RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CFAP47Q6ZTR5 3102 aa8.87□□□□□ -0.99
LIG1-207ENST00000594759 ATMQ13315 3056 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 MUC4Q99102 2169 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 H3BQ85 93 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 PSPHP1O15172 72 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 Q8N814 137 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 IGHV4-28A0A0C4DH34 117 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 ZNF561-AS1K7EIQ3 104 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 CFAP46Q8IYW2 2715 aa8.86□□□□□ -0.99
LIG1-207ENST00000594759 LINC01547P58512 204 aaPredicted RBP8.85□□□□□ -0.99
LIG1-207ENST00000594759 HIGD2BQ4VC39 106 aa8.85□□□□□ -0.99
LIG1-207ENST00000594759 BCE1O60756 84 aa8.85□□□□□ -0.99
LIG1-207ENST00000594759 PRYO14603 147 aa8.85□□□□□ -0.99
LIG1-207ENST00000594759 DEFB113Q30KQ7 82 aa8.85□□□□□ -0.99
LIG1-207ENST00000594759 NOP10Q9NPE3 64 aaKnown RBP8.85□□□□□ -0.99
LIG1-207ENST00000594759 Q6ZTI0 123 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 A0A087WZ39 114 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 H7BZZ5 65 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 IL17DQ8TAD2 202 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 TRBV6-4A0A1B0GX49 114 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 K7EQG2 157 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 PRR4Q16378 134 aa8.84□□□□□ -0.99
LIG1-207ENST00000594759 DEFB130BP0DP73 79 aa8.83□□□□□ -1
LIG1-207ENST00000594759 DEFB130AP0DP74 79 aa8.83□□□□□ -1
LIG1-207ENST00000594759 APRG1Q8IVJ8 170 aa8.83□□□□□ -1
LIG1-207ENST00000594759 IGLV5-39A0A0G2JS06 123 aa8.83□□□□□ -1
LIG1-207ENST00000594759 OXTP01178 125 aa8.83□□□□□ -1
LIG1-207ENST00000594759 Q6ZVQ6 151 aa8.83□□□□□ -1
LIG1-207ENST00000594759 Q6ZQY7 126 aa8.83□□□□□ -1
LIG1-207ENST00000594759 CDC42SE2Q9NRR3 84 aa8.82□□□□□ -1
LIG1-207ENST00000594759 TRAV10A0A0B4J240 114 aa8.81□□□□□ -1
LIG1-207ENST00000594759 HTN3P15516 51 aa8.81□□□□□ -1
LIG1-207ENST00000594759 SLURP1P55000 103 aa8.81□□□□□ -1
LIG1-207ENST00000594759 C10orf99Q6UWK7 81 aa8.8□□□□□ -1
LIG1-207ENST00000594759 DEFB105AQ8NG35 78 aa8.8□□□□□ -1
LIG1-207ENST00000594759 IGLV10-54A0A075B6I4 117 aa8.79□□□□□ -1
LIG1-207ENST00000594759 DIRC1Q969H9 104 aa8.79□□□□□ -1
LIG1-207ENST00000594759 PLAC8L1A1L4L8 177 aa8.79□□□□□ -1
LIG1-207ENST00000594759 CHKB-CPT1BH3BT56 60 aa8.79□□□□□ -1
LIG1-207ENST00000594759 MP68P56378 58 aa8.79□□□□□ -1
LIG1-207ENST00000594759 KLKP1Q107X0 134 aa8.79□□□□□ -1
LIG1-207ENST00000594759 PRR3P79522 188 aaKnown RBP8.79□□□□□ -1
LIG1-207ENST00000594759 ANGP03950 147 aaKnown RBP8.78□□□□□ -1
LIG1-207ENST00000594759 ZNF843Q8N446 348 aa8.78□□□□□ -1
LIG1-207ENST00000594759 A0A096LPF7 62 aa8.78□□□□□ -1
LIG1-207ENST00000594759 LYRM9A8MSI8 78 aa8.78□□□□□ -1
LIG1-207ENST00000594759 Q6ZSN1 163 aa8.78□□□□□ -1
LIG1-207ENST00000594759 TM2D3Q9BRN9 247 aa8.78□□□□□ -1
LIG1-207ENST00000594759 C9orf129Q5T035 196 aaKnown RBP8.77□□□□□ -1.01
LIG1-207ENST00000594759 IGLV5-45A0A087WSX0 123 aa8.77□□□□□ -1.01
LIG1-207ENST00000594759 Q9UF83 564 aa8.77□□□□□ -1.01
LIG1-207ENST00000594759 AVPP01185 164 aa8.77□□□□□ -1.01
LIG1-207ENST00000594759 KRTAP10-9P60411 292 aa8.77□□□□□ -1.01
LIG1-207ENST00000594759 CELA1Q9UNI1 258 aa8.77□□□□□ -1.01
LIG1-207ENST00000594759 COL12A1Q99715 3063 aa8.76□□□□□ -1.01
LIG1-207ENST00000594759 FLNCQ14315 2725 aa8.76□□□□□ -1.01
LIG1-207ENST00000594759 A6NDX4 124 aa8.76□□□□□ -1.01
LIG1-207ENST00000594759 NANOS2P60321 138 aaKnown RBP8.75□□□□□ -1.01
LIG1-207ENST00000594759 CXCL6P80162 114 aa8.75□□□□□ -1.01
LIG1-207ENST00000594759 KALRNO60229 2985 aa8.75□□□□□ -1.01
LIG1-207ENST00000594759 FAM30AQ9NZY2 134 aa8.75□□□□□ -1.01
LIG1-207ENST00000594759 COX7BP24311 80 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 UBE2BP63146 152 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 IGKV2-28A0A075B6P5 120 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 IGKV2D-28P01615 120 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 BEAN1Q3B7T3 259 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.74□□□□□ -1.01
LIG1-207ENST00000594759 WDFY3Q8IZQ1 3526 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 HELZ2Q9BYK8 2649 aaKnown RBP8.74□□□□□ -1.01
LIG1-207ENST00000594759 A6NED7 52 aa8.74□□□□□ -1.01
LIG1-207ENST00000594759 FLNAP21333 2647 aaKnown RBP8.74□□□□□ -1.01
LIG1-207ENST00000594759 C3orf84H3BNL1 204 aa8.73□□□□□ -1.01
LIG1-207ENST00000594759 BBC3Q96PG8 261 aaPredicted RBP8.73□□□□□ -1.01
LIG1-207ENST00000594759 LINC00269Q8N2A0 174 aa8.73□□□□□ -1.01
LIG1-207ENST00000594759 ITPR3Q14573 2671 aa8.72□□□□□ -1.01
LIG1-207ENST00000594759 LINC00482Q8N8I6 264 aa8.72□□□□□ -1.01
LIG1-207ENST00000594759 C11orf72Q8NBR9 251 aa8.72□□□□□ -1.01
LIG1-207ENST00000594759 HIGD2AQ9BW72 106 aa8.71□□□□□ -1.01
LIG1-207ENST00000594759 USP24Q9UPU5 2620 aa8.71□□□□□ -1.01
LIG1-207ENST00000594759 TACC2O95359 2948 aa8.71□□□□□ -1.02
LIG1-207ENST00000594759 Q8N9L7 120 aa8.71□□□□□ -1.02
LIG1-207ENST00000594759 CCL24O00175 119 aa8.7□□□□□ -1.02
LIG1-207ENST00000594759 UBE2AP49459 152 aa8.7□□□□□ -1.02
LIG1-207ENST00000594759 IGHV4-31P0DP07 118 aa8.7□□□□□ -1.02
LIG1-207ENST00000594759 CD164Q04900 197 aa8.7□□□□□ -1.02
LIG1-207ENST00000594759 FP248Q71RG6 208 aaPredicted RBP8.7□□□□□ -1.02
LIG1-207ENST00000594759 GYPEP15421 78 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 MUC7Q8TAX7 377 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 F8P00451 2351 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 SPAG11BQ08648 103 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 TRBV6-8A0A0A6YYG3 113 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 IGSF10Q6WRI0 2623 aa8.69□□□□□ -1.02
LIG1-207ENST00000594759 LRBAP50851 2863 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 A8MTW9 85 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 CMC4P56277 68 aaPredicted RBP8.68□□□□□ -1.02
LIG1-207ENST00000594759 ATRQ13535 2644 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 LINC00575Q6W349 94 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 Q6ZQT0 140 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 LINC00959A0A1B0GUT2 108 aa8.68□□□□□ -1.02
LIG1-207ENST00000594759 NDUFB1O75438 58 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms