46779 137 aaKnown RBP9.45□□□□□ -0.9
VRK3-221ENST00000600284 RAB5BP61020 215 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 C18orf32Q8TCD1 76 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 LINC00167Q96N53 147 aa9.45□□□□□ -0.9
VRK3-221ENST00000600284 HBDP02042 147 aa9.44□□□□□ -0.9
VRK3-221ENST00000600284 URB1-AS1Q96HZ7 61 aa9.44□□□□□ -0.9
VRK3-221ENST00000600284 NDUFA6P56556 154 aa9.43□□□□□ -0.9
VRK3-221ENST00000600284 ZNF22P17026 224 aaPredicted RBP9.42□□□□□ -0.9
VRK3-221ENST00000600284 NKAPP1Q8N9T2 125 aa9.42□□□□□ -0.9
VRK3-221ENST00000600284 RPL37AP8A6NKH3 93 aa9.41□□□□□ -0.9
VRK3-221ENST00000600284 SNAPINO95295 136 aa9.41□□□□□ -0.9
VRK3-221ENST00000600284 APOC3P02656 99 aa9.41□□□□□ -0.9
VRK3-221ENST00000600284 COX17Q14061 63 aa9.41□□□□□ -0.9
VRK3-221ENST00000600284 NDUFA5Q16718 116 aa9.4□□□□□ -0.9
VRK3-221ENST00000600284 SFTA2Q6UW10 78 aa9.4□□□□□ -0.9
VRK3-221ENST00000600284 SVBPQ8N300 66 aa9.4□□□□□ -0.9
VRK3-221ENST00000600284 GAGE10A6NGK3 116 aa9.39□□□□□ -0.91
VRK3-221ENST00000600284 PFN2P35080 140 aa9.39□□□□□ -0.91
VRK3-221ENST00000600284 PMCHL1Q16048 86 aa9.38□□□□□ -0.91
VRK3-221ENST00000600284 BAGE3Q86Y29 109 aa9.38□□□□□ -0.91
VRK3-221ENST00000600284 ERG28Q9UKR5 140 aa9.38□□□□□ -0.91
VRK3-221ENST00000600284 C11orf86A6NJI1 115 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 CRYGAP11844 174 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 UBE2AP49459 152 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 RPL24P83731 157 aaKnown RBP9.36□□□□□ -0.91
VRK3-221ENST00000600284 TMEM170BQ5T4T1 132 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 KRTAP13-1Q8IUC0 172 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 SND1-IT1Q9HBX3 110 aa9.36□□□□□ -0.91
VRK3-221ENST00000600284 LPAP08519 4548 aa9.35□□□□□ -0.91
VRK3-221ENST00000600284 VPREB1P12018 145 aa9.35□□□□□ -0.91
VRK3-221ENST00000600284 CHCHD1Q96BP2 118 aaKnown RBP9.35□□□□□ -0.91
VRK3-221ENST00000600284 IGKV2-28A0A075B6P5 120 aa9.34□□□□□ -0.91
VRK3-221ENST00000600284 IGKV2D-28P01615 120 aa9.34□□□□□ -0.91
VRK3-221ENST00000600284 CHTOPQ9Y3Y2 248 aaKnown RBP9.34□□□□□ -0.91
VRK3-221ENST00000600284 A0A087X002 238 aa9.33□□□□□ -0.92
VRK3-221ENST00000600284 TRAV12-1A0A0B4J245 112 aa9.33□□□□□ -0.92
VRK3-221ENST00000600284 TYMSOSQ8TAI1 123 aa9.33□□□□□ -0.92
VRK3-221ENST00000600284 ZNF625Q96I27 306 aaPredicted RBP9.33□□□□□ -0.92
VRK3-221ENST00000600284 YPEL4Q96NS1 127 aa9.33□□□□□ -0.92
VRK3-221ENST00000600284 PRR4Q16378 134 aa9.32□□□□□ -0.92
VRK3-221ENST00000600284 SCO1O75880 301 aa9.31□□□□□ -0.92
VRK3-221ENST00000600284 FAM229BQ4G0N7 80 aa9.31□□□□□ -0.92
VRK3-221ENST00000600284 TMEM223A0PJW6 202 aa9.3□□□□□ -0.92
VRK3-221ENST00000600284 IFI27L1Q96BM0 104 aa9.3□□□□□ -0.92
VRK3-221ENST00000600284 TMEM126AQ9H061 195 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms