RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 TEX43Q6ZNM6 134 aa9.02□□□□□ -0.97
CLN3-228ENST00000567804 CBLN2Q8IUK8 224 aa9.02□□□□□ -0.97
CLN3-228ENST00000567804 TOMM6Q96B49 74 aa9.02□□□□□ -0.97
CLN3-228ENST00000567804 AMELXQ99217 191 aa9.02□□□□□ -0.97
CLN3-228ENST00000567804 URB1-AS1Q96HZ7 61 aa9.01□□□□□ -0.97
CLN3-228ENST00000567804 TRBV30A0A0K0K1B3 111 aa9□□□□□ -0.97
CLN3-228ENST00000567804 M0QXV9 152 aa9□□□□□ -0.97
CLN3-228ENST00000567804 KRTAP1-4P0C5Y4 121 aa9□□□□□ -0.97
CLN3-228ENST00000567804 C18orf32Q8TCD1 76 aa9□□□□□ -0.97
CLN3-228ENST00000567804 VCX2Q9H322 139 aa9□□□□□ -0.97
CLN3-228ENST00000567804 IGLV1-50A0A075B6I6 118 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 NDUFC2-KCTD14E9PQ53 114 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 UBE2BP63146 152 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 C2orf82Q6UX34 121 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 Q6ZN92 141 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 FA2HQ7L5A8 372 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 SCGB3A1Q96QR1 104 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 TIMM17AQ99595 171 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 C2orf88Q9BSF0 95 aa8.99□□□□□ -0.97
CLN3-228ENST00000567804 NPSP0C0P6 89 aa8.98□□□□□ -0.97
CLN3-228ENST00000567804 C9orf129Q5T035 196 aaKnown RBP8.98□□□□□ -0.97
CLN3-228ENST00000567804 A0A096LNJ9 63 aa8.97□□□□□ -0.97
CLN3-228ENST00000567804 G0S2P27469 103 aa8.97□□□□□ -0.97
CLN3-228ENST00000567804 ERASQ7Z444 233 aa8.97□□□□□ -0.97
CLN3-228ENST00000567804 LINC01561Q8N1V8 128 aa8.97□□□□□ -0.97
CLN3-228ENST00000567804 PACRGQ96M98 296 aaPredicted RBP8.97□□□□□ -0.97
CLN3-228ENST00000567804 SMCO4Q9NRQ5 59 aa8.97□□□□□ -0.97
CLN3-228ENST00000567804 PMCHL1Q16048 86 aa8.96□□□□□ -0.98
CLN3-228ENST00000567804 FAM19A3Q7Z5A8 133 aa8.95□□□□□ -0.98
CLN3-228ENST00000567804 LINC00614P0C842 121 aa8.94□□□□□ -0.98
CLN3-228ENST00000567804 PAPPA-AS1Q5QFB9 102 aa8.94□□□□□ -0.98
CLN3-228ENST00000567804 RPL13AP40429 203 aaKnown RBP8.93□□□□□ -0.98
CLN3-228ENST00000567804 CDKN2A-AS1Q9UH64 79 aa8.93□□□□□ -0.98
CLN3-228ENST00000567804 CST9LQ9H4G1 147 aa8.92□□□□□ -0.98
CLN3-228ENST00000567804 PRSS2P07478 247 aa8.91□□□□□ -0.98
CLN3-228ENST00000567804 Q8IZM0 81 aa8.91□□□□□ -0.98
CLN3-228ENST00000567804 TOMM7Q9P0U1 55 aa8.91□□□□□ -0.98
CLN3-228ENST00000567804 LINC01549A6NIU2 74 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 ZNF861PO60384 105 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 HBDP02042 147 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 TRGC2P03986 189 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 CKS1BP61024 79 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 HERVK_113P63121 156 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 PMVKQ15126 192 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 PDZD11Q5EBL8 140 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 LINC00469Q8N7U9 141 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 GEMIN7Q9H840 131 aaKnown RBP8.9□□□□□ -0.98
CLN3-228ENST00000567804 C22orf24Q9Y442 160 aa8.9□□□□□ -0.98
CLN3-228ENST00000567804 MUC2Q02817 5179 aa8.9□□□□□ -0.99
CLN3-228ENST00000567804 COLCA2A8K830 154 aa8.89□□□□□ -0.99
CLN3-228ENST00000567804 NUPR1O60356 82 aa8.89□□□□□ -0.99
CLN3-228ENST00000567804 SEC11AP67812 179 aa8.89□□□□□ -0.99
CLN3-228ENST00000567804 PRR4Q16378 134 aa8.89□□□□□ -0.99
CLN3-228ENST00000567804 C6orf226Q5I0X4 101 aa8.89□□□□□ -0.99
CLN3-228ENST00000567804 IGLV5-45A0A087WSX0 123 aa8.88□□□□□ -0.99
CLN3-228ENST00000567804 TINCRA0A1B0GVN0 87 aa8.88□□□□□ -0.99
CLN3-228ENST00000567804 SCO1O75880 301 aa8.88□□□□□ -0.99
CLN3-228ENST00000567804 RAB5BP61020 215 aa8.88□□□□□ -0.99
CLN3-228ENST00000567804 XAGE1AQ9HD64 81 aa8.88□□□□□ -0.99
CLN3-228ENST00000567804 SMIM1B2RUZ4 78 aa8.87□□□□□ -0.99
CLN3-228ENST00000567804 NDUFA6P56556 154 aa8.87□□□□□ -0.99
CLN3-228ENST00000567804 LBHQ53QV2 105 aaPredicted RBP8.86□□□□□ -0.99
CLN3-228ENST00000567804 F8VRH5 84 aa8.85□□□□□ -0.99
CLN3-228ENST00000567804 SPINK8P0C7L1 97 aa8.85□□□□□ -0.99
CLN3-228ENST00000567804 LINC00310P59036 64 aa8.85□□□□□ -0.99
CLN3-228ENST00000567804 CHCHD1Q96BP2 118 aaKnown RBP8.85□□□□□ -0.99
CLN3-228ENST00000567804 TP73-AS1Q9UF72 201 aa8.85□□□□□ -0.99
CLN3-228ENST00000567804 ATP5LO75964 103 aa8.84□□□□□ -0.99
CLN3-228ENST00000567804 IGLC3P0DOY3 106 aa8.84□□□□□ -0.99
CLN3-228ENST00000567804 FAM19A2Q8N3H0 131 aa8.84□□□□□ -0.99
CLN3-228ENST00000567804 CXCL5P42830 114 aa8.83□□□□□ -1
CLN3-228ENST00000567804 MRPL55Q7Z7F7 128 aaKnown RBP8.83□□□□□ -1
CLN3-228ENST00000567804 BAGE3Q86Y29 109 aa8.83□□□□□ -1
CLN3-228ENST00000567804 A0A087X002 238 aa8.82□□□□□ -1
CLN3-228ENST00000567804 BCE1O60756 84 aa8.82□□□□□ -1
CLN3-228ENST00000567804 ZNF22P17026 224 aaPredicted RBP8.82□□□□□ -1
CLN3-228ENST00000567804 RPL28P46779 137 aaKnown RBP8.82□□□□□ -1
CLN3-228ENST00000567804 C11orf86A6NJI1 115 aa8.81□□□□□ -1
CLN3-228ENST00000567804 SERF1AO75920 110 aa8.81□□□□□ -1
CLN3-228ENST00000567804 TSPAN13O95857 204 aa8.81□□□□□ -1
CLN3-228ENST00000567804 COX7B2Q8TF08 81 aa8.81□□□□□ -1
CLN3-228ENST00000567804 HSBP1O75506 76 aa8.8□□□□□ -1
CLN3-228ENST00000567804 IFI27L1Q96BM0 104 aa8.8□□□□□ -1
CLN3-228ENST00000567804 LINC00167Q96N53 147 aa8.79□□□□□ -1
CLN3-228ENST00000567804 MUC17Q685J3 4493 aa8.78□□□□□ -1
CLN3-228ENST00000567804 IGLV5-39A0A0G2JS06 123 aa8.78□□□□□ -1
CLN3-228ENST00000567804 RPL37AP8A6NKH3 93 aa8.78□□□□□ -1
CLN3-228ENST00000567804 H3BRM9 83 aa8.78□□□□□ -1
CLN3-228ENST00000567804 CRYGAP11844 174 aa8.78□□□□□ -1
CLN3-228ENST00000567804 TYMSOSQ8TAI1 123 aa8.78□□□□□ -1
CLN3-228ENST00000567804 CHTOPQ9Y3Y2 248 aaKnown RBP8.78□□□□□ -1
CLN3-228ENST00000567804 IGLV5-37A0A075B6J1 123 aa8.76□□□□□ -1.01
CLN3-228ENST00000567804 TRAV12-1A0A0B4J245 112 aa8.76□□□□□ -1.01
CLN3-228ENST00000567804 TMEM170BQ5T4T1 132 aa8.76□□□□□ -1.01
CLN3-228ENST00000567804 GAGE10A6NGK3 116 aa8.75□□□□□ -1.01
CLN3-228ENST00000567804 KRTAP13-1Q8IUC0 172 aa8.75□□□□□ -1.01
CLN3-228ENST00000567804 A0A0U1RQV1 116 aa8.74□□□□□ -1.01
CLN3-228ENST00000567804 H0Y8G0 127 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BKO60814 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 LEPROTL1O95214 131 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms