RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 COL5A1-AS1Q5SY13 56 aa0.24□□□□□ -2.37
SCFD1-209ENST00000553280 PTPRQQ9UMZ3 2332 aa0.24□□□□□ -2.37
SCFD1-209ENST00000553280 CCNB3Q8WWL7 1395 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 GPR98Q8WXG9 6306 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 H3BQF6 201 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 SYS1-DBNDD2H3BUS1 97 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 USF3Q68DE3 2245 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 PIEZO2Q9H5I5 2752 aa0.23□□□□□ -2.37
SCFD1-209ENST00000553280 NRXN1Q9ULB1 1477 aa0.22□□□□□ -2.37
SCFD1-209ENST00000553280 PDCD11Q14690 1871 aaKnown RBP0.22□□□□□ -2.37
SCFD1-209ENST00000553280 TRBV7-7A0A0K0K1E9 115 aa0.22□□□□□ -2.37
SCFD1-209ENST00000553280 ABCC2Q92887 1545 aa0.22□□□□□ -2.37
SCFD1-209ENST00000553280 CSMD3Q7Z407 3707 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 KIAA0556O60303 1618 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 PKIAP61925 76 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 SNHG12Q9BXW3 62 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 PKDREJQ9NTG1 2253 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 NCOR1O75376 2440 aa0.21□□□□□ -2.38
SCFD1-209ENST00000553280 ANKRD17O75179 2603 aaKnown RBP0.2□□□□□ -2.38
SCFD1-209ENST00000553280 K7EQZ3 153 aa0.2□□□□□ -2.38
SCFD1-209ENST00000553280 ANKRD26Q9UPS8 1709 aa0.2□□□□□ -2.38
SCFD1-209ENST00000553280 UBR5O95071 2799 aaPredicted RBP0.2□□□□□ -2.38
SCFD1-209ENST00000553280 H0Y9P7 68 aa0.19□□□□□ -2.38
SCFD1-209ENST00000553280 SPRR1BP22528 89 aa0.19□□□□□ -2.38
SCFD1-209ENST00000553280 C6orf201Q7Z4U5 140 aa0.19□□□□□ -2.38
SCFD1-209ENST00000553280 DMBT1Q9UGM3 2413 aaPredicted RBP0.19□□□□□ -2.38
SCFD1-209ENST00000553280 TROQ12816 1431 aaPredicted RBP0.19□□□□□ -2.38
SCFD1-209ENST00000553280 EDC4Q6P2E9 1401 aaKnown RBP0.19□□□□□ -2.38
SCFD1-209ENST00000553280 SYNE2Q8WXH0 6885 aaKnown RBP0.19□□□□□ -2.38
SCFD1-209ENST00000553280 MARF1Q9Y4F3 1742 aaKnown RBP0.18□□□□□ -2.38
SCFD1-209ENST00000553280 UQCRHLA0A096LP55 91 aa0.18□□□□□ -2.38
SCFD1-209ENST00000553280 A0A1B0GU69 56 aa0.18□□□□□ -2.38
SCFD1-209ENST00000553280 FAUP35544 74 aaKnown RBP0.18□□□□□ -2.38
SCFD1-209ENST00000553280 DEFB107AQ8IZN7 70 aa0.18□□□□□ -2.38
SCFD1-209ENST00000553280 WNK2Q9Y3S1 2297 aa0.17□□□□□ -2.38
SCFD1-209ENST00000553280 CELSR1Q9NYQ6 3014 aa0.17□□□□□ -2.38
SCFD1-209ENST00000553280 TARBP1Q13395 1621 aaKnown RBP0.17□□□□□ -2.38
SCFD1-209ENST00000553280 SPTBN1Q01082 2364 aaKnown RBP0.17□□□□□ -2.38
SCFD1-209ENST00000553280 ARMS2P0C7Q2 107 aa0.17□□□□□ -2.38
SCFD1-209ENST00000553280 PTPN13Q12923 2485 aa0.17□□□□□ -2.38
SCFD1-209ENST00000553280 ABCA2Q9BZC7 2435 aa0.17□□□□□ -2.38
SCFD1-209ENST00000553280 EPRSP07814 1512 aaKnown RBP0.17□□□□□ -2.38
SCFD1-209ENST00000553280 SHPRHQ149N8 1683 aa0.16□□□□□ -2.38
SCFD1-209ENST00000553280 GVINP1Q7Z2Y8 2422 aa0.16□□□□□ -2.38
SCFD1-209ENST00000553280 DOPEY2Q9Y3R5 2298 aa0.16□□□□□ -2.38
SCFD1-209ENST00000553280 FANCAO15360 1455 aa0.16□□□□□ -2.38
SCFD1-209ENST00000553280 KNDC1Q76NI1 1749 aa0.16□□□□□ -2.38
SCFD1-209ENST00000553280 CACNA1AO00555 2505 aa0.15□□□□□ -2.39
SCFD1-209ENST00000553280 AKAP12Q02952 1782 aa0.15□□□□□ -2.39
SCFD1-209ENST00000553280 PAPPA2Q9BXP8 1791 aa0.15□□□□□ -2.39
SCFD1-209ENST00000553280 USMG5Q96IX5 58 aa0.15□□□□□ -2.39
SCFD1-209ENST00000553280 CHD6Q8TD26 2715 aa0.15□□□□□ -2.39
SCFD1-209ENST00000553280 FSIP2Q5CZC0 6907 aa0.14□□□□□ -2.39
SCFD1-209ENST00000553280 CLTCQ00610 1675 aaKnown RBP0.14□□□□□ -2.39
SCFD1-209ENST00000553280 GNGT1P63211 74 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 HMGN3Q15651 99 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 ETDBQ3ZM63 59 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 ZNF720Q7Z2F6 126 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 CCDC141Q6ZP82 1450 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 TSC2P49815 1807 aa0.13□□□□□ -2.39
SCFD1-209ENST00000553280 TENM4Q6N022 2769 aa0.11□□□□□ -2.39
SCFD1-209ENST00000553280 IQSEC2Q5JU85 1478 aa0.11□□□□□ -2.39
SCFD1-209ENST00000553280 COX8AP10176 69 aa0.11□□□□□ -2.39
SCFD1-209ENST00000553280 VWFP04275 2813 aa0.1□□□□□ -2.39
SCFD1-209ENST00000553280 SLIT1O75093 1534 aa0.1□□□□□ -2.39
SCFD1-209ENST00000553280 F8WEM9 126 aa0.1□□□□□ -2.39
SCFD1-209ENST00000553280 PSENENQ9NZ42 101 aa0.1□□□□□ -2.39
SCFD1-209ENST00000553280 ATP10BO94823 1461 aa0.1□□□□□ -2.39
SCFD1-209ENST00000553280 COL7A1Q02388 2944 aa0.09□□□□□ -2.39
SCFD1-209ENST00000553280 GYPAP02724 150 aa0.09□□□□□ -2.4
SCFD1-209ENST00000553280 DNAJC13O75165 2243 aa0.09□□□□□ -2.4
SCFD1-209ENST00000553280 CUX1P39880 1505 aa0.08□□□□□ -2.4
SCFD1-209ENST00000553280 SAMD9Q5K651 1589 aa0.08□□□□□ -2.4
SCFD1-209ENST00000553280 C5P01031 1676 aa0.08□□□□□ -2.4
SCFD1-209ENST00000553280 ALKAL2Q6UX46 152 aa0.07□□□□□ -2.4
SCFD1-209ENST00000553280 HIGD1BQ9P298 99 aa0.07□□□□□ -2.4
SCFD1-209ENST00000553280 LRRC37AA6NMS7 1700 aa0.07□□□□□ -2.4
SCFD1-209ENST00000553280 MON2Q7Z3U7 1717 aa0.07□□□□□ -2.4
SCFD1-209ENST00000553280 BAZ1AQ9NRL2 1556 aaPredicted RBP0.06□□□□□ -2.4
SCFD1-209ENST00000553280 CEP162Q5TB80 1403 aa0.06□□□□□ -2.4
SCFD1-209ENST00000553280 NKTRP30414 1462 aaKnown RBP0.06□□□□□ -2.4
SCFD1-209ENST00000553280 D6R8Y8 96 aa0.06□□□□□ -2.4
SCFD1-209ENST00000553280 MUSTN1Q8IVN3 82 aa0.06□□□□□ -2.4
SCFD1-209ENST00000553280 FXYD6Q9H0Q3 95 aa0.06□□□□□ -2.4
SCFD1-209ENST00000553280 TTC37Q6PGP7 1564 aa0.06□□□□□ -2.4
SCFD1-209ENST00000553280 SPINK4O60575 86 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 LEPROTL1O95214 131 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 PRM1P04553 51 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 DEFB105AQ8NG35 78 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 C20orf78Q9BR46 151 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 SPRR2GQ9BYE4 73 aa0.05□□□□□ -2.4
SCFD1-209ENST00000553280 URB1O60287 2271 aaKnown RBP0.03□□□□□ -2.4
SCFD1-209ENST00000553280 MYO3AQ8NEV4 1616 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 TNXBP22105 4242 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 CRIPTQ9P021 101 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 SSPOA2VEC9 5147 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 KIAA1551Q9HCM1 1747 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 FLNCQ14315 2725 aa0.03□□□□□ -2.4
SCFD1-209ENST00000553280 FMN2Q9NZ56 1722 aa0.02□□□□□ -2.41
SCFD1-209ENST00000553280 SPRR2DP22532 72 aa0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms