RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SOSTDC1Q6X4U4 206 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 Q8NAQ8 132 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 LINC00308Q8TCZ7 52 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 ANK2Q01484 3957 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 NBEAL1Q6ZS30 2694 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 LINC00959A0A1B0GUT2 108 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 SMIM9A6NGZ8 99 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 SNCGO76070 127 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 ATP5G1P05496 136 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 C2orf82Q6UX34 121 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 SMIM20Q8N5G0 67 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 SPANXDQ9BXN6 97 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 SPANXCQ9NY87 97 aa6.89□□□□□ -1.31
VPS53-206ENST00000570359 A0A0B4J2C4 111 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 LINC00526Q96FQ7 95 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 LYRM9A8MSI8 78 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 MIR7-3HGQ8N6C7 128 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 ANKRD29Q8N6D5 301 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 ICOSQ9Y6W8 199 aa6.88□□□□□ -1.31
VPS53-206ENST00000570359 MGAM2Q2M2H8 2515 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 SPART-AS1P0CW21 52 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 TTC32Q5I0X7 151 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 CCDC179H3BU77 68 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 MRPL23Q16540 153 aaKnown RBP6.87□□□□□ -1.31
VPS53-206ENST00000570359 C6orf226Q5I0X4 101 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 TMEM126AQ9H061 195 aa6.87□□□□□ -1.31
VPS53-206ENST00000570359 LINC00612Q8N6U2 182 aa6.86□□□□□ -1.31
VPS53-206ENST00000570359 SS18Q15532 418 aa6.86□□□□□ -1.31
VPS53-206ENST00000570359 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
VPS53-206ENST00000570359 MIFP14174 115 aa6.86□□□□□ -1.31
VPS53-206ENST00000570359 SLC25A20O43772 301 aa6.85□□□□□ -1.31
VPS53-206ENST00000570359 WFDC9Q8NEX5 89 aa6.85□□□□□ -1.31
VPS53-206ENST00000570359 MRAPQ8TCY5 172 aa6.85□□□□□ -1.31
VPS53-206ENST00000570359 H7C423 109 aa6.85□□□□□ -1.31
VPS53-206ENST00000570359 KLK12Q9UKR0 248 aa6.84□□□□□ -1.31
VPS53-206ENST00000570359 MALP21145 153 aa6.84□□□□□ -1.31
VPS53-206ENST00000570359 REG3AQ06141 175 aa6.84□□□□□ -1.31
VPS53-206ENST00000570359 C9orf116Q5BN46 136 aaPredicted RBP6.84□□□□□ -1.31
VPS53-206ENST00000570359 Q6ZTC4 211 aa6.83□□□□□ -1.32
VPS53-206ENST00000570359 CHCHD10Q8WYQ3 142 aaPredicted RBP6.83□□□□□ -1.32
VPS53-206ENST00000570359 ATXN8Q156A1 80 aa6.83□□□□□ -1.32
VPS53-206ENST00000570359 OR13C6PQ8NH95 151 aa6.83□□□□□ -1.32
VPS53-206ENST00000570359 A0A087WZ39 114 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 TIMM17BO60830 172 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 COX6CP09669 75 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 LINC01620Q4KN68 170 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 FAM19A3Q7Z5A8 133 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 NTN5Q8WTR8 489 aaPredicted RBP6.82□□□□□ -1.32
VPS53-206ENST00000570359 SND1-IT1Q9HBX3 110 aa6.82□□□□□ -1.32
VPS53-206ENST00000570359 A0A0J9YWU9 116 aa6.81□□□□□ -1.32
VPS53-206ENST00000570359 NANOS2P60321 138 aaKnown RBP6.81□□□□□ -1.32
VPS53-206ENST00000570359 PRR3P79522 188 aaKnown RBP6.81□□□□□ -1.32
VPS53-206ENST00000570359 C6orf223Q8N319 242 aa6.81□□□□□ -1.32
VPS53-206ENST00000570359 FAM240AA0A1B0GVK7 77 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 UBE2WQ96B02 151 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 TRBV30A0A0K0K1B3 111 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 TEX49A0A1B0GTD5 131 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 COX7A2LO14548 114 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 CRPP02741 224 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 DEFB121Q5J5C9 76 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 TRAV8-4A0A0B4J246 113 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 CCL18P55774 89 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 WFDC10BQ8IUB3 73 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 LINC00337Q8N6G1 96 aa6.8□□□□□ -1.32
VPS53-206ENST00000570359 TRBV7-7A0A0K0K1E9 115 aa6.79□□□□□ -1.32
VPS53-206ENST00000570359 A0A1B0GUV1 79 aa6.79□□□□□ -1.32
VPS53-206ENST00000570359 KPRPQ5T749 579 aaPredicted RBP6.79□□□□□ -1.32
VPS53-206ENST00000570359 C15orf53Q8NAA6 179 aa6.79□□□□□ -1.32
VPS53-206ENST00000570359 CMYA5Q8N3K9 4069 aa6.78□□□□□ -1.32
VPS53-206ENST00000570359 Q9HAA7 133 aa6.78□□□□□ -1.32
VPS53-206ENST00000570359 TRBV10-2A0A0K0K1G8 114 aa6.78□□□□□ -1.32
VPS53-206ENST00000570359 IGKV2-28A0A075B6P5 120 aa6.77□□□□□ -1.33
VPS53-206ENST00000570359 IGKV2D-28P01615 120 aa6.77□□□□□ -1.33
VPS53-206ENST00000570359 IMUPQ9GZP8 106 aa6.77□□□□□ -1.33
VPS53-206ENST00000570359 LYPD5Q6UWN5 251 aa6.77□□□□□ -1.33
VPS53-206ENST00000570359 HIGD2BQ4VC39 106 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 C5orf47Q569G3 176 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 LELP1Q5T871 98 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 CD164L2Q6UWJ8 174 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 FAM218AQ96MZ4 157 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 C10orf25Q5T742 122 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 UNQ6190/PRO20217Q6UXQ8 127 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 COPS9Q8WXC6 57 aa6.76□□□□□ -1.33
VPS53-206ENST00000570359 NCR3O14931 201 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 SPAG11BQ08648 103 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 IBA57-AS1B1ANH7 110 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 H3BT86 120 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 LST1O00453 97 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 PPDPFQ9H3Y8 114 aa6.75□□□□□ -1.33
VPS53-206ENST00000570359 DEFB131BA0A096LNP1 70 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 Q8IZM0 81 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 C11orf45Q8TAV5 145 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 SMIM11BQ8TCY0 68 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 WIPF1O43516 503 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 ENHOQ6UWT2 76 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 A0A1B0GX51 115 aa6.74□□□□□ -1.33
VPS53-206ENST00000570359 A0A087WYN8 130 aa6.73□□□□□ -1.33
VPS53-206ENST00000570359 TRAV13-2A0A0B4J235 113 aa6.73□□□□□ -1.33
VPS53-206ENST00000570359 SLPIP03973 132 aa6.73□□□□□ -1.33
VPS53-206ENST00000570359 ACYP1P07311 99 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms